Rroxscaffold_3G00251020

Protein FAR1-RELATED SEQUENCE 5-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000003
OG0000164
Physical Location & Seq
Forward (+)
44887477 .. 44889756
2280 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_3G00251020.1

Sequence Viewer

Length: 711 bp
ATGTTTTGCCAAACACATTTCACGGTATTGTGTGTGGCATATTCGAAAAAATTTCCAGAGAAGACTAATGTAGCTTTTATGCAAGATTACTATGAACTTTTCAAGACATGTATATGGGATTCGGAGTGTCCAGAAGAATTTGAAAAGAGATGGTTTGAAGCATTGGAAAAAAGTCAACAGACAAATAATGAATGGTTAGAAAAAATGTTTGAATTGCGTGGCAAGTGGATTCCAGCATACGTAAATAAAAACTTTTCAGCAGGGATGTCAAGCAGCCAAAGAGTAGAATCTGCACATGCATTCTTCAAGCGTTATTGTGATAAAGAAAACACCTTGATGGATTTTGTCACGCGTTTCAATAGGGCGGTCGCTCATCAAAGACATGAAGAATTGATTGAAGACCATAGAGATTTGAATGAGACACCTAACTTGAAATTAGGGATGCCAATGGAGGTCCAAATGGCTCAATTATATACCAAAAAGTACTTTCAGCACTTTCAAGCTCAGCTTCATGATGGTAATGGTTATATCGTAAATGCCGTAATGGAAGATGACAGTAGTTGTGTTTACAAGACCGAAAGGGTGTTTGCTGAAAACTTTAGGATGCGGACGCTTGTACATGATAAGGTATCAAATATAGTGACATGTAGTTGTAAAATGTTTGAATTTGAAGGTATTCCTTGCAGGCATATTTTGGCTCGTTACGACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
FAR1 MULE SWIM

Protein Analysis

236

Amino Acids

28.18

Weight (kDa)

6.16

Isoelectric Point (pI)

