Rorug03G0260600
ERF Family

DDE superfamily endonuclease

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000003
OG0000468
Physical Location & Seq
Forward (+)
25078895 .. 25079146
252 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug03G0260600.1

Sequence Viewer

Length: 252 bp
ATGGCTCCTCGTGGTTCAGTTGCTGCCACAGCTGGAATGCGCAGCCGTCGTATCGGTGGAGGCGGCAACTCCAGCTCCAAAGGCATGGGCGGCAGCGACGGTGGCTCTAGTGCGGGAAACAACATACTCAGGTTCTACACCGACGACGCTCCTGGCTTGAAGATCTCCCCCACCGTCATGCTCGTCATGAGCCTCTGCTTCATCGGCTTCATCACTGCCCTCCACGTCTTCGGCAAGCTCTACCTCCACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DDE_Tnp_4

Protein Analysis

83

Amino Acids

8.49

Weight (kDa)

10.17

Isoelectric Point (pI)

58.35

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Sec61_beta PF03911 39 - 78 2.4e-16 Sec61beta family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000468)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g04030 FvH4_2g09411 FvH4_3g15551 FvH4_3g36421 FvH4_4g11701 FvH4_5g36381 FvH4_6g09143 FvH4_6g09144 FvH4_6g21972
malus_domestica MD00G1096500.v1.1 MD00G1122500.v1.1 MD02G1090600.v1.1 MD02G1173300.v1.1 MD05G1202800.v1.1 MD14G1123600.v1.1
prunus_persica Prupe.1G083600_v2.0.a1 Prupe.1G245300_v2.0.a1 Prupe.5G002100_v2.0.a1 Prupe.6G061200_v2.0.a1
pyrus_communis pycom01g07060 pycom02g13920 pycom04g11780 pycom04g13480 pycom04g21940 pycom06g07950 pycom07g03740 pycom07g03980 pycom09g02010 pycom09g02020 pycom09g11510 pycom09g14260 pycom10g02500 pycom10g15690 pycom12g08730 pycom12g08740 pycom14g19840 pycom15g16780 pycom15g24940 pycom15g25660 pycom16g21630 pycom16g26320
rosa_chinensis RchiOBHm_Chr1g0330371 RchiOBHm_Chr1g0331991 RchiOBHm_Chr6g0300321
rosa_laevigata RLG00000013795
rosa_multiflora Rmu_sc0000060.1_g000010 Rmu_sc0000288.1_g000044 Rmu_sc0002219.1_g000002 Rmu_sc0003995.1_g000003
rosa_roxburghii Rroxscaffold_1G00059020 Rroxscaffold_2G00108450 Rroxscaffold_2G00112460 Rroxscaffold_5G00375700 Rroxscaffold_5G00381640 Rroxscaffold_7G00158590
rosa_rugosa Rorug01G0237300 Rorug01G0237400 Rorug01G0237500 Rorug02G0051900 Rorug03G0260600 Rorug03G0285800 Rorug04G0076800 Rorug04G0162600 Rorug07G0264500 Rorug07G0264500
rosa_samantha Rh2DG003500 Rh3CG244800 Rh4CG334200 Rh5AG318300 Rh5BG549000 Rh7AG126400 Rh7CG118500 Rh7CG154500 Rh7DG025400
rosa_wichuraiana Rw1G026390 Rw2G005400 Rw2G034490 Rw3G019530 Rw3G028000 Rw4G010490 Rw5G010830 Rw5G023340 Rw5G026580 Rw5G041150 Rw6G003010 Rw6G003290 Rw6G010630 Rw6G021220 Rw6G035650 Rw7G014310

