RLG00000013795
ERF Family

DDE superfamily endonuclease

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr3
OG0000468
Physical Location & Seq
Reverse (-)
41214219 .. 41215670
1452 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000013795

Sequence Viewer

Length: 366 bp
ATGAAAATTGTTTTGGGTGCCACCGTATCTGTGATTGCTTTAATAATAGAGTGGTATCATAAGACATTTCTTGTTAAAGAGCCTTCACGTGATTGGGATCAAGAAAGACAGTCTTACTTAAACCGTTTGTACGATGGAAGAGAGGAAGATTGTATTGAACAACTACGAGTCAGCAAGATCGCATTTAGGAAGTTATGTGAGATTTTACACCGAATAGGTGGGCTAGTTCGTACAAGAAATGTTCCTATTGAAGAATCCGTAGCTATGTTTCTGGACATACTTGACTCAGGGGACTGCTGGTTTTATCGGTTTGATTTTCGCTATCAGTCTGAGCTCGGAAGAGAGAAAACAGAGAGAGGGAGATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DDE_Tnp_4

Protein Analysis

122

Amino Acids

14.46

Weight (kDa)

6.74

Isoelectric Point (pI)

64.26

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF8040 PF26138 36 - 94 6.2e-13 Domain of unknown function (DUF8040)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000468)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g04030 FvH4_2g09411 FvH4_3g15551 FvH4_3g36421 FvH4_4g11701 FvH4_5g36381 FvH4_6g09143 FvH4_6g09144 FvH4_6g21972
malus_domestica MD00G1096500.v1.1 MD00G1122500.v1.1 MD02G1090600.v1.1 MD02G1173300.v1.1 MD05G1202800.v1.1 MD14G1123600.v1.1
prunus_persica Prupe.1G083600_v2.0.a1 Prupe.1G245300_v2.0.a1 Prupe.5G002100_v2.0.a1 Prupe.6G061200_v2.0.a1
pyrus_communis pycom01g07060 pycom02g13920 pycom04g11780 pycom04g13480 pycom04g21940 pycom06g07950 pycom07g03740 pycom07g03980 pycom09g02010 pycom09g02020 pycom09g11510 pycom09g14260 pycom10g02500 pycom10g15690 pycom12g08730 pycom12g08740 pycom14g19840 pycom15g16780 pycom15g24940 pycom15g25660 pycom16g21630 pycom16g26320
rosa_chinensis RchiOBHm_Chr1g0330371 RchiOBHm_Chr1g0331991 RchiOBHm_Chr6g0300321
rosa_laevigata RLG00000013795
rosa_multiflora Rmu_sc0000060.1_g000010 Rmu_sc0000288.1_g000044 Rmu_sc0002219.1_g000002 Rmu_sc0003995.1_g000003
rosa_roxburghii Rroxscaffold_1G00059020 Rroxscaffold_2G00108450 Rroxscaffold_2G00112460 Rroxscaffold_5G00375700 Rroxscaffold_5G00381640 Rroxscaffold_7G00158590
rosa_rugosa Rorug01G0237300 Rorug01G0237400 Rorug01G0237500 Rorug02G0051900 Rorug03G0260600 Rorug03G0285800 Rorug04G0076800 Rorug04G0162600 Rorug07G0264500 Rorug07G0264500
rosa_samantha Rh2DG003500 Rh3CG244800 Rh4CG334200 Rh5AG318300 Rh5BG549000 Rh7AG126400 Rh7CG118500 Rh7CG154500 Rh7DG025400
rosa_wichuraiana Rw1G026390 Rw2G005400 Rw2G034490 Rw3G019530 Rw3G028000 Rw4G010490 Rw5G010830 Rw5G023340 Rw5G026580 Rw5G041150 Rw6G003010 Rw6G003290 Rw6G010630 Rw6G021220 Rw6G035650 Rw7G014310

