pycom15g24940

Ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr15
OG0000468
Physical Location & Seq
Forward (+)
19230855 .. 19231942
1088 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom15g24940.3

Sequence Viewer

Length: 936 bp
ATGGATGAATATGAGACTCAATTCTTTGTTCTTTTGAACGTTTGGATTATAATGGCACAAGTTTTTACTATGAATGCACAATTGTTGAGGTATAGACAACAACAAAGGAGACAGCGCGAAATAGCTAGTTTAGAGCAGAGGACATTTGTTAGACTTCATGTTAGGAGAGAGGAAATAAATCATATCACGCGATTGAGTGATACTAACTGTTTATTGGAGCTACGAATGGATAGGAATGCATTTGCAGTTTTATGTGATTTACTACAAACTTGTGGTGGATTGGTAGATGATGGTCATGTTACAATAGAGGAGCAAGTAGCTACTTTTATTAACATATTAGCCCACCACAATAAAAATAGGTCAATGCAAGTTAGATTCATTAGGTCTGGTGAAACTATCAGTCGGTATGTCCGTAGAGTATTGCGTGCGTTGCTCAGTTTGCAAGATGTGTTGTTTGCAAAACCAACCCCTATCCTAGAGGATTGCACAAAATCGAGATGGAAATGCTTCAAGGGTTGCTTAGGAGCGCTAGATGGAACATACATAGGGGTCACTGTGCCTGATGTCGATAGACCAAGATATAAAACAAGGAAGGGTCATATAGCAACTAATGTGTTGGGCGTATGCACACACGACCTCAAATTCGTATATGTGTTATCCGGTTGGGAGGGATCAGCTACTGATTTGAGAGTTCTTGGTGACGCTGTTACTAGAGCTAATGGCCTCAAGGTCCCAACTGGTACATACTATTTGGTTGATTCCGGATATACGAATGGTGAGGGTTTTCTGGCACCGTATAGAGGCACTAGATACCATTTGCAAGAGTGGGAAGACAATTCACGTGCACCTAGGAATCATGAAGAATATTTTAATATGAAACACTCACGTGCTAGGAATGTCATTGAGAGATGTTTTGGCCTCCTCAAACGACGTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DDE_Tnp_4

Protein Analysis

312

Amino Acids

36.09

Weight (kDa)

9.37

Isoelectric Point (pI)

46.93

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000468)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g04030 FvH4_2g09411 FvH4_3g15551 FvH4_3g36421 FvH4_4g11701 FvH4_5g36381 FvH4_6g09143 FvH4_6g09144 FvH4_6g21972
malus_domestica MD00G1096500.v1.1 MD00G1122500.v1.1 MD02G1090600.v1.1 MD02G1173300.v1.1 MD05G1202800.v1.1 MD14G1123600.v1.1
prunus_persica Prupe.1G083600_v2.0.a1 Prupe.1G245300_v2.0.a1 Prupe.5G002100_v2.0.a1 Prupe.6G061200_v2.0.a1
pyrus_communis pycom01g07060 pycom02g13920 pycom04g11780 pycom04g13480 pycom04g21940 pycom06g07950 pycom07g03740 pycom07g03980 pycom09g02010 pycom09g02020 pycom09g11510 pycom09g14260 pycom10g02500 pycom10g15690 pycom12g08730 pycom12g08740 pycom14g19840 pycom15g16780 pycom15g24940 pycom15g25660 pycom16g21630 pycom16g26320
rosa_chinensis RchiOBHm_Chr1g0330371 RchiOBHm_Chr1g0331991 RchiOBHm_Chr6g0300321
rosa_laevigata RLG00000013795
rosa_multiflora Rmu_sc0000060.1_g000010 Rmu_sc0000288.1_g000044 Rmu_sc0002219.1_g000002 Rmu_sc0003995.1_g000003
rosa_roxburghii Rroxscaffold_1G00059020 Rroxscaffold_2G00108450 Rroxscaffold_2G00112460 Rroxscaffold_5G00375700 Rroxscaffold_5G00381640 Rroxscaffold_7G00158590
rosa_rugosa Rorug01G0237300 Rorug01G0237400 Rorug01G0237500 Rorug02G0051900 Rorug03G0260600 Rorug03G0285800 Rorug04G0076800 Rorug04G0162600 Rorug07G0264500 Rorug07G0264500
rosa_samantha Rh2DG003500 Rh3CG244800 Rh4CG334200 Rh5AG318300 Rh5BG549000 Rh7AG126400 Rh7CG118500 Rh7CG154500 Rh7DG025400
rosa_wichuraiana Rw1G026390 Rw2G005400 Rw2G034490 Rw3G019530 Rw3G028000 Rw4G010490 Rw5G010830 Rw5G023340 Rw5G026580 Rw5G041150 Rw6G003010 Rw6G003290 Rw6G010630 Rw6G021220 Rw6G035650 Rw7G014310