41.08

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SWIM PF04434 212 - 233 1.1e-08 SWIM zinc finger
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000164)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g02320 FvH4_1g21472 FvH4_2g00813 FvH4_2g02512 FvH4_2g03921 FvH4_2g23460 FvH4_3g29141 FvH4_4g05791 FvH4_4g06321 FvH4_4g15595 FvH4_4g18162 FvH4_4g18163 FvH4_4g29541 FvH4_4g29541 FvH4_4g29541 FvH4_4g29541 FvH4_4g29541 FvH4_5g31093 FvH4_6g01982 FvH4_6g21931 FvH4_6g44691 FvH4_6g48541
prunus_persica Prupe.1G074100_v2.0.a1 Prupe.3G021400_v2.0.a1
pyrus_communis pycom02g18570 pycom14g00670
rosa_chinensis RchiOBHm_Chr1g0379201 RchiOBHm_Chr1g0379361 RchiOBHm_Chr4g0405981 RchiOBHm_Chr5g0073641 RchiOBHm_Chr5g0073651 RchiOBHm_Chr7g0236661
rosa_multiflora Rmu_co8179562.1_g000001 Rmu_co8343647.1_g000001 Rmu_sc0000041.1_g000017 Rmu_sc0000114.1_g000020 Rmu_sc0000286.1_g000006 Rmu_sc0000308.1_g000038 Rmu_sc0000365.1_g000061 Rmu_sc0000365.1_g000062 Rmu_sc0000538.1_g000060 Rmu_sc0000538.1_g000061 Rmu_sc0000586.1_g000016 Rmu_sc0000898.1_g000007 Rmu_sc0000913.1_g000003 Rmu_sc0000913.1_g000004 Rmu_sc0000996.1_g000006 Rmu_sc0000996.1_g000007 Rmu_sc0000998.1_g000003 Rmu_sc0001350.1_g000009 Rmu_sc0002079.1_g000009 Rmu_sc0002200.1_g000013 Rmu_sc0002226.1_g000025 Rmu_sc0002279.1_g000014 Rmu_sc0002478.1_g000014 Rmu_sc0002717.1_g000004 Rmu_sc0002868.1_g000027 Rmu_sc0002889.1_g000043 Rmu_sc0003023.1_g000001 Rmu_sc0003110.1_g000006 Rmu_sc0003226.1_g000028 Rmu_sc0003226.1_g000029 Rmu_sc0003337.1_g000053 Rmu_sc0003558.1_g000007 Rmu_sc0004345.1_g000014 Rmu_sc0004383.1_g000007 Rmu_sc0004888.1_g000021 Rmu_sc0005114.1_g000012 Rmu_sc0005223.1_g000019 Rmu_sc0005223.1_g000020 Rmu_sc0005639.1_g000025 Rmu_sc0005685.1_g000027 Rmu_sc0005992.1_g000002 Rmu_sc0006326.1_g000034 Rmu_sc0006326.1_g000035 Rmu_sc0007390.1_g000012 Rmu_sc0007451.1_g000006 Rmu_sc0007825.1_g000003 Rmu_sc0008600.1_g000023 Rmu_sc0009291.1_g000003 Rmu_sc0012046.1_g000001 Rmu_sc0012046.1_g000002 Rmu_sc0012710.1_g000001 Rmu_sc0015238.1_g000001 Rmu_sc0016125.1_g000003 Rmu_sc0016175.1_g000001 Rmu_sc0016898.1_g000001 Rmu_sc0017323.1_g000010 Rmu_sc0017874.1_g000002 Rmu_sc0019167.1_g000001 Rmu_sc0020815.1_g000006 Rmu_sc0025564.1_g000001 Rmu_sc0026418.1_g000001 Rmu_sc0035188.1_g000002 Rmu_sc0039254.1_g000001 Rmu_ssc0000120.1_g000015 Rmu_ssc0000120.1_g000016 Rmu_ssc0000330.1_g000023 Rmu_ssc0000433.1_g000004
rosa_roxburghii Rroxscaffold_1G00047130 Rroxscaffold_1G00051320 Rroxscaffold_1G00056600 Rroxscaffold_2G00109650 Rroxscaffold_2G00119980 Rroxscaffold_3G00222550 Rroxscaffold_3G00224980 Rroxscaffold_3G00251020 Rroxscaffold_6G00411190 Rroxscaffold_7G00166520 Rroxscaffold_7G00172920 Rroxscaffold_7G00191860 Rroxscaffold_7G00194430
rosa_rugosa Rorug01G0198900 Rorug01G0217300 Rorug01G0244500 Rorug02G0147400 Rorug02G0152200 Rorug02G0595500 Rorug02G0595600 Rorug03G0060500 Rorug03G0203000 Rorug03G0285800 Rorug04G0027200 Rorug04G0027300 Rorug04G0225800 Rorug05G0073400 Rorug05G0213300 Rorug05G0324600 Rorug05G0390900 Rorug05G0391000 Rorug05G0391100 Rorug05G0391200 Rorug05G0462900 Rorug05G0473000 Rorug06G0256500 Rorug07G0199000 Rorug07G0208800 Rorug07G0208800 Rorug07G0316600 Rorug07G0316700
rosa_samantha Rh2BG532400 Rh2CG581900 Rh3CG322600 Rh6AG079900 Rh6AG250800 Rh6AG496300 Rh6BG506100 Rh6CG126000 Rh6CG511700 Rh6DG109400 Rh6DG112700 Rh7CG104500 Rh7CG322000 Rh7CG431500
rosa_wichuraiana Rw0G020410 Rw1G009190 Rw1G014580 Rw1G021000 Rw1G022190 Rw2G025900 Rw2G029920 Rw2G037530 Rw3G018560 Rw3G020560 Rw4G008500 Rw4G022520 Rw5G019030 Rw5G031180 Rw5G044830 Rw6G005010 Rw6G006890 Rw6G011330 Rw6G011380 Rw6G023900 Rw7G028490 Rw7G030170 Rw7G030370 Rw7G032030 Rw7G032040

