Rh7CG154500
MYB Family

nuclease HARBI1

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7C
OG0000468
Physical Location & Seq
Reverse (-)
12702066 .. 12703546
1481 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7CG154500.1

Sequence Viewer

Length: 450 bp
ATGGCTCGTAGAAAGTTGTCGAAGACAAAAAAGATTCTTCTAATGCTGGACAATATTAAGGATTTGCTTAACTTTGTCGTGATGATATACATTATGATGTATATCATTGCAGAAAGACATTATCGGAAGTATAGATTGAAATCACCATCTTTTTATGATGCTTTGTCAAGAATTGGAAATGTTCAACGAATGGTGTATGCAAGCGATGTAAGATACATAAACAGTCTCCGTATGGATAGGCATACATTTAGCTTATTGTGCTCTATGTTACGCACATCTGGTAAATTAAGAGACACAAGAAATGTATCTGTAGATGAAATGGTAGCTATGTTCTTGCATATTCTTGCGCACCATGAAAAGAACAGAATCATACAAGATAGATTTTTGCGTTCTGGGGAACCAATTAGCAGATATTTTAACGCGGTATTAAGAGCAGTCCTATGTCTATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DDE_Tnp_4 Myb_DNA-bind_3

Protein Analysis

149

Amino Acids

17.75

Weight (kDa)

10.34

Isoelectric Point (pI)

43.76

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF8040 PF26138 60 - 147 8.9e-28 Domain of unknown function (DUF8040)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000468)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g04030 FvH4_2g09411 FvH4_3g15551 FvH4_3g36421 FvH4_4g11701 FvH4_5g36381 FvH4_6g09143 FvH4_6g09144 FvH4_6g21972
malus_domestica MD00G1096500.v1.1 MD00G1122500.v1.1 MD02G1090600.v1.1 MD02G1173300.v1.1 MD05G1202800.v1.1 MD14G1123600.v1.1
prunus_persica Prupe.1G083600_v2.0.a1 Prupe.1G245300_v2.0.a1 Prupe.5G002100_v2.0.a1 Prupe.6G061200_v2.0.a1
pyrus_communis pycom01g07060 pycom02g13920 pycom04g11780 pycom04g13480 pycom04g21940 pycom06g07950 pycom07g03740 pycom07g03980 pycom09g02010 pycom09g02020 pycom09g11510 pycom09g14260 pycom10g02500 pycom10g15690 pycom12g08730 pycom12g08740 pycom14g19840 pycom15g16780 pycom15g24940 pycom15g25660 pycom16g21630 pycom16g26320
rosa_chinensis RchiOBHm_Chr1g0330371 RchiOBHm_Chr1g0331991 RchiOBHm_Chr6g0300321
rosa_laevigata RLG00000013795
rosa_multiflora Rmu_sc0000060.1_g000010 Rmu_sc0000288.1_g000044 Rmu_sc0002219.1_g000002 Rmu_sc0003995.1_g000003
rosa_roxburghii Rroxscaffold_1G00059020 Rroxscaffold_2G00108450 Rroxscaffold_2G00112460 Rroxscaffold_5G00375700 Rroxscaffold_5G00381640 Rroxscaffold_7G00158590
rosa_rugosa Rorug01G0237300 Rorug01G0237400 Rorug01G0237500 Rorug02G0051900 Rorug03G0260600 Rorug03G0285800 Rorug04G0076800 Rorug04G0162600 Rorug07G0264500 Rorug07G0264500
rosa_samantha Rh2DG003500 Rh3CG244800 Rh4CG334200 Rh5AG318300 Rh5BG549000 Rh7AG126400 Rh7CG118500 Rh7CG154500 Rh7DG025400
rosa_wichuraiana Rw1G026390 Rw2G005400 Rw2G034490 Rw3G019530 Rw3G028000 Rw4G010490 Rw5G010830 Rw5G023340 Rw5G026580 Rw5G041150 Rw6G003010 Rw6G003290 Rw6G010630 Rw6G021220 Rw6G035650 Rw7G014310

