Rmu_ssc0000330.1_g000023

Protein FAR1-RELATED SEQUENCE 5-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_ssc0000330.1
OG0000164
Physical Location & Seq
Forward (+)
113137 .. 114552
1416 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_ssc0000330.1_g000023.1.cds

Sequence Viewer

Length: 816 bp
atgccaggagatgcactagaaaatgaccacaagatgatcattaccgaccaagatcctgcaatgactaaagccatttcagaagcactccaacaaacatgtcatagatattgtagttggcacattcttaataaatttgttgagaagctagatgcgattaaatatcgggattcctaccaagactttcatagctgcatatggaattcaagtagtagagaggagtttgactcaagatggattgaaattattgagaagagtgggaaatctaattttgcatcatacggctgtagaaagtttgacagtgaagggatcccatgtcagcctgttttggcatatttgattaagatccaagatgttgataaattgcctattcagtacatcttgaagagatggactaaagctgcaagacagagagttgtgttagattctaatggaatggagataacagataacaaagctttacttgcaaggaggactaaactattccagcatgctacatatgcaattgataaggttatggtgagtgatgaggctacccagtctttatggaagcattggatgcttttttggagaatatcaaactatcaagtgagagcaaaagggtgtggaagaaggttgaagaaaggaaaagagaagaggaaagttaaggtaaaggccagtcaaggtaggcaatgccatggatgtggactatttggtcaatcacatgacaaaagaaattgtccagcacttcatggaagacctgctattgatgaagatggggattcaagttccactagtatggatgaggatagttgttcatcatctcatttggcagaataa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
FAR1 MULE SWIM

Protein Analysis

271

Amino Acids

31.14

Weight (kDa)

8.91

Isoelectric Point (pI)

