Rorug05G0391200

Protein FAR1-RELATED SEQUENCE 5-like

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
Physical Location & Seq
Forward (+)
53343886 .. 53344506
621 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0391200.1

Sequence Viewer

Length: 621 bp
ATGTCAAAAAATGACAAACACCTGCTCCGCCCCCATTACTATCGTAGCCAAATCGAGTCTGCGACGAAAGATAGACACCAACGCCGATGCAGCGAAATTGAGTTCTTTACAATAAGCGAACCCATCAAGTTGTTCGAGTTTCCACCAACCTGTAATGCGTTTCGGATCCAATTCAATCTCCACAAGTCATACCAAATCTTTTTGACTGAAGAACATGGTATTTGTGAAGGAGGAGTGGTTAACCACAAAGATGAACAAGTCATTACGTTCCCTCGTAGCAGTACACAATCTTATTCGATGATCGTTAAGGTTCTTAGAAGCATGGGTGTTCCGGAACATGAGCAGCCAAGTATTATTGCCAAGATATATGAAGTGGTCTTTGCAACCGAGCAGCAGTCTTGTGAAGTTTCTATTAATGTGGACATATATAAAAAGGCCAAACCGATTCTTTCGACCGTGGAGAAGTTGGAGAAAGAGATATTTGAGAGGTCGTCTGCTATTTGTTTGGAGGACTTTGAGGCTGGTGTTGTAACTACTCGCTTGCGCTGCTTAATAACGCAGTACACCAAATACATCAGAAACCTTGAGCCTTCTGCTCAAGAATGTTTAGCAACAAGTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

206

Amino Acids

23.87

Weight (kDa)

6.66

Isoelectric Point (pI)

