Rmu_sc0015238.1_g000001

Protein FAR1-RELATED SEQUENCE 5-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0015238.1
OG0000164
Physical Location & Seq
Reverse (-)
3762 .. 5911
2150 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0015238.1_g000001.1.cds

Sequence Viewer

Length: 1203 bp
atggagttagaggatgatcatgtttatattcctcaagtaaaggcagagttgatgcctaaattgcaccaagagtttgaaacaatagatgatgttgctgctttctacaatagatatgcaaaagaagcagtgtttagtatcataagtcagtctagtgcaaccaacaaagataatacccaacttatgaggaaggagtatgtctgttataagcaaggaacttccaaagttgaaggagaaaaatgtaagagaggattaccaaaactgggttgtaaagcaagaattgcagttgtgagaaagaaggagtctggaagatatgcaatctctatatttgttgagggtcataaccacccattaacaagcccacctaggtttaagaggggacttcttcaccaacatcattatgagttagaggaggatcatattaatattaatgagaagccaaaaactgtcattttccttgacatagaagatcatatggctaaggtttatacacgtaaggtattttatgaagttcaagaacaattgaaagagcgcttcaaatataaactagaacttctaagagaaaatgtcactccttgcgtgtttaaggttgtgagaaagaacactaatacttgtaaatcccgtgaactgatttacgaaaaagcttatgattttgcatcatgcagcagtagaaagattgagagtgaacggcttccatgtcggcatgttttgtcatatttgattaaaatccaagatgttgataaattgcctattcagtgcatcttgaagagatggactaaagctgcaagacagagtcttgtgttagattctgatggaatgaaggtaaaagataacaaagctttacttgcaaggaggaccaaactattccagcatgctacatatgcaattgataaggcaatggtgagtgatgaggctagtcagctctttatggaatgcttggatgctttcttggagaatcttaaaacattgattggtaatgaaagtggacaaagtgcagtagttttggagactaagattgatgctattcagcatatttttaaggaaccaaatcaagtgagggccaaagggtgtgggagaaggttgaaaaaaggaagagagaagaggaaagttaaggtaaaggagagtcaaggtaggcaataccatggatgtggactatttggtcagtcacatgacaaaagaaattgtccaacacttcatggaaagtaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
FAR1 MULE SWIM

Protein Analysis

400

Amino Acids

46.35

Weight (kDa)

9.4

Isoelectric Point (pI)

