Rmu_sc0004888.1_g000021

Protein FAR1-RELATED SEQUENCE 5-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0004888.1
OG0000164
Physical Location & Seq
Reverse (-)
102472 .. 104671
2200 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0004888.1_g000021.1.cds

Sequence Viewer

Length: 1104 bp
atgccaagaggaagtcccccaaaaatgataattgctgatcaagatcctgctatgaagattgccatttcccaagttcttcctaacacattccataggtttcaacttatgaaagaggatgacaatcaaagattgtatttgatcaagaaaagaagtgatcagattcaaaaggatcaggaaattgtttatgacaagcatacgaaccttgcttcatgtacttgcaaaaaatttcaaagtgaaggaatcccctgtaggcacatcttgggatatttcctgaaagttcaggaagtagattacttgcctgaccaatatattttgaacagatgcactaaagctacaaatgctactgtagctaaggacctagatgggttggagataagagatacaaatgcattggtggtgaagcgtagtaaattatgtcatcatgcttcacttgttattgataaagtccttacaagtcctcatgaagctcagaccatatttatcgaggctcttgacaatgttcttgacaagctcaaacaaatgcaagtcaatagtagtgaaagtgcaagtatcggtaagaagttgtcaagtgatgttcaatataggtataatgagccaaagattatcaaagcaaagggttatggaaaaaggcttaagaagtcaaaggagaagatagagagaaagagtagtacaaggaaatgtcatggatgtggtttgtatgggcaattacatgataaacggaactgtctggcgcttaatatgcctaacgatagatccagggcttataggcttattctttttgggtatttcaatttggctctttccagtcgttcctcttcctctctcgtgcgaggtcattcaactcatatgctttcaattcaatggcgaggtcattcgtgcgagtttcgttctgtccgagcgcaatttcgattcaactcggatgctttctcttctctgctgacggagagttcgcgtcttgggtgtacgtctaatgtgaccggacaggttgctgtcggaggtgattgggatggagatcggagactggggcgttgggatttcgatctgtttggtttttatttaatgacggtggctgcacggagactgggtgagcggaagatgtggtga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
FAR1 MULE SWIM

Protein Analysis

367

Amino Acids

41.97

Weight (kDa)

9.63

Isoelectric Point (pI)