61.67

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000164)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g02320 FvH4_1g21472 FvH4_2g00813 FvH4_2g02512 FvH4_2g03921 FvH4_2g23460 FvH4_3g29141 FvH4_4g05791 FvH4_4g06321 FvH4_4g15595 FvH4_4g18162 FvH4_4g18163 FvH4_4g29541 FvH4_4g29541 FvH4_4g29541 FvH4_4g29541 FvH4_4g29541 FvH4_5g31093 FvH4_6g01982 FvH4_6g21931 FvH4_6g44691 FvH4_6g48541
prunus_persica Prupe.1G074100_v2.0.a1 Prupe.3G021400_v2.0.a1
pyrus_communis pycom02g18570 pycom14g00670
rosa_chinensis RchiOBHm_Chr1g0379201 RchiOBHm_Chr1g0379361 RchiOBHm_Chr4g0405981 RchiOBHm_Chr5g0073641 RchiOBHm_Chr5g0073651 RchiOBHm_Chr7g0236661
rosa_multiflora Rmu_co8179562.1_g000001 Rmu_co8343647.1_g000001 Rmu_sc0000041.1_g000017 Rmu_sc0000114.1_g000020 Rmu_sc0000286.1_g000006 Rmu_sc0000308.1_g000038 Rmu_sc0000365.1_g000061 Rmu_sc0000365.1_g000062 Rmu_sc0000538.1_g000060 Rmu_sc0000538.1_g000061 Rmu_sc0000586.1_g000016 Rmu_sc0000898.1_g000007 Rmu_sc0000913.1_g000003 Rmu_sc0000913.1_g000004 Rmu_sc0000996.1_g000006 Rmu_sc0000996.1_g000007 Rmu_sc0000998.1_g000003 Rmu_sc0001350.1_g000009 Rmu_sc0002079.1_g000009 Rmu_sc0002200.1_g000013 Rmu_sc0002226.1_g000025 Rmu_sc0002279.1_g000014 Rmu_sc0002478.1_g000014 Rmu_sc0002717.1_g000004 Rmu_sc0002868.1_g000027 Rmu_sc0002889.1_g000043 Rmu_sc0003023.1_g000001 Rmu_sc0003110.1_g000006 Rmu_sc0003226.1_g000028 Rmu_sc0003226.1_g000029 Rmu_sc0003337.1_g000053 Rmu_sc0003558.1_g000007 Rmu_sc0004345.1_g000014 Rmu_sc0004383.1_g000007 Rmu_sc0004888.1_g000021 Rmu_sc0005114.1_g000012 Rmu_sc0005223.1_g000019 Rmu_sc0005223.1_g000020 Rmu_sc0005639.1_g000025 Rmu_sc0005685.1_g000027 Rmu_sc0005992.1_g000002 Rmu_sc0006326.1_g000034 Rmu_sc0006326.1_g000035 Rmu_sc0007390.1_g000012 Rmu_sc0007451.1_g000006 Rmu_sc0007825.1_g000003 Rmu_sc0008600.1_g000023 Rmu_sc0009291.1_g000003 Rmu_sc0012046.1_g000001 Rmu_sc0012046.1_g000002 Rmu_sc0012710.1_g000001 Rmu_sc0015238.1_g000001 Rmu_sc0016125.1_g000003 Rmu_sc0016175.1_g000001 Rmu_sc0016898.1_g000001 Rmu_sc0017323.1_g000010 Rmu_sc0017874.1_g000002 Rmu_sc0019167.1_g000001 Rmu_sc0020815.1_g000006 Rmu_sc0025564.1_g000001 Rmu_sc0026418.1_g000001 Rmu_sc0035188.1_g000002 Rmu_sc0039254.1_g000001 Rmu_ssc0000120.1_g000015 Rmu_ssc0000120.1_g000016 Rmu_ssc0000330.1_g000023 Rmu_ssc0000433.1_g000004
rosa_roxburghii Rroxscaffold_1G00047130 Rroxscaffold_1G00051320 Rroxscaffold_1G00056600 Rroxscaffold_2G00109650 Rroxscaffold_2G00119980 Rroxscaffold_3G00222550 Rroxscaffold_3G00224980 Rroxscaffold_3G00251020 Rroxscaffold_6G00411190 Rroxscaffold_7G00166520 Rroxscaffold_7G00172920 Rroxscaffold_7G00191860 Rroxscaffold_7G00194430
rosa_rugosa Rorug01G0198900 Rorug01G0217300 Rorug01G0244500 Rorug02G0147400 Rorug02G0152200 Rorug02G0595500 Rorug02G0595600 Rorug03G0060500 Rorug03G0203000 Rorug03G0285800 Rorug04G0027200 Rorug04G0027300 Rorug04G0225800 Rorug05G0073400 Rorug05G0213300 Rorug05G0324600 Rorug05G0390900 Rorug05G0391000 Rorug05G0391100 Rorug05G0391200 Rorug05G0462900 Rorug05G0473000 Rorug06G0256500 Rorug07G0199000 Rorug07G0208800 Rorug07G0208800 Rorug07G0316600 Rorug07G0316700
rosa_samantha Rh2BG532400 Rh2CG581900 Rh3CG322600 Rh6AG079900 Rh6AG250800 Rh6AG496300 Rh6BG506100 Rh6CG126000 Rh6CG511700 Rh6DG109400 Rh6DG112700 Rh7CG104500 Rh7CG322000 Rh7CG431500
rosa_wichuraiana Rw0G020410 Rw1G009190 Rw1G014580 Rw1G021000 Rw1G022190 Rw2G025900 Rw2G029920 Rw2G037530 Rw3G018560 Rw3G020560 Rw4G008500 Rw4G022520 Rw5G019030 Rw5G031180 Rw5G044830 Rw6G005010 Rw6G006890 Rw6G011330 Rw6G011380 Rw6G023900 Rw7G028490 Rw7G030170 Rw7G030370 Rw7G032030 Rw7G032040