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 41
AciI CCGC 3 cut(s) 63, 90, 113
AgsI TTSAA 1 cut(s) 160
AjiI CACGTC 1 cut(s) 226
AjnI CCWGG 1 cut(s) 151
AluBI AGCT 3 cut(s) 32, 75, 238
AluI AGCT 3 cut(s) 32, 75, 238
AlwNI CAGNNNCTG 1 cut(s) 23
ApeKI GCWGC 3 cut(s) 23, 42, 93
AspLEI GCGC 1 cut(s) 42
BauI CACGAG 1 cut(s) 9
BbsI GAAGAC 1 cut(s) 220
BbvI GCAGC 3 cut(s) 10, 54, 105
BceAI ACGGC 1 cut(s) 30
BciT130I CCWGG 1 cut(s) 153
BfaI CTAG 1 cut(s) 108
BglII AGATCT 1 cut(s) 162
BisI GCNGC 5 cut(s) 24, 43, 64, 91, 94
BlsI GCNGC 5 cut(s) 25, 44, 65, 92, 95
Bme1390I CCNGG 1 cut(s) 153
BmgBI CACGTC 1 cut(s) 226
BmiI GGNNCC 1 cut(s) 6
BmrFI CCNGG 1 cut(s) 153
BpiI GAAGAC 1 cut(s) 220
BpmI CTGGAG 1 cut(s) 55
BsaXI ACNNNNNCTCC 2 cut(s) 59, 89
BseBI CCWGG 1 cut(s) 153
BseMII CTCAG 1 cut(s) 142
BseXI GCAGC 3 cut(s) 10, 54, 105
BsmI GAATGC 1 cut(s) 42
Bsp143I GATC 1 cut(s) 162
BspACI CCGC 3 cut(s) 63, 90, 113
BspCNI CTCAG 1 cut(s) 141
BspHI TCATGA 1 cut(s) 186
BspLI GGNNCC 1 cut(s) 6
BssMI GATC 1 cut(s) 162
BssSI CACGAG 1 cut(s) 9
Bst2BI CACGAG 1 cut(s) 9
Bst2UI CCWGG 1 cut(s) 153
Bst4CI ACNGT 2 cut(s) 101, 175
BstC8I GCNNGC 1 cut(s) 236
BstDEI CTNAG 1 cut(s) 128
BstHHI GCGC 1 cut(s) 42
BstKTI GATC 1 cut(s) 165
BstMBI GATC 1 cut(s) 162
BstMWI GCNNNNNNNGC 6 cut(s) 29, 72, 81, 90, 102, 204
BstNI CCWGG 1 cut(s) 153
BstSCI CCNGG 1 cut(s) 151
BstV1I GCAGC 3 cut(s) 10, 54, 105
BstV2I GAAGAC 1 cut(s) 220
BstX2I RGATCY 1 cut(s) 162
BstXI CCANNNNNNTGG 1 cut(s) 85
BstYI RGATCY 1 cut(s) 162
BtrI CACGTC 1 cut(s) 226
BtsI GCAGTG 1 cut(s) 213
BtsIMutI CAGTG 2 cut(s) 213, 247
Cac8I GCNNGC 1 cut(s) 236
CaiI CAGNNNCTG 1 cut(s) 23
CciI TCATGA 1 cut(s) 186
CfoI GCGC 1 cut(s) 42
CseI GACGC 1 cut(s) 155
CviAII CATG 3 cut(s) 85, 178, 187
CviJI RGCY 9 cut(s) 5, 32, 45, 75, 105, 156, 192, 207, 238
CviKI_1 RGCY 9 cut(s) 5, 32, 45, 75, 105, 156, 192, 207, 238
DdeI CTNAG 1 cut(s) 128
DpnI GATC 1 cut(s) 164
DpnII GATC 1 cut(s) 162
EcoRII CCWGG 1 cut(s) 151
FaeI CATG 3 cut(s) 88, 181, 190
FaiI YATR 4 cut(s) 86, 125, 179, 188
FatI CATG 3 cut(s) 84, 177, 186