47.77

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000164)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g02320 FvH4_1g21472 FvH4_2g00813 FvH4_2g02512 FvH4_2g03921 FvH4_2g23460 FvH4_3g29141 FvH4_4g05791 FvH4_4g06321 FvH4_4g15595 FvH4_4g18162 FvH4_4g18163 FvH4_4g29541 FvH4_4g29541 FvH4_4g29541 FvH4_4g29541 FvH4_4g29541 FvH4_5g31093 FvH4_6g01982 FvH4_6g21931 FvH4_6g44691 FvH4_6g48541
prunus_persica Prupe.1G074100_v2.0.a1 Prupe.3G021400_v2.0.a1
pyrus_communis pycom02g18570 pycom14g00670
rosa_chinensis RchiOBHm_Chr1g0379201 RchiOBHm_Chr1g0379361 RchiOBHm_Chr4g0405981 RchiOBHm_Chr5g0073641 RchiOBHm_Chr5g0073651 RchiOBHm_Chr7g0236661
rosa_multiflora Rmu_co8179562.1_g000001 Rmu_co8343647.1_g000001 Rmu_sc0000041.1_g000017 Rmu_sc0000114.1_g000020 Rmu_sc0000286.1_g000006 Rmu_sc0000308.1_g000038 Rmu_sc0000365.1_g000061 Rmu_sc0000365.1_g000062 Rmu_sc0000538.1_g000060 Rmu_sc0000538.1_g000061 Rmu_sc0000586.1_g000016 Rmu_sc0000898.1_g000007 Rmu_sc0000913.1_g000003 Rmu_sc0000913.1_g000004 Rmu_sc0000996.1_g000006 Rmu_sc0000996.1_g000007 Rmu_sc0000998.1_g000003 Rmu_sc0001350.1_g000009 Rmu_sc0002079.1_g000009 Rmu_sc0002200.1_g000013 Rmu_sc0002226.1_g000025 Rmu_sc0002279.1_g000014 Rmu_sc0002478.1_g000014 Rmu_sc0002717.1_g000004 Rmu_sc0002868.1_g000027 Rmu_sc0002889.1_g000043 Rmu_sc0003023.1_g000001 Rmu_sc0003110.1_g000006 Rmu_sc0003226.1_g000028 Rmu_sc0003226.1_g000029 Rmu_sc0003337.1_g000053 Rmu_sc0003558.1_g000007 Rmu_sc0004345.1_g000014 Rmu_sc0004383.1_g000007 Rmu_sc0004888.1_g000021 Rmu_sc0005114.1_g000012 Rmu_sc0005223.1_g000019 Rmu_sc0005223.1_g000020 Rmu_sc0005639.1_g000025 Rmu_sc0005685.1_g000027 Rmu_sc0005992.1_g000002 Rmu_sc0006326.1_g000034 Rmu_sc0006326.1_g000035 Rmu_sc0007390.1_g000012 Rmu_sc0007451.1_g000006 Rmu_sc0007825.1_g000003 Rmu_sc0008600.1_g000023 Rmu_sc0009291.1_g000003 Rmu_sc0012046.1_g000001 Rmu_sc0012046.1_g000002 Rmu_sc0012710.1_g000001 Rmu_sc0015238.1_g000001 Rmu_sc0016125.1_g000003 Rmu_sc0016175.1_g000001 Rmu_sc0016898.1_g000001 Rmu_sc0017323.1_g000010 Rmu_sc0017874.1_g000002 Rmu_sc0019167.1_g000001 Rmu_sc0020815.1_g000006 Rmu_sc0025564.1_g000001 Rmu_sc0026418.1_g000001 Rmu_sc0035188.1_g000002 Rmu_sc0039254.1_g000001 Rmu_ssc0000120.1_g000015 Rmu_ssc0000120.1_g000016 Rmu_ssc0000330.1_g000023 Rmu_ssc0000433.1_g000004
rosa_roxburghii Rroxscaffold_1G00047130 Rroxscaffold_1G00051320 Rroxscaffold_1G00056600 Rroxscaffold_2G00109650 Rroxscaffold_2G00119980 Rroxscaffold_3G00222550 Rroxscaffold_3G00224980 Rroxscaffold_3G00251020 Rroxscaffold_6G00411190 Rroxscaffold_7G00166520 Rroxscaffold_7G00172920 Rroxscaffold_7G00191860 Rroxscaffold_7G00194430
rosa_rugosa Rorug01G0198900 Rorug01G0217300 Rorug01G0244500 Rorug02G0147400 Rorug02G0152200 Rorug02G0595500 Rorug02G0595600 Rorug03G0060500 Rorug03G0203000 Rorug03G0285800 Rorug04G0027200 Rorug04G0027300 Rorug04G0225800 Rorug05G0073400 Rorug05G0213300 Rorug05G0324600 Rorug05G0390900 Rorug05G0391000 Rorug05G0391100 Rorug05G0391200 Rorug05G0462900 Rorug05G0473000 Rorug06G0256500 Rorug07G0199000 Rorug07G0208800 Rorug07G0208800 Rorug07G0316600 Rorug07G0316700
rosa_samantha Rh2BG532400 Rh2CG581900 Rh3CG322600 Rh6AG079900 Rh6AG250800 Rh6AG496300 Rh6BG506100 Rh6CG126000 Rh6CG511700 Rh6DG109400 Rh6DG112700 Rh7CG104500 Rh7CG322000 Rh7CG431500
rosa_wichuraiana Rw0G020410 Rw1G009190 Rw1G014580 Rw1G021000 Rw1G022190 Rw2G025900 Rw2G029920 Rw2G037530 Rw3G018560 Rw3G020560 Rw4G008500 Rw4G022520 Rw5G019030 Rw5G031180 Rw5G044830 Rw6G005010 Rw6G006890 Rw6G011330 Rw6G011380 Rw6G023900 Rw7G028490 Rw7G030170 Rw7G030370 Rw7G032030 Rw7G032040

