Rmu_sc0017874.1_g000002

Protein FAR1-RELATED SEQUENCE 5-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0017874.1
OG0000164
Physical Location & Seq
Forward (+)
9172 .. 9939
768 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0017874.1_g000002.1.cds

Sequence Viewer

Length: 768 bp
atgtcaagtagtcagcgagcagaaagtgggcatgctttttacaagaggtttgtttctaaagaaaacacattgttagattttatggttcagtttaattgggctgtcacacgtcaacggcatatggaattaatgaatgaccatgttaacatcaatgagaagccaaattttgcctctccctttgagatggtagaccaaatggctcgtgtttatacatatgaatgctttaaagaattttatgatcagttgtcgcagtgttgcaattacagatttgagctctcacatgacaatgatacatatatggtgtatattgcactgagaaagaaaatggagaaccccaagggttgtgaaattatttatgccaaagagtcagtatcatgcaactgcaaaaaaattgagacggctgggataccatgtagacatattgtggcatttctcatatttatacaacttgttgatagattgctagatcaatatatcttaaaaaggtggacgaaatcaggaaaagctgagacagttcttgatgaagtcggtgtggagataatagataacaaagatttgcttatcaggcggagtcggttatgccaatatgttgtagatgtaattgataagattatgggtagcgaagaagtaagtggtttgtttttagattcattaaagagtgttttggagaagtataattccatgatggctaatggtgacactgttaagtctgcaatagtgccagctgaacgcgaggttatcgatgcagtggagatgactccttgctaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
FAR1 MULE SWIM

Protein Analysis

255

Amino Acids

29.59

Weight (kDa)

5.65

Isoelectric Point (pI)