42.02

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000164)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g02320 FvH4_1g21472 FvH4_2g00813 FvH4_2g02512 FvH4_2g03921 FvH4_2g23460 FvH4_3g29141 FvH4_4g05791 FvH4_4g06321 FvH4_4g15595 FvH4_4g18162 FvH4_4g18163 FvH4_4g29541 FvH4_4g29541 FvH4_4g29541 FvH4_4g29541 FvH4_4g29541 FvH4_5g31093 FvH4_6g01982 FvH4_6g21931 FvH4_6g44691 FvH4_6g48541
prunus_persica Prupe.1G074100_v2.0.a1 Prupe.3G021400_v2.0.a1
pyrus_communis pycom02g18570 pycom14g00670
rosa_chinensis RchiOBHm_Chr1g0379201 RchiOBHm_Chr1g0379361 RchiOBHm_Chr4g0405981 RchiOBHm_Chr5g0073641 RchiOBHm_Chr5g0073651 RchiOBHm_Chr7g0236661
rosa_multiflora Rmu_co8179562.1_g000001 Rmu_co8343647.1_g000001 Rmu_sc0000041.1_g000017 Rmu_sc0000114.1_g000020 Rmu_sc0000286.1_g000006 Rmu_sc0000308.1_g000038 Rmu_sc0000365.1_g000061 Rmu_sc0000365.1_g000062 Rmu_sc0000538.1_g000060 Rmu_sc0000538.1_g000061 Rmu_sc0000586.1_g000016 Rmu_sc0000898.1_g000007 Rmu_sc0000913.1_g000003 Rmu_sc0000913.1_g000004 Rmu_sc0000996.1_g000006 Rmu_sc0000996.1_g000007 Rmu_sc0000998.1_g000003 Rmu_sc0001350.1_g000009 Rmu_sc0002079.1_g000009 Rmu_sc0002200.1_g000013 Rmu_sc0002226.1_g000025 Rmu_sc0002279.1_g000014 Rmu_sc0002478.1_g000014 Rmu_sc0002717.1_g000004 Rmu_sc0002868.1_g000027 Rmu_sc0002889.1_g000043 Rmu_sc0003023.1_g000001 Rmu_sc0003110.1_g000006 Rmu_sc0003226.1_g000028 Rmu_sc0003226.1_g000029 Rmu_sc0003337.1_g000053 Rmu_sc0003558.1_g000007 Rmu_sc0004345.1_g000014 Rmu_sc0004383.1_g000007 Rmu_sc0004888.1_g000021 Rmu_sc0005114.1_g000012 Rmu_sc0005223.1_g000019 Rmu_sc0005223.1_g000020 Rmu_sc0005639.1_g000025 Rmu_sc0005685.1_g000027 Rmu_sc0005992.1_g000002 Rmu_sc0006326.1_g000034 Rmu_sc0006326.1_g000035 Rmu_sc0007390.1_g000012 Rmu_sc0007451.1_g000006 Rmu_sc0007825.1_g000003 Rmu_sc0008600.1_g000023 Rmu_sc0009291.1_g000003 Rmu_sc0012046.1_g000001 Rmu_sc0012046.1_g000002 Rmu_sc0012710.1_g000001 Rmu_sc0015238.1_g000001 Rmu_sc0016125.1_g000003 Rmu_sc0016175.1_g000001 Rmu_sc0016898.1_g000001 Rmu_sc0017323.1_g000010 Rmu_sc0017874.1_g000002 Rmu_sc0019167.1_g000001 Rmu_sc0020815.1_g000006 Rmu_sc0025564.1_g000001 Rmu_sc0026418.1_g000001 Rmu_sc0035188.1_g000002 Rmu_sc0039254.1_g000001 Rmu_ssc0000120.1_g000015 Rmu_ssc0000120.1_g000016 Rmu_ssc0000330.1_g000023 Rmu_ssc0000433.1_g000004
rosa_roxburghii Rroxscaffold_1G00047130 Rroxscaffold_1G00051320 Rroxscaffold_1G00056600 Rroxscaffold_2G00109650 Rroxscaffold_2G00119980 Rroxscaffold_3G00222550 Rroxscaffold_3G00224980 Rroxscaffold_3G00251020 Rroxscaffold_6G00411190 Rroxscaffold_7G00166520 Rroxscaffold_7G00172920 Rroxscaffold_7G00191860 Rroxscaffold_7G00194430
rosa_rugosa Rorug01G0198900 Rorug01G0217300 Rorug01G0244500 Rorug02G0147400 Rorug02G0152200 Rorug02G0595500 Rorug02G0595600 Rorug03G0060500 Rorug03G0203000 Rorug03G0285800 Rorug04G0027200 Rorug04G0027300 Rorug04G0225800 Rorug05G0073400 Rorug05G0213300 Rorug05G0324600 Rorug05G0390900 Rorug05G0391000 Rorug05G0391100 Rorug05G0391200 Rorug05G0462900 Rorug05G0473000 Rorug06G0256500 Rorug07G0199000 Rorug07G0208800 Rorug07G0208800 Rorug07G0316600 Rorug07G0316700
rosa_samantha Rh2BG532400 Rh2CG581900 Rh3CG322600 Rh6AG079900 Rh6AG250800 Rh6AG496300 Rh6BG506100 Rh6CG126000 Rh6CG511700 Rh6DG109400 Rh6DG112700 Rh7CG104500 Rh7CG322000 Rh7CG431500
rosa_wichuraiana Rw0G020410 Rw1G009190 Rw1G014580 Rw1G021000 Rw1G022190 Rw2G025900 Rw2G029920 Rw2G037530 Rw3G018560 Rw3G020560 Rw4G008500 Rw4G022520 Rw5G019030 Rw5G031180 Rw5G044830 Rw6G005010 Rw6G006890 Rw6G011330 Rw6G011380 Rw6G023900 Rw7G028490 Rw7G030170 Rw7G030370 Rw7G032030 Rw7G032040