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 1090
AccII CGCG 1 cut(s) 952
AciI CCGC 1 cut(s) 1090
AclWI GGATC 3 cut(s) 38, 177, 747
AcsI RAATTY 1 cut(s) 224
AfaI GTAC 3 cut(s) 214, 670, 964
AflII CTTAAG 1 cut(s) 632
AjnI CCWGG 1 cut(s) 755
AluBI AGCT 4 cut(s) 332, 350, 467, 511
AluI AGCT 4 cut(s) 332, 350, 467, 511
Alw26I GTCTC 2 cut(s) 1012, 1072
AlwI GGATC 3 cut(s) 38, 177, 747
ApeKI GCWGC 1 cut(s) 1070
ApoI RAATTY 1 cut(s) 224
ArsI GACNNNNNNTTYG 2 cut(s) 931, 963
AspLEI GCGC 2 cut(s) 733, 901
AspS9I GGNCC 1 cut(s) 355
AsuHPI GGTGA 3 cut(s) 409, 1010, 1097
AvaII GGWCC 1 cut(s) 355
BauI CACGAG 1 cut(s) 824
BbvI GCAGC 1 cut(s) 1057
BccI CCATC 2 cut(s) 356, 1001
BciT130I CCWGG 1 cut(s) 757
BclI TGATCA 3 cut(s) 37, 138, 154
BcoDI GTCTC 2 cut(s) 1012, 1072
BfaI CTAG 1 cut(s) 359
BfmI CTRYAG 2 cut(s) 247, 345
BfoI RGCGCY 1 cut(s) 734
BfrI CTTAAG 1 cut(s) 632
BisI GCNGC 1 cut(s) 1071
BlsI GCNGC 1 cut(s) 1072
Bme1390I CCNGG 1 cut(s) 757
Bme18I GGWCC 1 cut(s) 355
BmgT120I GGNCC 1 cut(s) 355
BmrFI CCNGG 1 cut(s) 757
BmrI ACTGGG 2 cut(s) 1031, 1091
BmsI GCATC 2 cut(s) 311, 910
BmuI ACTGGG 2 cut(s) 1031, 1091
Bpu10I CCTNAGC 1 cut(s) 351
BsaBI GATNNNNATC 4 cut(s) 42, 120, 1011, 1038
BsaJI CCNNGG 1 cut(s) 756
BsaWI WCCGGW 1 cut(s) 977
BsaXI ACNNNNNCTCC 2 cut(s) 1069, 1099
Bse1I ACTGG 3 cut(s) 804, 1026, 1086
Bse8I GATNNNNATC 4 cut(s) 42, 120, 1011, 1038
BseBI CCWGG 1 cut(s) 757
BseDI CCNNGG 1 cut(s) 756
BseGI GGATG 4 cut(s) 121, 692, 925, 1012
BseJI GATNNNNATC 4 cut(s) 42, 120, 1011, 1038
BseMII CTCAG 1 cut(s) 482
BseNI ACTGG 3 cut(s) 804, 1026, 1086
BseXI GCAGC 1 cut(s) 1057
BsgI GTGCAG 1 cut(s) 1056
Bsh1236I CGCG 1 cut(s) 952
BsiSI CCGG 1 cut(s) 978
BsmAI GTCTC 2 cut(s) 1012, 1072
Bsp143I GATC 8 cut(s) 37, 43, 138, 154, 169, 752, 1012, 1039
BspACI CCGC 1 cut(s) 1090
BspCNI CTCAG 1 cut(s) 481
BspFNI CGCG 1 cut(s) 952
BspHI TCATGA 1 cut(s) 460
BspPI GGATC 3 cut(s) 38, 177, 747
BspTI CTTAAG 1 cut(s) 632
BsrBI CCGCTC 1 cut(s) 1090
BsrI ACTGG 3 cut(s) 804, 1026, 1086
BssECI CCNNGG 1 cut(s) 756
BssMI GATC 8 cut(s) 37, 43, 138, 154, 169, 752, 1012, 1039
BssSI CACGAG 1 cut(s) 824
Bst2BI CACGAG 1 cut(s) 824
Bst2UI CCWGG 1 cut(s) 757
Bst4CI ACNGT 3 cut(s) 346, 725, 1066
Bst6I CTCTTC 2 cut(s) 820, 934
BstAFI CTTAAG 1 cut(s) 632
BstDEI CTNAG 2 cut(s) 351, 468
BstF5I GGATG 4 cut(s) 121, 692, 925, 1012
