Rh2BG532400

Protein FAR1-RELATED SEQUENCE 5-like

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2B
Physical Location & Seq
Reverse (-)
74163708 .. 74166567
2860 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2BG532400.1

Sequence Viewer

Length: 366 bp
ATGGAAGATAATAATGAGATGGTTGTGCCTACGGAAATGGAGACTAATGGGATGGTTGTACATGCGGAAGTAGAAACTCAACATATTCAAGTTATTCCTCCATCACAAGAAAATGTCTCTACTTCAGCTTTCTATCCTCAAGTGAGTAATGAGCTTAAACCCTTCAAAGGCCAGGAATTTAAAACATGGGAGGAGGCATATGTTTTTTATACCAAATATGCATCTGCAGCTGGATTTGCTGAAAATTTTGGTGGAGATGACATAGATGATGATAGTTATTCGTCACAGTTAGTTCTTCTAGATATTGGACTGCTTGCAGCTATAAGAGTTAGTTCTTCTAGATATTGGACTGCTTGCAGCTATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

121

Amino Acids

13.58

Weight (kDa)

4.17

Isoelectric Point (pI)

39.72

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000164)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g02320 FvH4_1g21472 FvH4_2g00813 FvH4_2g02512 FvH4_2g03921 FvH4_2g23460 FvH4_3g29141 FvH4_4g05791 FvH4_4g06321 FvH4_4g15595 FvH4_4g18162 FvH4_4g18163 FvH4_4g29541 FvH4_4g29541 FvH4_4g29541 FvH4_4g29541 FvH4_4g29541 FvH4_5g31093 FvH4_6g01982 FvH4_6g21931 FvH4_6g44691 FvH4_6g48541
prunus_persica Prupe.1G074100_v2.0.a1 Prupe.3G021400_v2.0.a1
pyrus_communis pycom02g18570 pycom14g00670
rosa_chinensis RchiOBHm_Chr1g0379201 RchiOBHm_Chr1g0379361 RchiOBHm_Chr4g0405981 RchiOBHm_Chr5g0073641 RchiOBHm_Chr5g0073651 RchiOBHm_Chr7g0236661
rosa_multiflora Rmu_co8179562.1_g000001 Rmu_co8343647.1_g000001 Rmu_sc0000041.1_g000017 Rmu_sc0000114.1_g000020 Rmu_sc0000286.1_g000006 Rmu_sc0000308.1_g000038 Rmu_sc0000365.1_g000061 Rmu_sc0000365.1_g000062 Rmu_sc0000538.1_g000060 Rmu_sc0000538.1_g000061 Rmu_sc0000586.1_g000016 Rmu_sc0000898.1_g000007 Rmu_sc0000913.1_g000003 Rmu_sc0000913.1_g000004 Rmu_sc0000996.1_g000006 Rmu_sc0000996.1_g000007 Rmu_sc0000998.1_g000003 Rmu_sc0001350.1_g000009 Rmu_sc0002079.1_g000009 Rmu_sc0002200.1_g000013 Rmu_sc0002226.1_g000025 Rmu_sc0002279.1_g000014 Rmu_sc0002478.1_g000014 Rmu_sc0002717.1_g000004 Rmu_sc0002868.1_g000027 Rmu_sc0002889.1_g000043 Rmu_sc0003023.1_g000001 Rmu_sc0003110.1_g000006 Rmu_sc0003226.1_g000028 Rmu_sc0003226.1_g000029 Rmu_sc0003337.1_g000053 Rmu_sc0003558.1_g000007 Rmu_sc0004345.1_g000014 Rmu_sc0004383.1_g000007 Rmu_sc0004888.1_g000021 Rmu_sc0005114.1_g000012 Rmu_sc0005223.1_g000019 Rmu_sc0005223.1_g000020 Rmu_sc0005639.1_g000025 Rmu_sc0005685.1_g000027 Rmu_sc0005992.1_g000002 Rmu_sc0006326.1_g000034 Rmu_sc0006326.1_g000035 Rmu_sc0007390.1_g000012 Rmu_sc0007451.1_g000006 Rmu_sc0007825.1_g000003 Rmu_sc0008600.1_g000023 Rmu_sc0009291.1_g000003 Rmu_sc0012046.1_g000001 Rmu_sc0012046.1_g000002 Rmu_sc0012710.1_g000001 Rmu_sc0015238.1_g000001 Rmu_sc0016125.1_g000003 Rmu_sc0016175.1_g000001 Rmu_sc0016898.1_g000001 Rmu_sc0017323.1_g000010 Rmu_sc0017874.1_g000002 Rmu_sc0019167.1_g000001 Rmu_sc0020815.1_g000006 Rmu_sc0025564.1_g000001 Rmu_sc0026418.1_g000001 Rmu_sc0035188.1_g000002 Rmu_sc0039254.1_g000001 Rmu_ssc0000120.1_g000015 Rmu_ssc0000120.1_g000016 Rmu_ssc0000330.1_g000023 Rmu_ssc0000433.1_g000004
rosa_roxburghii Rroxscaffold_1G00047130 Rroxscaffold_1G00051320 Rroxscaffold_1G00056600 Rroxscaffold_2G00109650 Rroxscaffold_2G00119980 Rroxscaffold_3G00222550 Rroxscaffold_3G00224980 Rroxscaffold_3G00251020 Rroxscaffold_6G00411190 Rroxscaffold_7G00166520 Rroxscaffold_7G00172920 Rroxscaffold_7G00191860 Rroxscaffold_7G00194430
rosa_rugosa Rorug01G0198900 Rorug01G0217300 Rorug01G0244500 Rorug02G0147400 Rorug02G0152200 Rorug02G0595500 Rorug02G0595600 Rorug03G0060500 Rorug03G0203000 Rorug03G0285800 Rorug04G0027200 Rorug04G0027300 Rorug04G0225800 Rorug05G0073400 Rorug05G0213300 Rorug05G0324600 Rorug05G0390900 Rorug05G0391000 Rorug05G0391100 Rorug05G0391200 Rorug05G0462900 Rorug05G0473000 Rorug06G0256500 Rorug07G0199000 Rorug07G0208800 Rorug07G0208800 Rorug07G0316600 Rorug07G0316700
rosa_samantha Rh2BG532400 Rh2CG581900 Rh3CG322600 Rh6AG079900 Rh6AG250800 Rh6AG496300 Rh6BG506100 Rh6CG126000 Rh6CG511700 Rh6DG109400 Rh6DG112700 Rh7CG104500 Rh7CG322000 Rh7CG431500
rosa_wichuraiana Rw0G020410 Rw1G009190 Rw1G014580 Rw1G021000 Rw1G022190 Rw2G025900 Rw2G029920 Rw2G037530 Rw3G018560 Rw3G020560 Rw4G008500 Rw4G022520 Rw5G019030 Rw5G031180 Rw5G044830 Rw6G005010 Rw6G006890 Rw6G011330 Rw6G011380 Rw6G023900 Rw7G028490 Rw7G030170 Rw7G030370 Rw7G032030 Rw7G032040