65.98

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000164)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g02320 FvH4_1g21472 FvH4_2g00813 FvH4_2g02512 FvH4_2g03921 FvH4_2g23460 FvH4_3g29141 FvH4_4g05791 FvH4_4g06321 FvH4_4g15595 FvH4_4g18162 FvH4_4g18163 FvH4_4g29541 FvH4_4g29541 FvH4_4g29541 FvH4_4g29541 FvH4_4g29541 FvH4_5g31093 FvH4_6g01982 FvH4_6g21931 FvH4_6g44691 FvH4_6g48541
prunus_persica Prupe.1G074100_v2.0.a1 Prupe.3G021400_v2.0.a1
pyrus_communis pycom02g18570 pycom14g00670
rosa_chinensis RchiOBHm_Chr1g0379201 RchiOBHm_Chr1g0379361 RchiOBHm_Chr4g0405981 RchiOBHm_Chr5g0073641 RchiOBHm_Chr5g0073651 RchiOBHm_Chr7g0236661
rosa_multiflora Rmu_co8179562.1_g000001 Rmu_co8343647.1_g000001 Rmu_sc0000041.1_g000017 Rmu_sc0000114.1_g000020 Rmu_sc0000286.1_g000006 Rmu_sc0000308.1_g000038 Rmu_sc0000365.1_g000061 Rmu_sc0000365.1_g000062 Rmu_sc0000538.1_g000060 Rmu_sc0000538.1_g000061 Rmu_sc0000586.1_g000016 Rmu_sc0000898.1_g000007 Rmu_sc0000913.1_g000003 Rmu_sc0000913.1_g000004 Rmu_sc0000996.1_g000006 Rmu_sc0000996.1_g000007 Rmu_sc0000998.1_g000003 Rmu_sc0001350.1_g000009 Rmu_sc0002079.1_g000009 Rmu_sc0002200.1_g000013 Rmu_sc0002226.1_g000025 Rmu_sc0002279.1_g000014 Rmu_sc0002478.1_g000014 Rmu_sc0002717.1_g000004 Rmu_sc0002868.1_g000027 Rmu_sc0002889.1_g000043 Rmu_sc0003023.1_g000001 Rmu_sc0003110.1_g000006 Rmu_sc0003226.1_g000028 Rmu_sc0003226.1_g000029 Rmu_sc0003337.1_g000053 Rmu_sc0003558.1_g000007 Rmu_sc0004345.1_g000014 Rmu_sc0004383.1_g000007 Rmu_sc0004888.1_g000021 Rmu_sc0005114.1_g000012 Rmu_sc0005223.1_g000019 Rmu_sc0005223.1_g000020 Rmu_sc0005639.1_g000025 Rmu_sc0005685.1_g000027 Rmu_sc0005992.1_g000002 Rmu_sc0006326.1_g000034 Rmu_sc0006326.1_g000035 Rmu_sc0007390.1_g000012 Rmu_sc0007451.1_g000006 Rmu_sc0007825.1_g000003 Rmu_sc0008600.1_g000023 Rmu_sc0009291.1_g000003 Rmu_sc0012046.1_g000001 Rmu_sc0012046.1_g000002 Rmu_sc0012710.1_g000001 Rmu_sc0015238.1_g000001 Rmu_sc0016125.1_g000003 Rmu_sc0016175.1_g000001 Rmu_sc0016898.1_g000001 Rmu_sc0017323.1_g000010 Rmu_sc0017874.1_g000002 Rmu_sc0019167.1_g000001 Rmu_sc0020815.1_g000006 Rmu_sc0025564.1_g000001 Rmu_sc0026418.1_g000001 Rmu_sc0035188.1_g000002 Rmu_sc0039254.1_g000001 Rmu_ssc0000120.1_g000015 Rmu_ssc0000120.1_g000016 Rmu_ssc0000330.1_g000023 Rmu_ssc0000433.1_g000004
rosa_roxburghii Rroxscaffold_1G00047130 Rroxscaffold_1G00051320 Rroxscaffold_1G00056600 Rroxscaffold_2G00109650 Rroxscaffold_2G00119980 Rroxscaffold_3G00222550 Rroxscaffold_3G00224980 Rroxscaffold_3G00251020 Rroxscaffold_6G00411190 Rroxscaffold_7G00166520 Rroxscaffold_7G00172920 Rroxscaffold_7G00191860 Rroxscaffold_7G00194430
rosa_rugosa Rorug01G0198900 Rorug01G0217300 Rorug01G0244500 Rorug02G0147400 Rorug02G0152200 Rorug02G0595500 Rorug02G0595600 Rorug03G0060500 Rorug03G0203000 Rorug03G0285800 Rorug04G0027200 Rorug04G0027300 Rorug04G0225800 Rorug05G0073400 Rorug05G0213300 Rorug05G0324600 Rorug05G0390900 Rorug05G0391000 Rorug05G0391100 Rorug05G0391200 Rorug05G0462900 Rorug05G0473000 Rorug06G0256500 Rorug07G0199000 Rorug07G0208800 Rorug07G0208800 Rorug07G0316600 Rorug07G0316700
rosa_samantha Rh2BG532400 Rh2CG581900 Rh3CG322600 Rh6AG079900 Rh6AG250800 Rh6AG496300 Rh6BG506100 Rh6CG126000 Rh6CG511700 Rh6DG109400 Rh6DG112700 Rh7CG104500 Rh7CG322000 Rh7CG431500
rosa_wichuraiana Rw0G020410 Rw1G009190 Rw1G014580 Rw1G021000 Rw1G022190 Rw2G025900 Rw2G029920 Rw2G037530 Rw3G018560 Rw3G020560 Rw4G008500 Rw4G022520 Rw5G019030 Rw5G031180 Rw5G044830 Rw6G005010 Rw6G006890 Rw6G011330 Rw6G011380 Rw6G023900 Rw7G028490 Rw7G030170 Rw7G030370 Rw7G032030 Rw7G032040