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 690
Acc36I ACCTGC 1 cut(s) 745
AclWI GGATC 4 cut(s) 47, 301, 314, 337
AcsI RAATTY 2 cut(s) 131, 199
AfaI GTAC 1 cut(s) 374
AflIII ACRYGT 1 cut(s) 95
AgsI TTSAA 5 cut(s) 204, 239, 382, 616, 762
AhlI ACTAGT 1 cut(s) 770
AjnI CCWGG 1 cut(s) 4
AluBI AGCT 4 cut(s) 145, 189, 398, 455
AluI AGCT 4 cut(s) 145, 189, 398, 455
AlwI GGATC 4 cut(s) 47, 301, 314, 337
AoxI GGCC 1 cut(s) 651
ApeKI GCWGC 2 cut(s) 189, 398
ApoI RAATTY 2 cut(s) 131, 199
AsuHPI GGTGA 1 cut(s) 529
BamHI GGATCC 1 cut(s) 306
BbsI GAAGAC 1 cut(s) 739
BbvI GCAGC 2 cut(s) 176, 385
BccI CCATC 3 cut(s) 225, 381, 746
BceAI ACGGC 1 cut(s) 295
BciT130I CCWGG 1 cut(s) 6
BclI TGATCA 1 cut(s) 36
BcuI ACTAGT 1 cut(s) 770
BfaI CTAG 3 cut(s) 17, 146, 771
BfmI CTRYAG 1 cut(s) 283
BfuAI ACCTGC 1 cut(s) 745
BisI GCNGC 2 cut(s) 190, 399
BlsI GCNGC 2 cut(s) 191, 400
Bme1390I CCNGG 1 cut(s) 6
BmiI GGNNCC 1 cut(s) 308
BmrFI CCNGG 1 cut(s) 6
BmrI ACTGGG 1 cut(s) 529
BmsI GCATC 3 cut(s) 139, 281, 546
BmuI ACTGGG 1 cut(s) 529
BpiI GAAGAC 1 cut(s) 739
BplI GAGNNNNNCTC 2 cut(s) 209, 241
BpuEI CTTGAG 1 cut(s) 211
BsaBI GATNNNNATC 1 cut(s) 341
BsaJI CCNNGG 1 cut(s) 673
Bse1I ACTGG 2 cut(s) 535, 654
Bse3DI GCAATG 2 cut(s) 66, 674
Bse8I GATNNNNATC 1 cut(s) 341
BseBI CCWGG 1 cut(s) 6
BseDI CCNNGG 1 cut(s) 673
BseGI GGATG 3 cut(s) 561, 683, 784
BseJI GATNNNNATC 1 cut(s) 341
BseMI GCAATG 2 cut(s) 66, 674
BseNI ACTGG 2 cut(s) 535, 654
BseRI GAGGAG 1 cut(s) 230
BseXI GCAGC 2 cut(s) 176, 385
BshFI GGCC 1 cut(s) 653
BsnI GGCC 1 cut(s) 653
Bsp143I GATC 4 cut(s) 36, 52, 306, 342
Bsp19I CCATGG 1 cut(s) 673
BspANI GGCC 1 cut(s) 653
BspLI GGNNCC 1 cut(s) 308
BspMI ACCTGC 1 cut(s) 745
BspPI GGATC 4 cut(s) 47, 301, 314, 337
BsrDI GCAATG 2 cut(s) 66, 674
BsrI ACTGG 2 cut(s) 535, 654
BssECI CCNNGG 1 cut(s) 673
BssMI GATC 4 cut(s) 36, 52, 306, 342
BssT1I CCWWGG 1 cut(s) 673
Bst2UI CCWGG 1 cut(s) 6
Bst4CI ACNGT 1 cut(s) 299
Bst6I CTCTTC 3 cut(s) 245, 377, 626
BstAPI GCANNNNNTGC 1 cut(s) 556
BstC8I GCNNGC 1 cut(s) 489
BstDSI CCRYGG 1 cut(s) 673
BstF5I GGATG 3 cut(s) 561, 683, 784
BstKTI GATC 4 cut(s) 39, 55, 309, 345