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 65
AcsI RAATTY 2 cut(s) 176, 244
AcuI CTGAAG 1 cut(s) 108
AfaI GTAC 1 cut(s) 60
AfiI CCNNNNNNNGG 1 cut(s) 167
AgsI TTSAA 2 cut(s) 89, 166
AjnI CCWGG 1 cut(s) 171
AluBI AGCT 5 cut(s) 128, 154, 230, 320, 360
AluI AGCT 5 cut(s) 128, 154, 230, 320, 360
Alw26I GTCTC 2 cut(s) 35, 121
AoxI GGCC 1 cut(s) 169
ApeKI GCWGC 3 cut(s) 227, 317, 357
ApoI RAATTY 2 cut(s) 176, 244
BbvI GCAGC 2 cut(s) 239, 329
BccI CCATC 3 cut(s) 13, 46, 109
BciT130I CCWGG 1 cut(s) 173
BcoDI GTCTC 2 cut(s) 35, 121
BfaI CTAG 2 cut(s) 299, 339
BfmI CTRYAG 1 cut(s) 225
BisI GCNGC 3 cut(s) 228, 318, 358
BlsI GCNGC 3 cut(s) 229, 319, 359
Bme1390I CCNGG 1 cut(s) 173
BmrFI CCNGG 1 cut(s) 173
BmsI GCATC 1 cut(s) 230
BpuEI CTTGAG 1 cut(s) 123
Bsc4I CCNNNNNNNGG 1 cut(s) 167
BseBI CCWGG 1 cut(s) 173
BseGI GGATG 1 cut(s) 57
BseLI CCNNNNNNNGG 1 cut(s) 167
BseRI GAGGAG 1 cut(s) 206
BseXI GCAGC 2 cut(s) 239, 329
BshFI GGCC 1 cut(s) 171
BslI CCNNNNNNNGG 1 cut(s) 167
BsmAI GTCTC 2 cut(s) 35, 121
BsnI GGCC 1 cut(s) 171
Bsp1407I TGTACA 1 cut(s) 58
BspACI CCGC 1 cut(s) 65
BspANI GGCC 1 cut(s) 171
BspMAI CTGCAG 1 cut(s) 229
BsrGI TGTACA 1 cut(s) 58
Bst2UI CCWGG 1 cut(s) 173
Bst4CI ACNGT 1 cut(s) 288
BstAUI TGTACA 1 cut(s) 58
BstC8I GCNNGC 2 cut(s) 315, 355
BstF5I GGATG 1 cut(s) 57
BstMAI GTCTC 2 cut(s) 35, 121
BstMWI GCNNNNNNNGC 2 cut(s) 227, 236
BstNI CCWGG 1 cut(s) 173
BstNSI RCATGY 1 cut(s) 65
BstSCI CCNGG 1 cut(s) 171
BstSFI CTRYAG 1 cut(s) 225
BstV1I GCAGC 2 cut(s) 239, 329
BsuRI GGCC 1 cut(s) 171
BtsCI GGATG 1 cut(s) 57
Cac8I GCNNGC 2 cut(s) 315, 355
Csp6I GTAC 1 cut(s) 59
CviAII CATG 2 cut(s) 62, 186
CviJI RGCY 6 cut(s) 128, 154, 171, 230, 320, 360
CviKI_1 RGCY 6 cut(s) 128, 154, 171, 230, 320, 360
CviQI GTAC 1 cut(s) 59
DraI TTTAAA 1 cut(s) 181
Eco57I CTGAAG 1 cut(s) 108
EcoRII CCWGG 1 cut(s) 171
EcoT22I ATGCAT 1 cut(s) 223
FaeI CATG 2 cut(s) 65, 189
FaiI YATR 9 cut(s) 63, 84, 187, 199, 201, 210, 219, 263, 323