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 204
AasI GACNNNNNNGTC 1 cut(s) 1155
AclWI GGATC 1 cut(s) 420
AfeI AGCGCT 1 cut(s) 530
AfiI CCNNNNNNNGG 1 cut(s) 260
AflIII ACRYGT 1 cut(s) 488
AgsI TTSAA 7 cut(s) 77, 227, 512, 523, 535, 763, 1081
AluBI AGCT 4 cut(s) 641, 779, 836, 919
AluI AGCT 4 cut(s) 641, 779, 836, 919
Alw26I GTCTC 1 cut(s) 998
AlwI GGATC 1 cut(s) 420
Aor51HI AGCGCT 1 cut(s) 530
AoxI GGCC 1 cut(s) 1056
ApeKI GCWGC 3 cut(s) 95, 660, 779
AseI ATTAAT 2 cut(s) 420, 426
Asp700I GAANNNNTTC 1 cut(s) 687
AspA2I CCTAGG 1 cut(s) 362
AspLEI GCGC 1 cut(s) 531
AspS9I GGNCC 2 cut(s) 852, 1056
AsuHPI GGTGA 2 cut(s) 377, 910
AvaII GGWCC 1 cut(s) 852
AvrII CCTAGG 1 cut(s) 362
BbvI GCAGC 3 cut(s) 82, 672, 766
BccI CCATC 2 cut(s) 762, 803
BceAI ACGGC 1 cut(s) 701
BclI TGATCA 1 cut(s) 16
BcoDI GTCTC 1 cut(s) 998
BfaI CTAG 4 cut(s) 150, 363, 545, 912
BfoI RGCGCY 1 cut(s) 532
BisI GCNGC 3 cut(s) 96, 661, 780
BlnI CCTAGG 1 cut(s) 362
BlsI GCNGC 3 cut(s) 97, 662, 781
Bme18I GGWCC 1 cut(s) 852
BmgT120I GGNCC 2 cut(s) 852, 1056
BmiI GGNNCC 1 cut(s) 1041
BmrI ACTGGG 1 cut(s) 269
BmsI GCATC 5 cut(s) 42, 662, 765, 928, 1006
BmuI ACTGGG 1 cut(s) 269
Bpu10I CCTNAGC 1 cut(s) 477
BpuEI CTTGAG 1 cut(s) 18
BsaAI YACGTR 1 cut(s) 491
BsaBI GATNNNNATC 1 cut(s) 722
BsaJI CCNNGG 2 cut(s) 362, 1138
Bsc4I CCNNNNNNNGG 1 cut(s) 260
Bse1I ACTGG 1 cut(s) 264
Bse3DI GCAATG 1 cut(s) 900
Bse8I GATNNNNATC 1 cut(s) 722
BseDI CCNNGG 2 cut(s) 362, 1138
BseGI GGATG 3 cut(s) 19, 943, 1148
BseJI GATNNNNATC 1 cut(s) 722
BseLI CCNNNNNNNGG 1 cut(s) 260
BseMI GCAATG 1 cut(s) 900
BseNI ACTGG 1 cut(s) 264
BseRI GAGGAG 1 cut(s) 422
BseXI GCAGC 3 cut(s) 82, 672, 766
BsgI GTGCAG 1 cut(s) 1011
BshFI GGCC 1 cut(s) 1058
BslFI GGGAC 1 cut(s) 390
BslI CCNNNNNNNGG 1 cut(s) 260
BsmAI GTCTC 1 cut(s) 998
BsmFI GGGAC 1 cut(s) 390
BsmI GAATGC 1 cut(s) 935
BsnI GGCC 1 cut(s) 1058
Bsp143I GATC 3 cut(s) 16, 412, 466
Bsp19I CCATGG 1 cut(s) 1138
BspANI GGCC 1 cut(s) 1058
BspLI GGNNCC 1 cut(s) 1041
BspPI GGATC 1 cut(s) 420
BsrDI GCAATG 1 cut(s) 900
BsrI ACTGG 1 cut(s) 264
BssECI CCNNGG 2 cut(s) 362, 1138
BssMI GATC 3 cut(s) 16, 412, 466
BssT1I CCWWGG 2 cut(s) 362, 1138
Bst4CI ACNGT 1 cut(s) 445
Bst6I CTCTTC 3 cut(s) 758, 1084, 1091
BstAPI GCANNNNNTGC 1 cut(s) 278
BstBAI YACGTR 1 cut(s) 491
BstC8I GCNNGC 1 cut(s) 870
BstDEI CTNAG 3 cut(s) 477, 554, 1008
BstDSI CCRYGG 1 cut(s) 1138
BstF5I GGATG 3 cut(s) 19, 943, 1148
BstH2I RGCGCY 1 cut(s) 532