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 352
AciI CCGC 2 cut(s) 365, 607
AcsI RAATTY 3 cut(s) 50, 137, 665
AfaI GTAC 2 cut(s) 485, 618
AflIII ACRYGT 3 cut(s) 107, 350, 644
AluBI AGCT 3 cut(s) 74, 503, 508
AluI AGCT 3 cut(s) 74, 503, 508
Alw26I GTCTC 1 cut(s) 413
ApeKI GCWGC 1 cut(s) 273
ApoI RAATTY 3 cut(s) 50, 137, 665
Asp700I GAANNNNTTC 1 cut(s) 675
AspS9I GGNCC 1 cut(s) 454
AsuII TTCGAA 1 cut(s) 44
AvaII GGWCC 1 cut(s) 454
BbsI GAAGAC 2 cut(s) 68, 405
BbvI GCAGC 1 cut(s) 285
BccI CCATC 3 cut(s) 144, 331, 509
BceAI ACGGC 1 cut(s) 524
BcoDI GTCTC 1 cut(s) 413
BisI GCNGC 1 cut(s) 274
BlpI GCTNAGC 1 cut(s) 504
BlsI GCNGC 1 cut(s) 275
BmcAI AGTACT 1 cut(s) 485
Bme18I GGWCC 1 cut(s) 454
BmgT120I GGNCC 1 cut(s) 454
BmsI GCATC 2 cut(s) 432, 594
BpiI GAAGAC 2 cut(s) 68, 405
Bpu1102I GCTNAGC 1 cut(s) 504
Bpu14I TTCGAA 1 cut(s) 44
BsaAI YACGTR 1 cut(s) 241
BseGI GGATG 3 cut(s) 270, 447, 609
BseMII CTCAG 1 cut(s) 518
BseXI GCAGC 1 cut(s) 285
BsgI GTGCAG 1 cut(s) 276
Bsh1236I CGCG 1 cut(s) 352
Bsh1285I CGRYCG 1 cut(s) 369
BsiEI CGRYCG 1 cut(s) 369
BsmAI GTCTC 1 cut(s) 413
BsmI GAATGC 1 cut(s) 299
Bsp119I TTCGAA 1 cut(s) 44
Bsp1407I TGTACA 1 cut(s) 616
Bsp1720I GCTNAGC 1 cut(s) 504
BspACI CCGC 2 cut(s) 365, 607
BspCNI CTCAG 1 cut(s) 517
BspFNI CGCG 1 cut(s) 352
BspHI TCATGA 1 cut(s) 511
BspT104I TTCGAA 1 cut(s) 44
BsrGI TGTACA 1 cut(s) 616
Bst4CI ACNGT 2 cut(s) 25, 557
BstAUI TGTACA 1 cut(s) 616
BstBAI YACGTR 1 cut(s) 241
BstBI TTCGAA 1 cut(s) 44
BstC8I GCNNGC 1 cut(s) 686
BstDEI CTNAG 1 cut(s) 504
BstF5I GGATG 3 cut(s) 270, 447, 609
BstFNI CGCG 1 cut(s) 352
BstMAI GTCTC 1 cut(s) 413
BstMCI CGRYCG 1 cut(s) 369
BstNSI RCATGY 3 cut(s) 111, 299, 648
BstSNI TACGTA 1 cut(s) 241
BstUI CGCG 1 cut(s) 352
BstV1I GCAGC 1 cut(s) 285
BstV2I GAAGAC 2 cut(s) 68, 405
BtsCI GGATG 3 cut(s) 270, 447, 609
Cac8I GCNNGC 1 cut(s) 686
CciI TCATGA 1 cut(s) 511
Cfr13I GGNCC 1 cut(s) 454
CseI GACGC 1 cut(s) 619
Csp6I GTAC 2 cut(s) 484, 617
CviAII CATG 6 cut(s) 108, 296, 383, 512, 620, 645
CviJI RGCY 6 cut(s) 74, 276, 464, 503, 508, 698
CviKI_1 RGCY 6 cut(s) 74, 276, 464, 503, 508, 698
CviQI GTAC 2 cut(s) 484, 617
DdeI CTNAG 1 cut(s) 504
Eco105I TACGTA 1 cut(s) 241
Eco47I GGWCC 1 cut(s) 454
EcoT22I ATGCAT 1 cut(s) 301
FaeI CATG 6 cut(s) 111, 299, 386, 515, 623, 648
FalI AAGNNNNNCTT 2 cut(s) 492, 524
FatI CATG 6 cut(s) 107, 295, 382, 511, 619, 644
Fnu4HI GCNGC 1 cut(s) 274
FokI GGATG 3 cut(s) 277, 454, 616
Fsp4HI GCNGC 1 cut(s) 274