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 348
AccII CGCG 1 cut(s) 422
AciI CCGC 1 cut(s) 422
AgsI TTSAA 2 cut(s) 139, 185
AluBI AGCT 2 cut(s) 252, 326
AluI AGCT 2 cut(s) 252, 326
Alw21I GWGCWC 1 cut(s) 263
Alw26I GTCTC 2 cut(s) 230, 285
AspLEI GCGC 1 cut(s) 349
AsuHPI GGTGA 1 cut(s) 135
BbsI GAAGAC 1 cut(s) 29
Bbv12I GWGCWC 1 cut(s) 263
BccI CCATC 1 cut(s) 154
BcoDI GTCTC 2 cut(s) 230, 285
BfmI CTRYAG 1 cut(s) 309
BmiI GGNNCC 1 cut(s) 399
BmsI GCATC 1 cut(s) 148
BpiI GAAGAC 1 cut(s) 29
BsaBI GATNNNNATC 2 cut(s) 101, 139
Bse3DI GCAATG 1 cut(s) 105
Bse8I GATNNNNATC 2 cut(s) 101, 139
BseJI GATNNNNATC 2 cut(s) 101, 139
BseMI GCAATG 1 cut(s) 105
Bsh1236I CGCG 1 cut(s) 422
BsiHKAI GWGCWC 1 cut(s) 263
BsmAI GTCTC 2 cut(s) 230, 285
Bsp1286I GDGCHC 1 cut(s) 263
BspACI CCGC 1 cut(s) 422
BspFNI CGCG 1 cut(s) 422
BspLI GGNNCC 1 cut(s) 399
BsrDI GCAATG 1 cut(s) 105
Bst4CI ACNGT 1 cut(s) 224
BstC8I GCNNGC 1 cut(s) 202
BstFNI CGCG 1 cut(s) 422
BstHHI GCGC 1 cut(s) 349
BstMAI GTCTC 2 cut(s) 230, 285
BstMWI GCNNNNNNNGC 1 cut(s) 258
BstSFI CTRYAG 1 cut(s) 309
BstUI CGCG 1 cut(s) 422
BstV2I GAAGAC 1 cut(s) 29
BtgZI GCGATG 1 cut(s) 219
Cac8I GCNNGC 1 cut(s) 202
CfoI GCGC 1 cut(s) 349
CviAII CATG 1 cut(s) 353
CviJI RGCY 3 cut(s) 5, 252, 326
CviKI_1 RGCY 3 cut(s) 5, 252, 326
FaeI CATG 1 cut(s) 356
FatI CATG 1 cut(s) 352
FspI TGCGCA 1 cut(s) 348
GlaI GCGC 1 cut(s) 348
HhaI GCGC 1 cut(s) 349
Hin1II CATG 1 cut(s) 356
Hin6I GCGC 1 cut(s) 347
HinP1I GCGC 1 cut(s) 347
HinfI GANTC 2 cut(s) 34, 366
HphI GGTGA 1 cut(s) 135
Hpy188I TCNGA 1 cut(s) 126
Hpy188III TCNNGA 2 cut(s) 79, 168
HpyCH4III ACNGT 1 cut(s) 224
HpyCH4V TGCA 3 cut(s) 110, 200, 337
HpyF10VI GCNNNNNNNGC 1 cut(s) 258
Hsp92II CATG 1 cut(s) 356
HspAI GCGC 1 cut(s) 347
LpnPI CCDG 3 cut(s) 32, 264, 378
LweI GCATC 1 cut(s) 148
MaeIII GTNAC 1 cut(s) 267
MboII GAAGA 2 cut(s) 29, 34
MhlI GDGCHC 1 cut(s) 263
MluCI AATT 3 cut(s) 171, 284, 402
MseI TTAA 5 cut(s) 57, 69, 287, 417, 428
MslI CAYNNNNRTG 1 cut(s) 95
MvnI CGCG 1 cut(s) 422
MwoI GCNNNNNNNGC 1 cut(s) 258
NlaIII CATG 1 cut(s) 356
NlaIV GGNNCC 1 cut(s) 399
NsbI TGCGCA 1 cut(s) 348
PfeI GAWTC 2 cut(s) 34, 366
PspN4I GGNNCC 1 cut(s) 399
RseI CAYNNNNRTG 1 cut(s) 95
SaqAI TTAA 5 cut(s) 57, 69, 287, 417, 428
SduI GDGCHC 1 cut(s) 263
SetI ASST 2 cut(s) 254, 328
SfaNI GCATC 1 cut(s) 148
SfcI CTRYAG 1 cut(s) 309
SmiMI CAYNNNNRTG 1 cut(s) 95
Sse9I AATT 3 cut(s) 171, 284, 402
SsiI CCGC 1 cut(s) 422
SspI AATATT 1 cut(s) 55
TaaI ACNGT 1 cut(s) 224
TaqI TCGA 1 cut(s) 20
TasI AATT 3 cut(s) 171, 284, 402
TfiI GAWTC 2 cut(s) 34, 366
Tru1I TTAA 5 cut(s) 57, 69, 287, 417, 428
Tru9I TTAA 5 cut(s) 57, 69, 287, 417, 428
TspDTI ATGAA 2 cut(s) 330, 369
TspGWI ACGGA 1 cut(s) 218
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.