FvH4_3g36421

Plant transposon protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0000468
Physical Location & Seq
Forward (+)
31232450 .. 31233218
769 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g36421.t1

Sequence Viewer

Length: 690 bp
ATGGAAGCACTTGATGGAACTCACATTCCAGTGACTGTGTCAGCTGAAGAAAGACTGAGATACCGCAATAGAAAGGGTGATATTTCTACTAACGTCTTGGGAGTTTGTGTCCCTGATTTAAAATTTATATATGTATTGCCTGGATGGGAATGTTCTGCTTCTGATGCTCGTGTTTTACGAGATGCTCTACGTAGAAATAATCGGCTTCATGCTCCAAGAGATAAATACTTTTTGGTGGATGTGGGATATACTAATGGACCTGGTTTTTTAGCTCCATATCGAGGAACTAGATATCATCATTTAAACGAATGGACAGAGAATAGACCTCGAAATGCCAAAGAGTTGTATAATCTTCGCTATTCAGTTGCAAGGAATGTAATTGAACGGTCATTTGGGTTGTTAAAAAAGCGTTGGAGTATAATGCGTACTCCATCCTTTTTCGACATCAAAACACAAGTTAGGATTATTAATGCTTGTTGTGTTTTGCATAATTATATCCAAATTGAGCAAGCTAGTGATCCTGTTCTTGAAGATCAAGATTCAAGGTTTTTAGCAGATGTTGATCAAGAGATATTAAACCGTGCAACGTCAAAGGGTCCTTCAAATGATCGGATTACATGCGTTCAACCTACTGAGCAGTGGACAAATTTTCGTGATGCATTTGCATTGAAGATGTTCCAAGATTATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DDE_Tnp_4

Protein Analysis

230

Amino Acids

26.66

Weight (kDa)

8.96

Isoelectric Point (pI)

39.41

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DDE_Tnp_1 PF01609 3 - 162 6.2e-08 Transposase DDE domain
DDE_Tnp_4 PF13359 4 - 164 8.4e-24 DDE superfamily endonuclease
Plant_tran PF04827 71 - 169 2.5e-07 Plant transposon protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000468)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g04030 FvH4_2g09411 FvH4_3g15551 FvH4_3g36421 FvH4_4g11701 FvH4_5g36381 FvH4_6g09143 FvH4_6g09144 FvH4_6g21972
malus_domestica MD00G1096500.v1.1 MD00G1122500.v1.1 MD02G1090600.v1.1 MD02G1173300.v1.1 MD05G1202800.v1.1 MD14G1123600.v1.1
prunus_persica Prupe.1G083600_v2.0.a1 Prupe.1G245300_v2.0.a1 Prupe.5G002100_v2.0.a1 Prupe.6G061200_v2.0.a1
pyrus_communis pycom01g07060 pycom02g13920 pycom04g11780 pycom04g13480 pycom04g21940 pycom06g07950 pycom07g03740 pycom07g03980 pycom09g02010 pycom09g02020 pycom09g11510 pycom09g14260 pycom10g02500 pycom10g15690 pycom12g08730 pycom12g08740 pycom14g19840 pycom15g16780 pycom15g24940 pycom15g25660 pycom16g21630 pycom16g26320
rosa_chinensis RchiOBHm_Chr1g0330371 RchiOBHm_Chr1g0331991 RchiOBHm_Chr6g0300321
rosa_laevigata RLG00000013795
rosa_multiflora Rmu_sc0000060.1_g000010 Rmu_sc0000288.1_g000044 Rmu_sc0002219.1_g000002 Rmu_sc0003995.1_g000003
rosa_roxburghii Rroxscaffold_1G00059020 Rroxscaffold_2G00108450 Rroxscaffold_2G00112460 Rroxscaffold_5G00375700 Rroxscaffold_5G00381640 Rroxscaffold_7G00158590
rosa_rugosa Rorug01G0237300 Rorug01G0237400 Rorug01G0237500 Rorug02G0051900 Rorug03G0260600 Rorug03G0285800 Rorug04G0076800 Rorug04G0162600 Rorug07G0264500 Rorug07G0264500
rosa_samantha Rh2DG003500 Rh3CG244800 Rh4CG334200 Rh5AG318300 Rh5BG549000 Rh7AG126400 Rh7CG118500 Rh7CG154500 Rh7DG025400
rosa_wichuraiana Rw1G026390 Rw2G005400 Rw2G034490 Rw3G019530 Rw3G028000 Rw4G010490 Rw5G010830 Rw5G023340 Rw5G026580 Rw5G041150 Rw6G003010 Rw6G003290 Rw6G010630 Rw6G021220 Rw6G035650 Rw7G014310