39.15

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000164)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g02320 FvH4_1g21472 FvH4_2g00813 FvH4_2g02512 FvH4_2g03921 FvH4_2g23460 FvH4_3g29141 FvH4_4g05791 FvH4_4g06321 FvH4_4g15595 FvH4_4g18162 FvH4_4g18163 FvH4_4g29541 FvH4_4g29541 FvH4_4g29541 FvH4_4g29541 FvH4_4g29541 FvH4_5g31093 FvH4_6g01982 FvH4_6g21931 FvH4_6g44691 FvH4_6g48541
prunus_persica Prupe.1G074100_v2.0.a1 Prupe.3G021400_v2.0.a1
pyrus_communis pycom02g18570 pycom14g00670
rosa_chinensis RchiOBHm_Chr1g0379201 RchiOBHm_Chr1g0379361 RchiOBHm_Chr4g0405981 RchiOBHm_Chr5g0073641 RchiOBHm_Chr5g0073651 RchiOBHm_Chr7g0236661
rosa_multiflora Rmu_co8179562.1_g000001 Rmu_co8343647.1_g000001 Rmu_sc0000041.1_g000017 Rmu_sc0000114.1_g000020 Rmu_sc0000286.1_g000006 Rmu_sc0000308.1_g000038 Rmu_sc0000365.1_g000061 Rmu_sc0000365.1_g000062 Rmu_sc0000538.1_g000060 Rmu_sc0000538.1_g000061 Rmu_sc0000586.1_g000016 Rmu_sc0000898.1_g000007 Rmu_sc0000913.1_g000003 Rmu_sc0000913.1_g000004 Rmu_sc0000996.1_g000006 Rmu_sc0000996.1_g000007 Rmu_sc0000998.1_g000003 Rmu_sc0001350.1_g000009 Rmu_sc0002079.1_g000009 Rmu_sc0002200.1_g000013 Rmu_sc0002226.1_g000025 Rmu_sc0002279.1_g000014 Rmu_sc0002478.1_g000014 Rmu_sc0002717.1_g000004 Rmu_sc0002868.1_g000027 Rmu_sc0002889.1_g000043 Rmu_sc0003023.1_g000001 Rmu_sc0003110.1_g000006 Rmu_sc0003226.1_g000028 Rmu_sc0003226.1_g000029 Rmu_sc0003337.1_g000053 Rmu_sc0003558.1_g000007 Rmu_sc0004345.1_g000014 Rmu_sc0004383.1_g000007 Rmu_sc0004888.1_g000021 Rmu_sc0005114.1_g000012 Rmu_sc0005223.1_g000019 Rmu_sc0005223.1_g000020 Rmu_sc0005639.1_g000025 Rmu_sc0005685.1_g000027 Rmu_sc0005992.1_g000002 Rmu_sc0006326.1_g000034 Rmu_sc0006326.1_g000035 Rmu_sc0007390.1_g000012 Rmu_sc0007451.1_g000006 Rmu_sc0007825.1_g000003 Rmu_sc0008600.1_g000023 Rmu_sc0009291.1_g000003 Rmu_sc0012046.1_g000001 Rmu_sc0012046.1_g000002 Rmu_sc0012710.1_g000001 Rmu_sc0015238.1_g000001 Rmu_sc0016125.1_g000003 Rmu_sc0016175.1_g000001 Rmu_sc0016898.1_g000001 Rmu_sc0017323.1_g000010 Rmu_sc0017874.1_g000002 Rmu_sc0019167.1_g000001 Rmu_sc0020815.1_g000006 Rmu_sc0025564.1_g000001 Rmu_sc0026418.1_g000001 Rmu_sc0035188.1_g000002 Rmu_sc0039254.1_g000001 Rmu_ssc0000120.1_g000015 Rmu_ssc0000120.1_g000016 Rmu_ssc0000330.1_g000023 Rmu_ssc0000433.1_g000004
rosa_roxburghii Rroxscaffold_1G00047130 Rroxscaffold_1G00051320 Rroxscaffold_1G00056600 Rroxscaffold_2G00109650 Rroxscaffold_2G00119980 Rroxscaffold_3G00222550 Rroxscaffold_3G00224980 Rroxscaffold_3G00251020 Rroxscaffold_6G00411190 Rroxscaffold_7G00166520 Rroxscaffold_7G00172920 Rroxscaffold_7G00191860 Rroxscaffold_7G00194430
rosa_rugosa Rorug01G0198900 Rorug01G0217300 Rorug01G0244500 Rorug02G0147400 Rorug02G0152200 Rorug02G0595500 Rorug02G0595600 Rorug03G0060500 Rorug03G0203000 Rorug03G0285800 Rorug04G0027200 Rorug04G0027300 Rorug04G0225800 Rorug05G0073400 Rorug05G0213300 Rorug05G0324600 Rorug05G0390900 Rorug05G0391000 Rorug05G0391100 Rorug05G0391200 Rorug05G0462900 Rorug05G0473000 Rorug06G0256500 Rorug07G0199000 Rorug07G0208800 Rorug07G0208800 Rorug07G0316600 Rorug07G0316700
rosa_samantha Rh2BG532400 Rh2CG581900 Rh3CG322600 Rh6AG079900 Rh6AG250800 Rh6AG496300 Rh6BG506100 Rh6CG126000 Rh6CG511700 Rh6DG109400 Rh6DG112700 Rh7CG104500 Rh7CG322000 Rh7CG431500
rosa_wichuraiana Rw0G020410 Rw1G009190 Rw1G014580 Rw1G021000 Rw1G022190 Rw2G025900 Rw2G029920 Rw2G037530 Rw3G018560 Rw3G020560 Rw4G008500 Rw4G022520 Rw5G019030 Rw5G031180 Rw5G044830 Rw6G005010 Rw6G006890 Rw6G011330 Rw6G011380 Rw6G023900 Rw7G028490 Rw7G030170 Rw7G030370 Rw7G032030 Rw7G032040