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 30
Acc36I ACCTGC 1 cut(s) 30
AccIII TCCGGA 1 cut(s) 331
AciI CCGC 1 cut(s) 28
AclWI GGATC 2 cut(s) 160, 173
AcuI CTGAAG 1 cut(s) 228
AfaI GTAC 2 cut(s) 283, 563
AgsI TTSAA 1 cut(s) 175
AlwI GGATC 2 cut(s) 160, 173
Aor13HI TCCGGA 1 cut(s) 331
AoxI GGCC 1 cut(s) 435
ApeKI GCWGC 4 cut(s) 90, 343, 391, 546
AseI ATTAAT 1 cut(s) 414
AspLEI GCGC 1 cut(s) 546
BamHI GGATCC 1 cut(s) 165
BbvI GCAGC 4 cut(s) 102, 355, 403, 533
BccI CCATC 1 cut(s) 131
BfuAI ACCTGC 1 cut(s) 30
BisI GCNGC 4 cut(s) 91, 344, 392, 547
BlsI GCNGC 4 cut(s) 92, 345, 393, 548
BmiI GGNNCC 1 cut(s) 167
BmsI GCATC 1 cut(s) 77
BpuEI CTTGAG 2 cut(s) 582, 605
BsaJI CCNNGG 1 cut(s) 456
BsaWI WCCGGW 1 cut(s) 331
BsaXI ACNNNNNCTCC 4 cut(s) 9, 39, 222, 252
BseAI TCCGGA 1 cut(s) 331
BseDI CCNNGG 1 cut(s) 456
BseRI GAGGAG 1 cut(s) 246
BseXI GCAGC 4 cut(s) 102, 355, 403, 533
Bsh1285I CGRYCG 1 cut(s) 456
BshFI GGCC 1 cut(s) 437
BsiEI CGRYCG 1 cut(s) 456
BsiSI CCGG 1 cut(s) 332
BsnI GGCC 1 cut(s) 437
Bsp13I TCCGGA 1 cut(s) 331
Bsp143I GATC 2 cut(s) 165, 300
BspACI CCGC 1 cut(s) 28
BspANI GGCC 1 cut(s) 437
BspEI TCCGGA 1 cut(s) 331
BspLI GGNNCC 1 cut(s) 167
BspMI ACCTGC 1 cut(s) 30
BspPI GGATC 2 cut(s) 160, 173
BssECI CCNNGG 1 cut(s) 456
BssMI GATC 2 cut(s) 165, 300
Bst4CI ACNGT 1 cut(s) 457
BstC8I GCNNGC 1 cut(s) 542
BstDEI CTNAG 1 cut(s) 314
BstDSI CCRYGG 1 cut(s) 456
BstHHI GCGC 1 cut(s) 546
BstKTI GATC 2 cut(s) 168, 303
BstMBI GATC 2 cut(s) 165, 300
BstMCI CGRYCG 1 cut(s) 456
BstMWI GCNNNNNNNGC 2 cut(s) 90, 546
BstV1I GCAGC 4 cut(s) 102, 355, 403, 533
BstX2I RGATCY 1 cut(s) 165
BstYI RGATCY 1 cut(s) 165
BsuRI GGCC 1 cut(s) 437
BtgI CCRYGG 1 cut(s) 456
BveI ACCTGC 1 cut(s) 30
Cac8I GCNNGC 1 cut(s) 542
CfoI GCGC 1 cut(s) 546
Csp6I GTAC 2 cut(s) 282, 562
CviAII CATG 3 cut(s) 215, 322, 338
CviJI RGCY 5 cut(s) 48, 346, 437, 521, 589
CviKI_1 RGCY 5 cut(s) 48, 346, 437, 521, 589
CviQI GTAC 2 cut(s) 282, 562
DdeI CTNAG 1 cut(s) 314
DpnI GATC 2 cut(s) 167, 302
DpnII GATC 2 cut(s) 165, 300
EciI GGCGGA 1 cut(s) 17
Eco57I CTGAAG 1 cut(s) 228
FaeI CATG 3 cut(s) 218, 325, 341
FaiI YATR 9 cut(s) 190, 216, 323, 339, 367, 369, 425, 427, 429
FatI CATG 3 cut(s) 214, 321, 337
Fnu4HI GCNGC 4 cut(s) 91, 344, 392, 547
Fsp4HI GCNGC 4 cut(s) 91, 344, 392, 547
GlaI GCGC 1 cut(s) 545
GluI GCNGC 4 cut(s) 91, 344, 392, 547
HaeIII GGCC 1 cut(s) 437
HapII CCGG 1 cut(s) 332
HhaI GCGC 1 cut(s) 546