FatI CATG 2 cut(s) 61, 185
FauNDI CATATG 1 cut(s) 199
Fnu4HI GCNGC 3 cut(s) 228, 318, 358
FokI GGATG 1 cut(s) 64
Fsp4HI GCNGC 3 cut(s) 228, 318, 358
FspBI CTAG 2 cut(s) 299, 339
GluI GCNGC 3 cut(s) 228, 318, 358
HaeIII GGCC 1 cut(s) 171
Hin1II CATG 2 cut(s) 65, 189
Hpy188III TCNNGA 2 cut(s) 299, 339
HpyAV CCTTC 1 cut(s) 172
HpyCH4III ACNGT 1 cut(s) 288
HpyCH4V TGCA 4 cut(s) 221, 227, 317, 357
HpyF10VI GCNNNNNNNGC 2 cut(s) 227, 236
Hsp92II CATG 2 cut(s) 65, 189
LpnPI CCDG 3 cut(s) 158, 185, 216
Lsp1109I GCAGC 2 cut(s) 239, 329
LweI GCATC 1 cut(s) 230
MaeI CTAG 2 cut(s) 299, 339
MaeIII GTNAC 1 cut(s) 282
MboII GAAGA 3 cut(s) 17, 287, 327
MluCI AATT 2 cut(s) 176, 244
MnlI CCTC 4 cut(s) 108, 147, 184, 187
Mph1103I ATGCAT 1 cut(s) 223
MseI TTAA 2 cut(s) 156, 180
MspA1I CMGCKG 1 cut(s) 230
MspR9I CCNGG 1 cut(s) 173
MvaI CCWGG 1 cut(s) 173
MwoI GCNNNNNNNGC 2 cut(s) 227, 236
NdeI CATATG 1 cut(s) 199
NlaIII CATG 2 cut(s) 65, 189
NmuCI GTSAC 1 cut(s) 282
NsiI ATGCAT 1 cut(s) 223
NspI RCATGY 1 cut(s) 65
PkrI GCNGC 3 cut(s) 229, 319, 359
Psp6I CCWGG 1 cut(s) 171
PspGI CCWGG 1 cut(s) 171
PstI CTGCAG 1 cut(s) 229
PvuII CAGCTG 1 cut(s) 230
RsaI GTAC 1 cut(s) 60
RsaNI GTAC 1 cut(s) 59
SaqAI TTAA 2 cut(s) 156, 180
SatI GCNGC 3 cut(s) 228, 318, 358
ScrFI CCNGG 1 cut(s) 173
SetI ASST 5 cut(s) 130, 156, 232, 322, 362
SfaNI GCATC 1 cut(s) 230
SfcI CTRYAG 1 cut(s) 225
SmlI CTYRAG 1 cut(s) 138
SmoI CTYRAG 1 cut(s) 138
Sse9I AATT 2 cut(s) 176, 244
SsiI CCGC 1 cut(s) 65
SspMI CTAG 2 cut(s) 299, 339
StyD4I CCNGG 1 cut(s) 171
TaaI ACNGT 1 cut(s) 288
TasI AATT 2 cut(s) 176, 244
TatI WGTACW 1 cut(s) 58
Tru1I TTAA 2 cut(s) 156, 180
Tru9I TTAA 2 cut(s) 156, 180
TseFI GTSAC 1 cut(s) 282
TseI GCWGC 3 cut(s) 227, 317, 357
Tsp45I GTSAC 1 cut(s) 282
TspGWI ACGGA 1 cut(s) 47
XapI RAATTY 2 cut(s) 176, 244
XbaI TCTAGA 2 cut(s) 298, 338
XceI RCATGY 1 cut(s) 65
XspI CTAG 2 cut(s) 299, 339
Zsp2I ATGCAT 1 cut(s) 223
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.