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 2 cut(s) 189, 415
AccII CGCG 1 cut(s) 732
AciI CCGC 1 cut(s) 568
AcsI RAATTY 2 cut(s) 163, 230
AflIII ACRYGT 1 cut(s) 107
AjiI CACGTC 1 cut(s) 110
AluBI AGCT 3 cut(s) 274, 506, 725
AluI AGCT 3 cut(s) 274, 506, 725
Alw21I GWGCWC 1 cut(s) 276
Alw26I GTCTC 2 cut(s) 389, 503
ApoI RAATTY 2 cut(s) 163, 230
AseI ATTAAT 1 cut(s) 128
AsuHPI GGTGA 1 cut(s) 707
BanII GRGCYC 1 cut(s) 276
BauI CACGAG 1 cut(s) 201
Bbv12I GWGCWC 1 cut(s) 276
BccI CCATC 2 cut(s) 178, 679
BceAI ACGGC 2 cut(s) 131, 414
BciVI GTATCC 1 cut(s) 399
BclI TGATCA 1 cut(s) 238
BcoDI GTCTC 2 cut(s) 389, 503
BfaI CTAG 1 cut(s) 464
BfuI GTATCC 1 cut(s) 399
BmgBI CACGTC 1 cut(s) 110
BmsI GCATC 1 cut(s) 733
Bsa29I ATCGAT 1 cut(s) 741
BsaJI CCNNGG 1 cut(s) 336
BseCI ATCGAT 1 cut(s) 741
BseDI CCNNGG 1 cut(s) 336
BseMII CTCAG 2 cut(s) 305, 498
BseYI CCCAGC 1 cut(s) 401
Bsh1236I CGCG 1 cut(s) 732
BshVI ATCGAT 1 cut(s) 741
BsiHKAI GWGCWC 1 cut(s) 276
BsmAI GTCTC 2 cut(s) 389, 503
BsmBI CGTCTC 1 cut(s) 389
BsmI GAATGC 1 cut(s) 224
Bsp1286I GDGCHC 1 cut(s) 276
Bsp143I GATC 2 cut(s) 238, 466
BspACI CCGC 1 cut(s) 568
BspCNI CTCAG 2 cut(s) 306, 499
BspDI ATCGAT 1 cut(s) 741
BspFNI CGCG 1 cut(s) 732
BssECI CCNNGG 1 cut(s) 336
BssMI GATC 2 cut(s) 238, 466
BssSI CACGAG 1 cut(s) 201
BssT1I CCWWGG 1 cut(s) 336
Bst2BI CACGAG 1 cut(s) 201
Bst4CI ACNGT 2 cut(s) 514, 703
BstC8I GCNNGC 3 cut(s) 18, 33, 723
BstDEI CTNAG 2 cut(s) 314, 507
BstFNI CGCG 1 cut(s) 732
BstKTI GATC 2 cut(s) 241, 469
BstMAI GTCTC 2 cut(s) 389, 503
BstMBI GATC 2 cut(s) 238, 466
BstMWI GCNNNNNNNGC 1 cut(s) 565
BstNSI RCATGY 1 cut(s) 35
BstUI CGCG 1 cut(s) 732
Bsu15I ATCGAT 1 cut(s) 741
BsuI GTATCC 1 cut(s) 399
BsuTUI ATCGAT 1 cut(s) 741
BtrI CACGTC 1 cut(s) 110
BtsI GCAGTG 2 cut(s) 257, 753
BtsIMutI CAGTG 4 cut(s) 257, 311, 699, 753
Cac8I GCNNGC 3 cut(s) 18, 33, 723
ClaI ATCGAT 1 cut(s) 741
CviAII CATG 6 cut(s) 32, 140, 281, 375, 411, 682
CviJI RGCY 8 cut(s) 101, 160, 200, 274, 401, 506, 689, 725
CviKI_1 RGCY 8 cut(s) 101, 160, 200, 274, 401, 506, 689, 725
DdeI CTNAG 2 cut(s) 314, 507
DpnI GATC 2 cut(s) 240, 468
DpnII GATC 2 cut(s) 238, 466
DraI TTTAAA 1 cut(s) 226
EciI GGCGGA 1 cut(s) 583
Ecl136II GAGCTC 1 cut(s) 274
Eco130I CCWWGG 1 cut(s) 336
Eco24I GRGCYC 1 cut(s) 276
Eco53kI GAGCTC 1 cut(s) 274
EcoICRI GAGCTC 1 cut(s) 274
EcoT14I CCWWGG 1 cut(s) 336
EcoT38I GRGCYC 1 cut(s) 276
ErhI CCWWGG 1 cut(s) 336
Esp3I CGTCTC 1 cut(s) 389
FaeI CATG 6 cut(s) 35, 143, 284, 378, 414, 685
FalI AAGNNNNNCTT 2 cut(s) 543, 575
FatI CATG 6 cut(s) 31, 139, 280, 374, 410, 681
FauNDI CATATG 2 cut(s) 120, 214
FbaI TGATCA 1 cut(s) 238
FblI GTMKAC 2 cut(s) 189, 415
FriOI GRGCYC 1 cut(s) 276
FspBI CTAG 1 cut(s) 464
GsaI CCCAGC 1 cut(s) 405
Hin1II CATG 6 cut(s) 35, 143, 284, 378, 414, 685