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 64
AclWI GGATC 1 cut(s) 512
AcsI RAATTY 2 cut(s) 122, 646
AcuI CTGAAG 1 cut(s) 66
AfaI GTAC 1 cut(s) 427
AfiI CCNNNNNNNGG 1 cut(s) 281
AgsI TTSAA 6 cut(s) 383, 530, 543, 603, 626, 670
AjnI CCWGG 2 cut(s) 139, 259
AjuI GAANNNNNNNTTGG 2 cut(s) 375, 407
AloI GAACNNNNNNTCC 2 cut(s) 10, 42
AluBI AGCT 3 cut(s) 44, 272, 512
AluI AGCT 3 cut(s) 44, 272, 512
AlwI GGATC 1 cut(s) 512
AlwNI CAGNNNCTG 1 cut(s) 35
ApoI RAATTY 2 cut(s) 122, 646
AseI ATTAAT 1 cut(s) 468
Asp700I GAANNNNTTC 1 cut(s) 674
AspS9I GGNCC 2 cut(s) 257, 596
AsuHPI GGTGA 1 cut(s) 89
AvaII GGWCC 2 cut(s) 257, 596
BauI CACGAG 1 cut(s) 168
BccI CCATC 3 cut(s) 8, 138, 439
BciT130I CCWGG 2 cut(s) 141, 261
BclI TGATCA 1 cut(s) 562
BfaI CTAG 2 cut(s) 288, 513
Bme1390I CCNGG 2 cut(s) 141, 261
Bme18I GGWCC 2 cut(s) 257, 596
BmgT120I GGNCC 2 cut(s) 257, 596
BmiI GGNNCC 1 cut(s) 597
BmrFI CCNGG 2 cut(s) 141, 261
BmsI GCATC 3 cut(s) 154, 172, 646
BsaAI YACGTR 1 cut(s) 191
BsaBI GATNNNNATC 1 cut(s) 561
BsaXI ACNNNNNCTCC 2 cut(s) 93, 123
Bsc4I CCNNNNNNNGG 1 cut(s) 281
Bse1I ACTGG 1 cut(s) 29
Bse8I GATNNNNATC 1 cut(s) 561
BseBI CCWGG 2 cut(s) 141, 261
BseGI GGATG 3 cut(s) 149, 244, 431
BseJI GATNNNNATC 1 cut(s) 561
BseLI CCNNNNNNNGG 1 cut(s) 281
BseMII CTCAG 2 cut(s) 47, 624
BseNI ACTGG 1 cut(s) 29
BslFI GGGAC 1 cut(s) 95
BslI CCNNNNNNNGG 1 cut(s) 281
BsmFI GGGAC 1 cut(s) 95
Bsp143I GATC 4 cut(s) 517, 532, 562, 607
BspACI CCGC 1 cut(s) 64
BspCNI CTCAG 2 cut(s) 48, 625
BspLI GGNNCC 1 cut(s) 597
BspPI GGATC 1 cut(s) 512
BsrI ACTGG 1 cut(s) 29
BssMI GATC 4 cut(s) 517, 532, 562, 607
BssSI CACGAG 1 cut(s) 168
Bst2BI CACGAG 1 cut(s) 168
Bst2UI CCWGG 2 cut(s) 141, 261
Bst4CI ACNGT 3 cut(s) 37, 387, 581
BstBAI YACGTR 1 cut(s) 191
BstC8I GCNNGC 1 cut(s) 510
BstDEI CTNAG 2 cut(s) 56, 633
BstF5I GGATG 3 cut(s) 149, 244, 431
BstKTI GATC 4 cut(s) 520, 535, 565, 610
BstMBI GATC 4 cut(s) 517, 532, 562, 607
BstMWI GCNNNNNNNGC 1 cut(s) 164
BstNI CCWGG 2 cut(s) 141, 261