BstFNI CGCG 1 cut(s) 952
BstH2I RGCGCY 1 cut(s) 734
BstHHI GCGC 2 cut(s) 733, 901
BstKTI GATC 8 cut(s) 40, 46, 141, 157, 172, 755, 1015, 1042
BstMAI GTCTC 2 cut(s) 1012, 1072
BstMBI GATC 8 cut(s) 37, 43, 138, 154, 169, 752, 1012, 1039
BstMWI GCNNNNNNNGC 3 cut(s) 338, 347, 739
BstNI CCWGG 1 cut(s) 757
BstSCI CCNGG 1 cut(s) 755
BstSFI CTRYAG 2 cut(s) 247, 345
BstUI CGCG 1 cut(s) 952
BstV1I GCAGC 1 cut(s) 1057
BstX2I RGATCY 2 cut(s) 43, 752
BstYI RGATCY 2 cut(s) 43, 752
BtsCI GGATG 4 cut(s) 121, 692, 925, 1012
CciI TCATGA 1 cut(s) 460
CfoI GCGC 2 cut(s) 733, 901
Cfr13I GGNCC 1 cut(s) 355
CseI GACGC 1 cut(s) 941
Csp6I GTAC 3 cut(s) 213, 669, 963
CviAII CATG 5 cut(s) 210, 422, 461, 683, 710
CviQI GTAC 3 cut(s) 213, 669, 963
DdeI CTNAG 2 cut(s) 351, 468
DpnI GATC 8 cut(s) 39, 45, 140, 156, 171, 754, 1014, 1041
DpnII GATC 8 cut(s) 37, 43, 138, 154, 169, 752, 1012, 1039
Eam1104I CTCTTC 2 cut(s) 820, 934
EarI CTCTTC 2 cut(s) 820, 934
Eco47I GGWCC 1 cut(s) 355
EcoO109I RGGNCCY 1 cut(s) 355
EcoRII CCWGG 1 cut(s) 755
EcoT22I ATGCAT 1 cut(s) 391
FaeI CATG 5 cut(s) 213, 425, 464, 686, 713
FatI CATG 5 cut(s) 209, 421, 460, 682, 709
FauNDI CATATG 1 cut(s) 846
FbaI TGATCA 3 cut(s) 37, 138, 154
Fnu4HI GCNGC 1 cut(s) 1071
FokI GGATG 4 cut(s) 128, 699, 932, 1019
Fsp4HI GCNGC 1 cut(s) 1071
FspBI CTAG 1 cut(s) 359
GlaI GCGC 2 cut(s) 732, 900
GluI GCNGC 1 cut(s) 1071
HaeII RGCGCY 1 cut(s) 734
HapII CCGG 1 cut(s) 978
HgaI GACGC 1 cut(s) 941
HhaI GCGC 2 cut(s) 733, 901
Hin1II CATG 5 cut(s) 213, 425, 464, 686, 713
Hin6I GCGC 2 cut(s) 731, 899
HinP1I GCGC 2 cut(s) 731, 899
HinfI GANTC 3 cut(s) 160, 240, 909
HpaII CCGG 1 cut(s) 978
HphI GGTGA 3 cut(s) 409, 1010, 1097
Hpy166II GTNNAC 1 cut(s) 963
Hpy188I TCNGA 6 cut(s) 159, 471, 896, 919, 995, 1017
Hpy188III TCNNGA 8 cut(s) 41, 142, 173, 271, 281, 461, 491, 503
Hpy8I GTNNAC 1 cut(s) 963
HpyAV CCTTC 1 cut(s) 230
HpyCH4III ACNGT 3 cut(s) 346, 725, 1066
HpyCH4IV ACGT 1 cut(s) 965
HpyCH4V TGCA 6 cut(s) 219, 324, 389, 523, 545, 1073
HpyF10VI GCNNNNNNNGC 3 cut(s) 338, 347, 739
HpyF3I CTNAG 2 cut(s) 351, 468
HpySE526I ACGT 1 cut(s) 965
Hsp92II CATG 5 cut(s) 213, 425, 464, 686, 713
HspAI GCGC 2 cut(s) 731, 899
Ksp22I TGATCA 3 cut(s) 37, 138, 154
Kzo9I GATC 8 cut(s) 37, 43, 138, 154, 169, 752, 1012, 1039
Lsp1109I GCAGC 1 cut(s) 1057
LweI GCATC 2 cut(s) 311, 910
MaeI CTAG 1 cut(s) 359