BstHHI GCGC 1 cut(s) 531
BstKTI GATC 3 cut(s) 19, 415, 469
BstMAI GTCTC 1 cut(s) 998
BstMBI GATC 3 cut(s) 16, 412, 466
BstMWI GCNNNNNNNGC 5 cut(s) 61, 122, 278, 842, 878
BstNSI RCATGY 2 cut(s) 704, 872
BstV1I GCAGC 3 cut(s) 82, 672, 766
BstXI CCANNNNNNTGG 1 cut(s) 1145
BsuRI GGCC 1 cut(s) 1058
BtgI CCRYGG 1 cut(s) 1138
BtsCI GGATG 3 cut(s) 19, 943, 1148
BtsI GCAGTG 1 cut(s) 132
BtsIMutI CAGTG 2 cut(s) 132, 758
Cac8I GCNNGC 1 cut(s) 870
CfoI GCGC 1 cut(s) 531
Cfr13I GGNCC 2 cut(s) 852, 1056
CspCI CAANNNNNGTGG 2 cut(s) 1048, 1083
CviAII CATG 8 cut(s) 20, 657, 693, 701, 869, 1139, 1166, 1193
DdeI CTNAG 3 cut(s) 477, 554, 1008
DpnI GATC 3 cut(s) 18, 414, 468
DpnII GATC 3 cut(s) 16, 412, 466
DrdI GACNNNNNNGTC 1 cut(s) 1155
DseDI GACNNNNNNGTC 1 cut(s) 1155
Eam1104I CTCTTC 3 cut(s) 758, 1084, 1091
EarI CTCTTC 3 cut(s) 758, 1084, 1091
Eco130I CCWWGG 2 cut(s) 362, 1138
Eco47I GGWCC 1 cut(s) 852
Eco47III AGCGCT 1 cut(s) 530
EcoT14I CCWWGG 2 cut(s) 362, 1138
ErhI CCWWGG 2 cut(s) 362, 1138
FaeI CATG 8 cut(s) 23, 660, 696, 704, 872, 1142, 1169, 1196
FalI AAGNNNNNCTT 2 cut(s) 825, 857
FaqI GGGAC 1 cut(s) 390
FatI CATG 8 cut(s) 19, 656, 692, 700, 868, 1138, 1165, 1192
FauNDI CATATG 2 cut(s) 471, 877
FbaI TGATCA 1 cut(s) 16
Fnu4HI GCNGC 3 cut(s) 96, 661, 780
FokI GGATG 3 cut(s) 26, 950, 1155
Fsp4HI GCNGC 3 cut(s) 96, 661, 780
FspBI CTAG 4 cut(s) 150, 363, 545, 912
GlaI GCGC 1 cut(s) 530
GluI GCNGC 3 cut(s) 96, 661, 780
HaeII RGCGCY 1 cut(s) 532
HaeIII GGCC 1 cut(s) 1058
HhaI GCGC 1 cut(s) 531
Hin1II CATG 8 cut(s) 23, 660, 696, 704, 872, 1142, 1169, 1196
Hin6I GCGC 1 cut(s) 529
HinP1I GCGC 1 cut(s) 529
HindIII AAGCTT 2 cut(s) 639, 834
HinfI GANTC 5 cut(s) 299, 790, 803, 952, 1120
HphI GGTGA 2 cut(s) 377, 910
Hpy166II GTNNAC 4 cut(s) 623, 683, 983, 1148
Hpy188I TCNGA 1 cut(s) 808
Hpy188III TCNNGA 3 cut(s) 303, 512, 760
Hpy8I GTNNAC 4 cut(s) 623, 683, 983, 1148
HpyAV CCTTC 5 cut(s) 181, 221, 289, 811, 1068
HpyCH4III ACNGT 1 cut(s) 445
HpyCH4IV ACGT 1 cut(s) 490
HpyF10VI GCNNNNNNNGC 5 cut(s) 61, 122, 278, 842, 878
HpyF3I CTNAG 3 cut(s) 477, 554, 1008
HpySE526I ACGT 1 cut(s) 490
Hsp92II CATG 8 cut(s) 23, 660, 696, 704, 872, 1142, 1169, 1196
HspAI GCGC 1 cut(s) 529
Ksp22I TGATCA 1 cut(s) 16
Kzo9I GATC 3 cut(s) 16, 412, 466
LpnPI CCDG 3 cut(s) 245, 288, 878
Lsp1109I GCAGC 3 cut(s) 82, 672, 766
LweI GCATC 5 cut(s) 42, 662, 765, 928, 1006
MaeI CTAG 4 cut(s) 150, 363, 545, 912
MaeII ACGT 1 cut(s) 490