BstMBI GATC 4 cut(s) 36, 52, 306, 342
BstMWI GCNNNNNNNGC 3 cut(s) 461, 497, 556
BstNI CCWGG 1 cut(s) 6
BstNSI RCATGY 2 cut(s) 99, 491
BstSCI CCNGG 1 cut(s) 4
BstSFI CTRYAG 1 cut(s) 283
BstV1I GCAGC 2 cut(s) 176, 385
BstV2I GAAGAC 1 cut(s) 739
BstX2I RGATCY 3 cut(s) 52, 306, 342
BstXI CCANNNNNNTGG 2 cut(s) 680, 775
BstYI RGATCY 3 cut(s) 52, 306, 342
BsuRI GGCC 1 cut(s) 653
BtgI CCRYGG 1 cut(s) 673
BtsCI GGATG 3 cut(s) 561, 683, 784
BtsIMutI CAGTG 1 cut(s) 304
BveI ACCTGC 1 cut(s) 745
Cac8I GCNNGC 1 cut(s) 489
Csp6I GTAC 1 cut(s) 373
CviAII CATG 6 cut(s) 96, 312, 488, 674, 701, 728
CviJI RGCY 9 cut(s) 71, 145, 189, 282, 319, 398, 455, 530, 653
CviKI_1 RGCY 9 cut(s) 71, 145, 189, 282, 319, 398, 455, 530, 653
CviQI GTAC 1 cut(s) 373
DpnI GATC 4 cut(s) 38, 54, 308, 344
DpnII GATC 4 cut(s) 36, 52, 306, 342
DrdI GACNNNNNNGTC 1 cut(s) 690
DseDI GACNNNNNNGTC 1 cut(s) 690
Eam1104I CTCTTC 3 cut(s) 245, 377, 626
EarI CTCTTC 3 cut(s) 245, 377, 626
Eco130I CCWWGG 1 cut(s) 673
EcoRI GAATTC 1 cut(s) 199
EcoRII CCWGG 1 cut(s) 4
EcoT14I CCWWGG 1 cut(s) 673
ErhI CCWWGG 1 cut(s) 673
FaeI CATG 6 cut(s) 99, 315, 491, 677, 704, 731
FalI AAGNNNNNCTT 2 cut(s) 444, 476
FatI CATG 6 cut(s) 95, 311, 487, 673, 700, 727
FauNDI CATATG 2 cut(s) 194, 496
FbaI TGATCA 1 cut(s) 36
Fnu4HI GCNGC 2 cut(s) 190, 399
FokI GGATG 3 cut(s) 568, 690, 791
Fsp4HI GCNGC 2 cut(s) 190, 399
FspBI CTAG 3 cut(s) 17, 146, 771
GluI GCNGC 2 cut(s) 190, 399
HaeIII GGCC 1 cut(s) 653
Hin1II CATG 6 cut(s) 99, 315, 491, 677, 704, 731
HindIII AAGCTT 1 cut(s) 453
HinfI GANTC 4 cut(s) 167, 224, 422, 758
HphI GGTGA 1 cut(s) 529
Hpy166II GTNNAC 1 cut(s) 683
Hpy188I TCNGA 1 cut(s) 79
Hpy188III TCNNGA 3 cut(s) 164, 228, 379
Hpy8I GTNNAC 1 cut(s) 683
HpyAV CCTTC 2 cut(s) 296, 603
HpyCH4III ACNGT 1 cut(s) 299
HpyCH4V TGCA 7 cut(s) 14, 59, 192, 272, 401, 464, 500
HpyF10VI GCNNNNNNNGC 3 cut(s) 461, 497, 556
Hsp92II CATG 6 cut(s) 99, 315, 491, 677, 704, 731
Ksp22I TGATCA 1 cut(s) 36
Kzo9I GATC 4 cut(s) 36, 52, 306, 342
LpnPI CCDG 8 cut(s) 18, 69, 333, 497, 548, 667, 732, 750
Lsp1109I GCAGC 2 cut(s) 176, 385
LweI GCATC 3 cut(s) 139, 281, 546
MaeI CTAG 3 cut(s) 17, 146, 771