BstNSI RCATGY 1 cut(s) 621
BstSCI CCNGG 2 cut(s) 139, 259
BstSNI TACGTA 1 cut(s) 191
BtsCI GGATG 3 cut(s) 149, 244, 431
BtsI GCAGTG 1 cut(s) 644
BtsIMutI CAGTG 2 cut(s) 36, 644
Cac8I GCNNGC 1 cut(s) 510
CaiI CAGNNNCTG 1 cut(s) 35
Cfr13I GGNCC 2 cut(s) 257, 596
CsiI ACCWGGT 1 cut(s) 259
Csp6I GTAC 1 cut(s) 426
CviAII CATG 2 cut(s) 209, 618
CviJI RGCY 4 cut(s) 44, 205, 272, 512
CviKI_1 RGCY 4 cut(s) 44, 205, 272, 512
CviQI GTAC 1 cut(s) 426
DdeI CTNAG 2 cut(s) 56, 633
DpnI GATC 4 cut(s) 519, 534, 564, 609
DpnII GATC 4 cut(s) 517, 532, 562, 607
DraI TTTAAA 2 cut(s) 120, 303
Eco105I TACGTA 1 cut(s) 191
Eco32I GATATC 1 cut(s) 293
Eco47I GGWCC 2 cut(s) 257, 596
Eco57I CTGAAG 1 cut(s) 66
EcoO109I RGGNCCY 1 cut(s) 596
EcoRII CCWGG 2 cut(s) 139, 259
EcoRV GATATC 1 cut(s) 293
EcoT22I ATGCAT 1 cut(s) 661
FaeI CATG 2 cut(s) 212, 621
FaqI GGGAC 1 cut(s) 95
FatI CATG 2 cut(s) 208, 617
FbaI TGATCA 1 cut(s) 562
FokI GGATG 3 cut(s) 156, 251, 418
FspBI CTAG 2 cut(s) 288, 513
Hin1II CATG 2 cut(s) 212, 621
HinfI GANTC 1 cut(s) 539
HphI GGTGA 1 cut(s) 89
Hpy166II GTNNAC 1 cut(s) 642
Hpy188I TCNGA 2 cut(s) 163, 612
Hpy188III TCNNGA 4 cut(s) 527, 536, 566, 653
Hpy8I GTNNAC 1 cut(s) 642
HpyAV CCTTC 1 cut(s) 609
HpyCH4III ACNGT 3 cut(s) 37, 387, 581
HpyCH4IV ACGT 3 cut(s) 93, 190, 587
HpyCH4V TGCA 5 cut(s) 368, 487, 584, 659, 665
HpyF10VI GCNNNNNNNGC 1 cut(s) 164
HpyF3I CTNAG 2 cut(s) 56, 633
HpySE526I ACGT 3 cut(s) 93, 190, 587
Hsp92II CATG 2 cut(s) 212, 621
Ksp22I TGATCA 1 cut(s) 562
Kzo9I GATC 4 cut(s) 517, 532, 562, 607
LmnI GCTCC 2 cut(s) 217, 277
LpnPI CCDG 7 cut(s) 42, 126, 126, 153, 246, 273, 534
LweI GCATC 3 cut(s) 154, 172, 646
MabI ACCWGGT 1 cut(s) 259
MaeI CTAG 2 cut(s) 288, 513
MaeII ACGT 3 cut(s) 93, 190, 587
MaeIII GTNAC 1 cut(s) 31
MalI GATC 4 cut(s) 519, 534, 564, 609
MboI GATC 4 cut(s) 517, 532, 562, 607
MboII GAAGA 4 cut(s) 59, 344, 542, 682
MluCI AATT 5 cut(s) 122, 378, 490, 501, 646
MmeI TCCRAC 1 cut(s) 392
MnlI CCTC 2 cut(s) 275, 336
Mph1103I ATGCAT 1 cut(s) 661