MaeIII GTNAC 2 cut(s) 565, 1161
MalI GATC 3 cut(s) 18, 414, 468
MboI GATC 3 cut(s) 16, 412, 466
MboII GAAGA 6 cut(s) 318, 374, 476, 775, 1101, 1108
MfeI CAATTG 2 cut(s) 518, 882
MluCI AATT 6 cut(s) 59, 276, 518, 740, 882, 1177
MlyI GAGTC 3 cut(s) 308, 799, 1129
MroXI GAANNNNTTC 1 cut(s) 687
MseI TTAA 9 cut(s) 350, 369, 420, 426, 582, 720, 957, 1035, 1107
MslI CAYNNNNRTG 2 cut(s) 396, 1143
MunI CAATTG 2 cut(s) 518, 882
Mva1269I GAATGC 1 cut(s) 935
MwoI GCNNNNNNNGC 5 cut(s) 61, 122, 278, 842, 878
NcoI CCATGG 1 cut(s) 1138
NdeI CATATG 2 cut(s) 471, 877
NdeII GATC 3 cut(s) 16, 412, 466
NlaIII CATG 8 cut(s) 23, 660, 696, 704, 872, 1142, 1169, 1196
NlaIV GGNNCC 1 cut(s) 1041
NmuCI GTSAC 2 cut(s) 565, 1161
NspI RCATGY 2 cut(s) 704, 872
PaeI GCATGC 1 cut(s) 872
PctI GAATGC 1 cut(s) 935
PdmI GAANNNNTTC 1 cut(s) 687
PfeI GAWTC 2 cut(s) 803, 952
PflFI GACNNNGTC 1 cut(s) 789
PkrI GCNGC 3 cut(s) 97, 662, 781
PleI GAGTC 3 cut(s) 307, 798, 1128
PpsI GAGTC 3 cut(s) 307, 798, 1128
Ppu21I YACGTR 1 cut(s) 491
PshBI ATTAAT 2 cut(s) 420, 426
PsiI TTATAA 1 cut(s) 204
PspN4I GGNNCC 1 cut(s) 1041
PspPI GGNCC 2 cut(s) 852, 1056
PsyI GACNNNGTC 1 cut(s) 789
RseI CAYNNNNRTG 2 cut(s) 396, 1143
SaqAI TTAA 9 cut(s) 350, 369, 420, 426, 582, 720, 957, 1035, 1107
SatI GCNGC 3 cut(s) 96, 661, 780
Sau3AI GATC 3 cut(s) 16, 412, 466
Sau96I GGNCC 2 cut(s) 852, 1056
SchI GAGTC 3 cut(s) 308, 799, 1129
SfaNI GCATC 5 cut(s) 42, 662, 765, 928, 1006
SinI GGWCC 1 cut(s) 852
SmiMI CAYNNNNRTG 2 cut(s) 396, 1143
SmlI CTYRAG 1 cut(s) 33
SmoI CTYRAG 1 cut(s) 33
SphI GCATGC 1 cut(s) 872
Sse9I AATT 6 cut(s) 59, 276, 518, 740, 882, 1177
SspI AATATT 1 cut(s) 424
SspMI CTAG 4 cut(s) 150, 363, 545, 912
StyI CCWWGG 2 cut(s) 362, 1138
TaaI ACNGT 1 cut(s) 445
TaiI ACGT 1 cut(s) 493
TasI AATT 6 cut(s) 59, 276, 518, 740, 882, 1177
TfiI GAWTC 2 cut(s) 803, 952
Tru1I TTAA 9 cut(s) 350, 369, 420, 426, 582, 720, 957, 1035, 1107
Tru9I TTAA 9 cut(s) 350, 369, 420, 426, 582, 720, 957, 1035, 1107
TscAI CASTG 2 cut(s) 132, 758
TseFI GTSAC 2 cut(s) 565, 1161
TseI GCWGC 3 cut(s) 95, 660, 779
Tsp45I GTSAC 2 cut(s) 565, 1161
TspDTI ATGAA 4 cut(s) 519, 830, 990, 1181
TspRI CASTG 2 cut(s) 132, 758
Tth111I GACNNNGTC 1 cut(s) 789
VpaK11BI GGWCC 1 cut(s) 852
VspI ATTAAT 2 cut(s) 420, 426
XceI RCATGY 2 cut(s) 704, 872
XmaJI CCTAGG 1 cut(s) 362
XmnI GAANNNNTTC 1 cut(s) 687
XspI CTAG 4 cut(s) 150, 363, 545, 912
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.