HincII GTYRAC 2 cut(s) 113, 145
HindII GTYRAC 2 cut(s) 113, 145
HinfI GANTC 4 cut(s) 365, 571, 647, 757
HpaI GTTAAC 1 cut(s) 145
HphI GGTGA 1 cut(s) 707
Hpy166II GTNNAC 5 cut(s) 113, 145, 190, 416, 489
Hpy188III TCNNGA 2 cut(s) 498, 518
Hpy8I GTNNAC 5 cut(s) 113, 145, 190, 416, 489
HpyCH4III ACNGT 2 cut(s) 514, 703
HpyCH4IV ACGT 1 cut(s) 109
HpyCH4V TGCA 6 cut(s) 258, 311, 378, 384, 713, 746
HpyF10VI GCNNNNNNNGC 1 cut(s) 565
HpyF3I CTNAG 2 cut(s) 314, 507
HpySE526I ACGT 1 cut(s) 109
Hsp92II CATG 6 cut(s) 35, 143, 284, 378, 414, 685
Ksp22I TGATCA 1 cut(s) 238
KspAI GTTAAC 1 cut(s) 145
Kzo9I GATC 2 cut(s) 238, 466
LpnPI CCDG 4 cut(s) 387, 483, 550, 735
LweI GCATC 1 cut(s) 733
MaeI CTAG 1 cut(s) 464
MaeII ACGT 1 cut(s) 109
MaeIII GTNAC 2 cut(s) 103, 695
MalI GATC 2 cut(s) 240, 468
MboI GATC 2 cut(s) 238, 466
MboII GAAGA 1 cut(s) 635
MhlI GDGCHC 1 cut(s) 276
MluCI AATT 9 cut(s) 94, 125, 163, 230, 259, 348, 390, 600, 676
MlyI GAGTC 3 cut(s) 374, 580, 751
MnlI CCTC 3 cut(s) 39, 181, 727
MseI TTAA 7 cut(s) 93, 128, 144, 225, 479, 653, 705
MslI CAYNNNNRTG 2 cut(s) 217, 285
MspA1I CMGCKG 1 cut(s) 725
Mva1269I GAATGC 1 cut(s) 224
MvnI CGCG 1 cut(s) 732
MwoI GCNNNNNNNGC 1 cut(s) 565
NdeI CATATG 2 cut(s) 120, 214
NdeII GATC 2 cut(s) 238, 466
NlaIII CATG 6 cut(s) 35, 143, 284, 378, 414, 685
NmuCI GTSAC 2 cut(s) 103, 695
NspI RCATGY 1 cut(s) 35
PaeI GCATGC 1 cut(s) 35
PctI GAATGC 1 cut(s) 224
PfeI GAWTC 1 cut(s) 647
PleI GAGTC 3 cut(s) 373, 579, 751
PpsI GAGTC 3 cut(s) 373, 579, 751
PshBI ATTAAT 1 cut(s) 128
Psp124BI GAGCTC 1 cut(s) 276
PspFI CCCAGC 1 cut(s) 401
PvuII CAGCTG 1 cut(s) 725
RseI CAYNNNNRTG 2 cut(s) 217, 285
SacI GAGCTC 1 cut(s) 276
SaqAI TTAA 7 cut(s) 93, 128, 144, 225, 479, 653, 705
Sau3AI GATC 2 cut(s) 238, 466
SchI GAGTC 3 cut(s) 374, 580, 751
SduI GDGCHC 1 cut(s) 276
SetI ASST 7 cut(s) 50, 112, 276, 488, 508, 727, 738
SfaNI GCATC 1 cut(s) 733
SmiMI CAYNNNNRTG 2 cut(s) 217, 285
SphI GCATGC 1 cut(s) 35
Sse9I AATT 9 cut(s) 94, 125, 163, 230, 259, 348, 390, 600, 676
SsiI CCGC 1 cut(s) 568
SspMI CTAG 1 cut(s) 464
SstI GAGCTC 1 cut(s) 276
StyI CCWWGG 1 cut(s) 336
TaaI ACNGT 2 cut(s) 514, 703
TaiI ACGT 1 cut(s) 112
TaqI TCGA 1 cut(s) 741
TasI AATT 9 cut(s) 94, 125, 163, 230, 259, 348, 390, 600, 676
TfiI GAWTC 1 cut(s) 647
Tru1I TTAA 7 cut(s) 93, 128, 144, 225, 479, 653, 705
Tru9I TTAA 7 cut(s) 93, 128, 144, 225, 479, 653, 705
TscAI CASTG 4 cut(s) 257, 318, 706, 753
TseFI GTSAC 2 cut(s) 103, 695
Tsp45I GTSAC 2 cut(s) 103, 695
TspDTI ATGAA 4 cut(s) 146, 231, 537, 639
TspRI CASTG 4 cut(s) 257, 318, 706, 753
VspI ATTAAT 1 cut(s) 128
XapI RAATTY 2 cut(s) 163, 230
XceI RCATGY 1 cut(s) 35
XmiI GTMKAC 2 cut(s) 189, 415
XspI CTAG 1 cut(s) 464
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.