FauI CCCGC 1 cut(s) 106
Fnu4HI GCNGC 5 cut(s) 24, 43, 64, 91, 94
Fsp4HI GCNGC 5 cut(s) 24, 43, 64, 91, 94
FspBI CTAG 1 cut(s) 108
FspI TGCGCA 1 cut(s) 41
GlaI GCGC 1 cut(s) 41
GluI GCNGC 5 cut(s) 24, 43, 64, 91, 94
GsuI CTGGAG 1 cut(s) 55
HgaI GACGC 1 cut(s) 155
HhaI GCGC 1 cut(s) 42
Hin1II CATG 3 cut(s) 88, 181, 190
Hin6I GCGC 1 cut(s) 40
HinP1I GCGC 1 cut(s) 40
Hpy188III TCNNGA 1 cut(s) 187
Hpy99I CGWCG 4 cut(s) 51, 101, 146, 149
HpyCH4III ACNGT 2 cut(s) 101, 175
HpyCH4IV ACGT 1 cut(s) 225
HpyF10VI GCNNNNNNNGC 6 cut(s) 29, 72, 81, 90, 102, 204
HpyF3I CTNAG 1 cut(s) 128
HpySE526I ACGT 1 cut(s) 225
Hsp92II CATG 3 cut(s) 88, 181, 190
HspAI GCGC 1 cut(s) 40
Kzo9I GATC 1 cut(s) 162
LmnI GCTCC 3 cut(s) 10, 80, 154
LpnPI CCDG 5 cut(s) 18, 85, 115, 138, 165
Lsp1109I GCAGC 3 cut(s) 10, 54, 105
MaeI CTAG 1 cut(s) 108
MaeII ACGT 1 cut(s) 225
MalI GATC 1 cut(s) 164
MboI GATC 1 cut(s) 162
MboII GAAGA 2 cut(s) 172, 220
MflI RGATCY 1 cut(s) 162
MnlI CCTC 4 cut(s) 18, 53, 203, 230
MslI CAYNNNNRTG 1 cut(s) 176
MspA1I CMGCKG 1 cut(s) 32
MspR9I CCNGG 1 cut(s) 153
Mva1269I GAATGC 1 cut(s) 42
MvaI CCWGG 1 cut(s) 153
MwoI GCNNNNNNNGC 6 cut(s) 29, 72, 81, 90, 102, 204
NdeII GATC 1 cut(s) 162
NlaIII CATG 3 cut(s) 88, 181, 190
NlaIV GGNNCC 1 cut(s) 6
NsbI TGCGCA 1 cut(s) 41
PagI TCATGA 1 cut(s) 186
PctI GAATGC 1 cut(s) 42
PkrI GCNGC 5 cut(s) 25, 44, 65, 92, 95
Psp6I CCWGG 1 cut(s) 151
PspGI CCWGG 1 cut(s) 151
PspN4I GGNNCC 1 cut(s) 6
PstNI CAGNNNCTG 1 cut(s) 23
PsuI RGATCY 1 cut(s) 162
PvuII CAGCTG 1 cut(s) 32
RseI CAYNNNNRTG 1 cut(s) 176
SatI GCNGC 5 cut(s) 24, 43, 64, 91, 94
Sau3AI GATC 1 cut(s) 162
ScrFI CCNGG 1 cut(s) 153
SetI ASST 6 cut(s) 34, 77, 134, 228, 240, 246
SmiMI CAYNNNNRTG 1 cut(s) 176
SsiI CCGC 3 cut(s) 63, 90, 113
SspMI CTAG 1 cut(s) 108
StyD4I CCNGG 1 cut(s) 151
TaaI ACNGT 2 cut(s) 101, 175
TaiI ACGT 1 cut(s) 228
TauI GCSGC 2 cut(s) 66, 93
TscAI CASTG 1 cut(s) 220
TseI GCWGC 3 cut(s) 23, 42, 93
TspDTI ATGAA 2 cut(s) 190, 199
TspRI CASTG 1 cut(s) 220
XspI CTAG 1 cut(s) 108
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.