GluI GCNGC 1 cut(s) 274
HgaI GACGC 1 cut(s) 619
Hin1II CATG 6 cut(s) 111, 299, 386, 515, 623, 648
HincII GTYRAC 1 cut(s) 176
HindII GTYRAC 1 cut(s) 176
HinfI GANTC 3 cut(s) 119, 229, 287
Hpy166II GTNNAC 2 cut(s) 176, 568
Hpy188I TCNGA 1 cut(s) 124
Hpy188III TCNNGA 4 cut(s) 56, 103, 131, 512
Hpy8I GTNNAC 2 cut(s) 176, 568
HpyAV CCTTC 1 cut(s) 665
HpyCH4III ACNGT 2 cut(s) 25, 557
HpyCH4IV ACGT 1 cut(s) 240
HpyCH4V TGCA 4 cut(s) 82, 293, 299, 684
HpyF3I CTNAG 1 cut(s) 504
HpySE526I ACGT 1 cut(s) 240
Hsp92II CATG 6 cut(s) 111, 299, 386, 515, 623, 648
LpnPI CCDG 5 cut(s) 69, 144, 246, 246, 670
Lsp1109I GCAGC 1 cut(s) 285
LweI GCATC 2 cut(s) 432, 594
MaeII ACGT 1 cut(s) 240
MaeIII GTNAC 3 cut(s) 346, 640, 701
MboII GAAGA 6 cut(s) 73, 146, 295, 398, 410, 560
MluCI AATT 7 cut(s) 50, 137, 212, 389, 434, 467, 665
MluI ACGCGT 1 cut(s) 350
MnlI CCTC 1 cut(s) 445
Mph1103I ATGCAT 1 cut(s) 301
MroXI GAANNNNTTC 1 cut(s) 675
MslI CAYNNNNRTG 2 cut(s) 112, 335
Mva1269I GAATGC 1 cut(s) 299
MvnI CGCG 1 cut(s) 352
NlaIII CATG 6 cut(s) 111, 299, 386, 515, 623, 648
NmuCI GTSAC 2 cut(s) 346, 640
NsiI ATGCAT 1 cut(s) 301
NspI RCATGY 3 cut(s) 111, 299, 648
NspV TTCGAA 1 cut(s) 44
PagI TCATGA 1 cut(s) 511
PciI ACATGT 2 cut(s) 107, 644
PcsI WCGNNNNNNNCGW 1 cut(s) 537
PctI GAATGC 1 cut(s) 299
PdmI GAANNNNTTC 1 cut(s) 675
PfeI GAWTC 3 cut(s) 119, 229, 287
PkrI GCNGC 1 cut(s) 275
Ppu21I YACGTR 1 cut(s) 241
PscI ACATGT 2 cut(s) 107, 644
PspPI GGNCC 1 cut(s) 454
RsaI GTAC 2 cut(s) 485, 618
RsaNI GTAC 2 cut(s) 484, 617
RseI CAYNNNNRTG 2 cut(s) 112, 335
SatI GCNGC 1 cut(s) 274
Sau96I GGNCC 1 cut(s) 454
ScaI AGTACT 1 cut(s) 485
SetI ASST 9 cut(s) 76, 243, 335, 427, 456, 505, 510, 630, 676
SfaNI GCATC 2 cut(s) 432, 594
SfuI TTCGAA 1 cut(s) 44
SinI GGWCC 1 cut(s) 454
SmiMI CAYNNNNRTG 2 cut(s) 112, 335
SnaBI TACGTA 1 cut(s) 241
Sse9I AATT 7 cut(s) 50, 137, 212, 389, 434, 467, 665
SsiI CCGC 2 cut(s) 365, 607
TaaI ACNGT 2 cut(s) 25, 557
TaiI ACGT 1 cut(s) 243
TaqI TCGA 1 cut(s) 44
TaqII GACCGA 1 cut(s) 590
TasI AATT 7 cut(s) 50, 137, 212, 389, 434, 467, 665
TatI WGTACW 2 cut(s) 483, 616
TfiI GAWTC 3 cut(s) 119, 229, 287
TseFI GTSAC 2 cut(s) 346, 640
TseI GCWGC 1 cut(s) 273
Tsp45I GTSAC 2 cut(s) 346, 640
TspDTI ATGAA 4 cut(s) 108, 204, 399, 500
VpaK11BI GGWCC 1 cut(s) 454
XapI RAATTY 3 cut(s) 50, 137, 665
XceI RCATGY 3 cut(s) 111, 299, 648
XmnI GAANNNNTTC 1 cut(s) 675
ZrmI AGTACT 1 cut(s) 485
Zsp2I ATGCAT 1 cut(s) 301
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.