MroXI GAANNNNTTC 1 cut(s) 674
MseI TTAA 6 cut(s) 119, 302, 401, 468, 575, 688
MslI CAYNNNNRTG 1 cut(s) 29
MspA1I CMGCKG 1 cut(s) 44
MspR9I CCNGG 2 cut(s) 141, 261
MvaI CCWGG 2 cut(s) 141, 261
MwoI GCNNNNNNNGC 1 cut(s) 164
NdeII GATC 4 cut(s) 517, 532, 562, 607
NlaIII CATG 2 cut(s) 212, 621
NlaIV GGNNCC 1 cut(s) 597
NmuCI GTSAC 1 cut(s) 31
NsiI ATGCAT 1 cut(s) 661
NspI RCATGY 1 cut(s) 621
PcsI WCGNNNNNNNCGW 1 cut(s) 175
PdmI GAANNNNTTC 1 cut(s) 674
PfeI GAWTC 1 cut(s) 539
PflFI GACNNNGTC 1 cut(s) 37
Ppu21I YACGTR 1 cut(s) 191
PpuMI RGGWCCY 1 cut(s) 596
PshBI ATTAAT 1 cut(s) 468
Psp5II RGGWCCY 1 cut(s) 596
Psp6I CCWGG 2 cut(s) 139, 259
PspGI CCWGG 2 cut(s) 139, 259
PspN4I GGNNCC 1 cut(s) 597
PspPI GGNCC 2 cut(s) 257, 596
PspPPI RGGWCCY 1 cut(s) 596
PstNI CAGNNNCTG 1 cut(s) 35
PsyI GACNNNGTC 1 cut(s) 37
PvuII CAGCTG 1 cut(s) 44
RsaI GTAC 1 cut(s) 427
RsaNI GTAC 1 cut(s) 426
RseI CAYNNNNRTG 1 cut(s) 29
SaqAI TTAA 6 cut(s) 119, 302, 401, 468, 575, 688
Sau3AI GATC 4 cut(s) 517, 532, 562, 607
Sau96I GGNCC 2 cut(s) 257, 596
ScrFI CCNGG 2 cut(s) 141, 261
SexAI ACCWGGT 1 cut(s) 259
SfaNI GCATC 3 cut(s) 154, 172, 646
SinI GGWCC 2 cut(s) 257, 596
SmiMI CAYNNNNRTG 1 cut(s) 29
SnaBI TACGTA 1 cut(s) 191
Sse9I AATT 5 cut(s) 122, 378, 490, 501, 646
SsiI CCGC 1 cut(s) 64
SspMI CTAG 2 cut(s) 288, 513
StyD4I CCNGG 2 cut(s) 139, 259
TaaI ACNGT 3 cut(s) 37, 387, 581
TaiI ACGT 3 cut(s) 96, 193, 590
TaqI TCGA 3 cut(s) 280, 328, 441
TasI AATT 5 cut(s) 122, 378, 490, 501, 646
TfiI GAWTC 1 cut(s) 539
Tru1I TTAA 6 cut(s) 119, 302, 401, 468, 575, 688
Tru9I TTAA 6 cut(s) 119, 302, 401, 468, 575, 688
TscAI CASTG 2 cut(s) 36, 644
TseFI GTSAC 1 cut(s) 31
Tsp45I GTSAC 1 cut(s) 31
TspDTI ATGAA 1 cut(s) 197
TspRI CASTG 2 cut(s) 36, 644
Tth111I GACNNNGTC 1 cut(s) 37
VpaK11BI GGWCC 2 cut(s) 257, 596
VspI ATTAAT 1 cut(s) 468
XapI RAATTY 2 cut(s) 122, 646
XceI RCATGY 1 cut(s) 621
XmnI GAANNNNTTC 1 cut(s) 674
XspI CTAG 2 cut(s) 288, 513
Zsp2I ATGCAT 1 cut(s) 661
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.