MaeII ACGT 1 cut(s) 965
MaeIII GTNAC 1 cut(s) 973
MalI GATC 8 cut(s) 39, 45, 140, 156, 171, 754, 1014, 1041
MbiI CCGCTC 1 cut(s) 1090
MboI GATC 8 cut(s) 37, 43, 138, 154, 169, 752, 1012, 1039
MboII GAAGA 5 cut(s) 67, 68, 661, 807, 921
MflI RGATCY 2 cut(s) 43, 752
MluCI AATT 8 cut(s) 30, 177, 224, 410, 704, 790, 855, 902
MmeI TCCRAC 2 cut(s) 348, 973
MnlI CCTC 8 cut(s) 106, 468, 478, 823, 824, 829, 860, 989
Mph1103I ATGCAT 1 cut(s) 391
MseI TTAA 3 cut(s) 633, 735, 1058
MslI CAYNNNNRTG 1 cut(s) 687
MspCI CTTAAG 1 cut(s) 632
MspI CCGG 1 cut(s) 978
MspR9I CCNGG 1 cut(s) 757
MvaI CCWGG 1 cut(s) 757
MvnI CGCG 1 cut(s) 952
MwoI GCNNNNNNNGC 3 cut(s) 338, 347, 739
NdeI CATATG 1 cut(s) 846
NdeII GATC 8 cut(s) 37, 43, 138, 154, 169, 752, 1012, 1039
NlaIII CATG 5 cut(s) 213, 425, 464, 686, 713
NmuCI GTSAC 1 cut(s) 973
NsiI ATGCAT 1 cut(s) 391
PagI TCATGA 1 cut(s) 460
PcsI WCGNNNNNNNCGW 1 cut(s) 892
PfeI GAWTC 3 cut(s) 160, 240, 909
PkrI GCNGC 1 cut(s) 1072
PpuMI RGGWCCY 1 cut(s) 355
Psp5II RGGWCCY 1 cut(s) 355
Psp6I CCWGG 1 cut(s) 755
PspGI CCWGG 1 cut(s) 755
PspPI GGNCC 1 cut(s) 355
PspPPI RGGWCCY 1 cut(s) 355
PsuI RGATCY 2 cut(s) 43, 752
RsaI GTAC 3 cut(s) 214, 670, 964
RsaNI GTAC 3 cut(s) 213, 669, 963
RseI CAYNNNNRTG 1 cut(s) 687
SaqAI TTAA 3 cut(s) 633, 735, 1058
SatI GCNGC 1 cut(s) 1071
Sau3AI GATC 8 cut(s) 37, 43, 138, 154, 169, 752, 1012, 1039
Sau96I GGNCC 1 cut(s) 355
ScrFI CCNGG 1 cut(s) 757
SfaNI GCATC 2 cut(s) 311, 910
SfcI CTRYAG 2 cut(s) 247, 345
SinI GGWCC 1 cut(s) 355
SmiMI CAYNNNNRTG 1 cut(s) 687
SmlI CTYRAG 1 cut(s) 632
SmoI CTYRAG 1 cut(s) 632
Sse9I AATT 8 cut(s) 30, 177, 224, 410, 704, 790, 855, 902
SsiI CCGC 1 cut(s) 1090
SspMI CTAG 1 cut(s) 359
StyD4I CCNGG 1 cut(s) 755
TaaI ACNGT 3 cut(s) 346, 725, 1066
TaiI ACGT 1 cut(s) 968
TaqI TCGA 3 cut(s) 483, 907, 1038
TasI AATT 8 cut(s) 30, 177, 224, 410, 704, 790, 855, 902
TatI WGTACW 2 cut(s) 212, 668
TfiI GAWTC 3 cut(s) 160, 240, 909
Tru1I TTAA 3 cut(s) 633, 735, 1058
Tru9I TTAA 3 cut(s) 633, 735, 1058
TseFI GTSAC 1 cut(s) 973
TseI GCWGC 1 cut(s) 1070
Tsp45I GTSAC 1 cut(s) 973
TspDTI ATGAA 4 cut(s) 68, 122, 198, 477
TspGWI ACGGA 3 cut(s) 733, 956, 1090
Vha464I CTTAAG 1 cut(s) 632
VpaK11BI GGWCC 1 cut(s) 355
XapI RAATTY 1 cut(s) 224
XspI CTAG 1 cut(s) 359
Zsp2I ATGCAT 1 cut(s) 391
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.