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 17
AclWI GGATC 1 cut(s) 105
AcvI CACGTG 1 cut(s) 89
AfaI GTAC 2 cut(s) 131, 232
AgsI TTSAA 2 cut(s) 158, 251
AjuI GAANNNNNNNTTGG 1 cut(s) 28
AluBI AGCT 2 cut(s) 263, 334
AluI AGCT 2 cut(s) 263, 334
Alw21I GWGCWC 1 cut(s) 336
AlwI GGATC 1 cut(s) 105
BanI GGYRCC 1 cut(s) 17
BanII GRGCYC 1 cut(s) 336
BbrPI CACGTG 1 cut(s) 89
Bbv12I GWGCWC 1 cut(s) 336
BccI CCATC 1 cut(s) 128
BfaI CTAG 1 cut(s) 224
BmiI GGNNCC 1 cut(s) 19
BsaAI YACGTR 1 cut(s) 89
BsaBI GATNNNNATC 1 cut(s) 96
Bse8I GATNNNNATC 1 cut(s) 96
BseJI GATNNNNATC 1 cut(s) 96
BseMII CTCAG 2 cut(s) 300, 321
BshNI GGYRCC 1 cut(s) 17
BsiHKAI GWGCWC 1 cut(s) 336
BslFI GGGAC 1 cut(s) 305
BsmFI GGGAC 1 cut(s) 305
Bsp1286I GDGCHC 1 cut(s) 336
Bsp143I GATC 2 cut(s) 97, 177
BspCNI CTCAG 2 cut(s) 299, 322
BspLI GGNNCC 1 cut(s) 19
BspPI GGATC 1 cut(s) 105
BspT107I GGYRCC 1 cut(s) 17
BssMI GATC 2 cut(s) 97, 177
Bst4CI ACNGT 3 cut(s) 25, 111, 125
Bst6I CTCTTC 2 cut(s) 133, 334
BstBAI YACGTR 1 cut(s) 89
BstDEI CTNAG 2 cut(s) 286, 330
BstKTI GATC 2 cut(s) 100, 180
BstMBI GATC 2 cut(s) 97, 177
Csp6I GTAC 2 cut(s) 130, 231
CviJI RGCY 4 cut(s) 82, 223, 263, 334
CviKI_1 RGCY 4 cut(s) 82, 223, 263, 334
CviQI GTAC 2 cut(s) 130, 231
DdeI CTNAG 2 cut(s) 286, 330
DpnI GATC 2 cut(s) 99, 179
DpnII GATC 2 cut(s) 97, 177
Eam1104I CTCTTC 2 cut(s) 133, 334
EarI CTCTTC 2 cut(s) 133, 334
Ecl136II GAGCTC 1 cut(s) 334
Eco24I GRGCYC 1 cut(s) 336
Eco53kI GAGCTC 1 cut(s) 334
Eco72I CACGTG 1 cut(s) 89
EcoICRI GAGCTC 1 cut(s) 334
EcoT38I GRGCYC 1 cut(s) 336
FaiI YATR 4 cut(s) 60, 196, 266, 278
FalI AAGNNNNNCTT 2 cut(s) 97, 129
FaqI GGGAC 1 cut(s) 305
FriOI GRGCYC 1 cut(s) 336
FspBI CTAG 1 cut(s) 224
HinfI GANTC 3 cut(s) 168, 254, 284
Hpy188I TCNGA 2 cut(s) 331, 338
Hpy188III TCNNGA 2 cut(s) 101, 272
HpyAV CCTTC 1 cut(s) 93
HpyCH4III ACNGT 3 cut(s) 25, 111, 125
HpyCH4IV ACGT 1 cut(s) 88
HpyF3I CTNAG 2 cut(s) 286, 330
HpySE526I ACGT 1 cut(s) 88
Kzo9I GATC 2 cut(s) 97, 177
LpnPI CCDG 3 cut(s) 257, 273, 283
MaeI CTAG 1 cut(s) 224
MaeII ACGT 1 cut(s) 88
MalI GATC 2 cut(s) 99, 179
MboI GATC 2 cut(s) 97, 177
MboII GAAGA 4 cut(s) 150, 158, 263, 351
MhlI GDGCHC 1 cut(s) 336
MluCI AATT 1 cut(s) 6
MlyI GAGTC 2 cut(s) 177, 278
MnlI CCTC 2 cut(s) 136, 350
MseI TTAA 3 cut(s) 41, 75, 119
NdeII GATC 2 cut(s) 97, 177
NlaIV GGNNCC 1 cut(s) 19
PfeI GAWTC 1 cut(s) 254
PleI GAGTC 2 cut(s) 176, 278
PmaCI CACGTG 1 cut(s) 89
PmlI CACGTG 1 cut(s) 89
PpsI GAGTC 2 cut(s) 176, 278
Ppu21I YACGTR 1 cut(s) 89
Psp124BI GAGCTC 1 cut(s) 336
PspCI CACGTG 1 cut(s) 89
PspN4I GGNNCC 1 cut(s) 19
RsaI GTAC 2 cut(s) 131, 232
RsaNI GTAC 2 cut(s) 130, 231
SacI GAGCTC 1 cut(s) 336
SaqAI TTAA 3 cut(s) 41, 75, 119
Sau3AI GATC 2 cut(s) 97, 177
SchI GAGTC 2 cut(s) 177, 278
SduI GDGCHC 1 cut(s) 336
SetI ASST 4 cut(s) 91, 220, 265, 336
Sse9I AATT 1 cut(s) 6
SspMI CTAG 1 cut(s) 224
SstI GAGCTC 1 cut(s) 336
TaaI ACNGT 3 cut(s) 25, 111, 125
TaiI ACGT 1 cut(s) 91
TasI AATT 1 cut(s) 6
TfiI GAWTC 1 cut(s) 254
Tru1I TTAA 3 cut(s) 41, 75, 119
Tru9I TTAA 3 cut(s) 41, 75, 119
TspDTI ATGAA 1 cut(s) 17
TspGWI ACGGA 1 cut(s) 247
XspI CTAG 1 cut(s) 224
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.