MalI GATC 4 cut(s) 38, 54, 308, 344
MboI GATC 4 cut(s) 36, 52, 306, 342
MboII GAAGA 7 cut(s) 262, 394, 618, 628, 643, 744, 761
MfeI CAATTG 1 cut(s) 501
MflI RGATCY 3 cut(s) 52, 306, 342
MluCI AATT 7 cut(s) 131, 199, 240, 265, 359, 501, 712
MlyI GAGTC 1 cut(s) 218
MmeI TCCRAC 1 cut(s) 112
MnlI CCTC 5 cut(s) 208, 462, 520, 627, 775
MseI TTAA 4 cut(s) 126, 156, 339, 642
MslI CAYNNNNRTG 2 cut(s) 678, 773
MspR9I CCNGG 1 cut(s) 6
MunI CAATTG 1 cut(s) 501
MvaI CCWGG 1 cut(s) 6
MwoI GCNNNNNNNGC 3 cut(s) 461, 497, 556
NcoI CCATGG 1 cut(s) 673
NdeI CATATG 2 cut(s) 194, 496
NdeII GATC 4 cut(s) 36, 52, 306, 342
NlaIII CATG 6 cut(s) 99, 315, 491, 677, 704, 731
NlaIV GGNNCC 1 cut(s) 308
NspI RCATGY 2 cut(s) 99, 491
PaeI GCATGC 1 cut(s) 491
PciI ACATGT 1 cut(s) 95
PfeI GAWTC 3 cut(s) 167, 422, 758
PkrI GCNGC 2 cut(s) 191, 400
PleI GAGTC 1 cut(s) 218
PpsI GAGTC 1 cut(s) 218
PscI ACATGT 1 cut(s) 95
Psp6I CCWGG 1 cut(s) 4
PspGI CCWGG 1 cut(s) 4
PspN4I GGNNCC 1 cut(s) 308
PsuI RGATCY 3 cut(s) 52, 306, 342
RsaI GTAC 1 cut(s) 374
RsaNI GTAC 1 cut(s) 373
RseI CAYNNNNRTG 2 cut(s) 678, 773
SaqAI TTAA 4 cut(s) 126, 156, 339, 642
SatI GCNGC 2 cut(s) 190, 399
Sau3AI GATC 4 cut(s) 36, 52, 306, 342
SchI GAGTC 1 cut(s) 218
ScrFI CCNGG 1 cut(s) 6
SetI ASST 9 cut(s) 147, 191, 400, 457, 513, 614, 648, 664, 739
SfaNI GCATC 3 cut(s) 139, 281, 546
SfcI CTRYAG 1 cut(s) 283
SmiMI CAYNNNNRTG 2 cut(s) 678, 773
SmlI CTYRAG 1 cut(s) 226
SmoI CTYRAG 1 cut(s) 226
SpeI ACTAGT 1 cut(s) 770
SphI GCATGC 1 cut(s) 491
Sse9I AATT 7 cut(s) 131, 199, 240, 265, 359, 501, 712
SspMI CTAG 3 cut(s) 17, 146, 771
StyD4I CCNGG 1 cut(s) 4
StyI CCWWGG 1 cut(s) 673
TaaI ACNGT 1 cut(s) 299
TasI AATT 7 cut(s) 131, 199, 240, 265, 359, 501, 712
TatI WGTACW 1 cut(s) 372
TfiI GAWTC 3 cut(s) 167, 422, 758
Tru1I TTAA 4 cut(s) 126, 156, 339, 642
Tru9I TTAA 4 cut(s) 126, 156, 339, 642
TscAI CASTG 1 cut(s) 304
TseI GCWGC 2 cut(s) 189, 398
TspDTI ATGAA 4 cut(s) 173, 716, 762, 783
TspRI CASTG 1 cut(s) 304
XapI RAATTY 2 cut(s) 131, 199
XceI RCATGY 2 cut(s) 99, 491
XspI CTAG 3 cut(s) 17, 146, 771
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.