Hin1II CATG 3 cut(s) 218, 325, 341
Hin6I GCGC 1 cut(s) 544
HinP1I GCGC 1 cut(s) 544
HincII GTYRAC 1 cut(s) 241
HindII GTYRAC 1 cut(s) 241
HinfI GANTC 2 cut(s) 56, 445
HpaI GTTAAC 1 cut(s) 241
HpaII CCGG 1 cut(s) 332
Hpy166II GTNNAC 4 cut(s) 241, 284, 421, 564
Hpy188I TCNGA 2 cut(s) 165, 578
Hpy188III TCNNGA 2 cut(s) 332, 599
Hpy8I GTNNAC 4 cut(s) 241, 284, 421, 564
Hpy99I CGWCG 1 cut(s) 67
HpyAV CCTTC 2 cut(s) 221, 600
HpyCH4III ACNGT 1 cut(s) 457
HpyCH4IV ACGT 1 cut(s) 266
HpyCH4V TGCA 2 cut(s) 90, 383
HpyF10VI GCNNNNNNNGC 2 cut(s) 90, 546
HpyF3I CTNAG 1 cut(s) 314
HpySE526I ACGT 1 cut(s) 266
Hsp92II CATG 3 cut(s) 218, 325, 341
HspAI GCGC 1 cut(s) 544
Kpn2I TCCGGA 1 cut(s) 331
KspAI GTTAAC 1 cut(s) 241
Kzo9I GATC 2 cut(s) 165, 300
LmnI GCTCC 1 cut(s) 30
LpnPI CCDG 4 cut(s) 35, 163, 345, 507
Lsp1109I GCAGC 4 cut(s) 102, 355, 403, 533
LweI GCATC 1 cut(s) 77
MaeII ACGT 1 cut(s) 266
MaeIII GTNAC 1 cut(s) 529
MalI GATC 2 cut(s) 167, 302
MboI GATC 2 cut(s) 165, 300
MboII GAAGA 1 cut(s) 221
MflI RGATCY 1 cut(s) 165
MluCI AATT 2 cut(s) 96, 170
MlyI GAGTC 1 cut(s) 65
MmeI TCCRAC 1 cut(s) 447
MnlI CCTC 5 cut(s) 224, 282, 480, 502, 511
MroI TCCGGA 1 cut(s) 331
MseI TTAA 4 cut(s) 240, 306, 414, 551
MslI CAYNNNNRTG 1 cut(s) 249
MspI CCGG 1 cut(s) 332
MwoI GCNNNNNNNGC 2 cut(s) 90, 546
NdeII GATC 2 cut(s) 165, 300
NlaIII CATG 3 cut(s) 218, 325, 341
NlaIV GGNNCC 1 cut(s) 167
PaqCI CACCTGC 1 cut(s) 30
PfeI GAWTC 1 cut(s) 445
PkrI GCNGC 4 cut(s) 92, 345, 393, 548
PleI GAGTC 1 cut(s) 64
PpsI GAGTC 1 cut(s) 64
PshBI ATTAAT 1 cut(s) 414
PspN4I GGNNCC 1 cut(s) 167
PsuI RGATCY 1 cut(s) 165
RsaI GTAC 2 cut(s) 283, 563
RsaNI GTAC 2 cut(s) 282, 562
RseI CAYNNNNRTG 1 cut(s) 249
SaqAI TTAA 4 cut(s) 240, 306, 414, 551
SatI GCNGC 4 cut(s) 91, 344, 392, 547
Sau3AI GATC 2 cut(s) 165, 300
SchI GAGTC 1 cut(s) 65
SetI ASST 6 cut(s) 24, 152, 269, 312, 491, 585
SfaNI GCATC 1 cut(s) 77
SmiMI CAYNNNNRTG 1 cut(s) 249
SmlI CTYRAG 2 cut(s) 584, 597
SmoI CTYRAG 2 cut(s) 584, 597
Sse9I AATT 2 cut(s) 96, 170
SsiI CCGC 1 cut(s) 28
TaaI ACNGT 1 cut(s) 457
TaiI ACGT 1 cut(s) 269
TaqI TCGA 4 cut(s) 54, 135, 296, 452
TasI AATT 2 cut(s) 96, 170
TatI WGTACW 2 cut(s) 281, 561
TfiI GAWTC 1 cut(s) 445
Tru1I TTAA 4 cut(s) 240, 306, 414, 551
Tru9I TTAA 4 cut(s) 240, 306, 414, 551
TseI GCWGC 4 cut(s) 90, 343, 391, 546
TspDTI ATGAA 2 cut(s) 267, 384
VspI ATTAAT 1 cut(s) 414
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.