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 50
AccB1I GGYRCC 1 cut(s) 790
AccII CGCG 2 cut(s) 117, 190
AccIII TCCGGA 1 cut(s) 761
AclI AACGTT 1 cut(s) 39
AclWI GGATC 1 cut(s) 679
AcsI RAATTY 1 cut(s) 641
AcvI CACGTG 2 cut(s) 842, 887
AfaI GTAC 1 cut(s) 742
AfeI AGCGCT 1 cut(s) 528
AfiI CCNNNNNNNGG 1 cut(s) 800
AgsI TTSAA 2 cut(s) 37, 511
AleI CACNNNNGTG 1 cut(s) 885
AluBI AGCT 5 cut(s) 125, 220, 320, 677, 716
AluI AGCT 5 cut(s) 125, 220, 320, 677, 716
Alw21I GWGCWC 1 cut(s) 847
Alw26I GTCTC 2 cut(s) 8, 103
Alw44I GTGCAC 1 cut(s) 843
AlwI GGATC 1 cut(s) 679
AlwNI CAGNNNCTG 1 cut(s) 680
Aor13HI TCCGGA 1 cut(s) 761
Aor51HI AGCGCT 1 cut(s) 528
AoxI GGCC 2 cut(s) 721, 916
ApaLI GTGCAC 1 cut(s) 843
ApoI RAATTY 1 cut(s) 641
ArsI GACNNNNNNTTYG 2 cut(s) 626, 658
Asp700I GAANNNNTTC 1 cut(s) 506
AspA2I CCTAGG 1 cut(s) 848
AspLEI GCGC 2 cut(s) 117, 529
AspS9I GGNCC 1 cut(s) 730
AsuHPI GGTGA 3 cut(s) 401, 710, 788
AvaII GGWCC 1 cut(s) 730
AvrII CCTAGG 1 cut(s) 848
BaeGI GKGCMC 1 cut(s) 847
BanI GGYRCC 1 cut(s) 790
BbrPI CACGTG 2 cut(s) 842, 887
BbsI GAAGAC 1 cut(s) 837
Bbv12I GWGCWC 1 cut(s) 847
BccI CCATC 3 cut(s) 284, 492, 527
BcoDI GTCTC 2 cut(s) 8, 103
BfaI CTAG 7 cut(s) 126, 476, 530, 711, 807, 849, 891
BfoI RGCGCY 1 cut(s) 530
BlnI CCTAGG 1 cut(s) 848
Bme18I GGWCC 1 cut(s) 730
BmgT120I GGNCC 1 cut(s) 730
BmiI GGNNCC 2 cut(s) 732, 792
BpiI GAAGAC 1 cut(s) 837
Bpu10I CCTNAGC 1 cut(s) 520
BpuEI CTTGAG 1 cut(s) 710
BsaAI YACGTR 2 cut(s) 842, 887
BsaJI CCNNGG 1 cut(s) 848
BsaWI WCCGGW 2 cut(s) 659, 761
Bsc4I CCNNNNNNNGG 1 cut(s) 800
Bse1I ACTGG 1 cut(s) 742
BseAI TCCGGA 1 cut(s) 761
BseDI CCNNGG 1 cut(s) 848
BseGI GGATG 1 cut(s) 10
BseLI CCNNNNNNNGG 1 cut(s) 800
BseMII CTCAG 1 cut(s) 448
BseNI ACTGG 1 cut(s) 742
BseRI GAGGAG 2 cut(s) 323, 911
BseSI GKGCMC 1 cut(s) 847
Bsh1236I CGCG 2 cut(s) 117, 190
BshFI GGCC 2 cut(s) 723, 918
BshNI GGYRCC 1 cut(s) 790
BsiHKAI GWGCWC 1 cut(s) 847
BsiSI CCGG 2 cut(s) 660, 762
BslFI GGGAC 1 cut(s) 716
BslI CCNNNNNNNGG 1 cut(s) 800
BsmAI GTCTC 2 cut(s) 8, 103
BsmFI GGGAC 1 cut(s) 716
BsmI GAATGC 2 cut(s) 79, 241
BsnI GGCC 2 cut(s) 723, 918
Bsp1286I GDGCHC 1 cut(s) 847
Bsp13I TCCGGA 1 cut(s) 761
Bsp143I GATC 1 cut(s) 671
BspANI GGCC 2 cut(s) 723, 918
BspCNI CTCAG 1 cut(s) 447
BspEI TCCGGA 1 cut(s) 761
BspFNI CGCG 2 cut(s) 117, 190
BspHI TCATGA 1 cut(s) 856
BspLI GGNNCC 2 cut(s) 732, 792
BspPI GGATC 1 cut(s) 679
BspT107I GGYRCC 1 cut(s) 790
BsrI ACTGG 1 cut(s) 742
BssECI CCNNGG 1 cut(s) 848
BssMI GATC 1 cut(s) 671
BssT1I CCWWGG 1 cut(s) 848
Bst4CI ACNGT 3 cut(s) 209, 556, 795
BstBAI YACGTR 2 cut(s) 842, 887
BstC8I GCNNGC 1 cut(s) 426
BstDEI CTNAG 2 cut(s) 434, 520
BstF5I GGATG 1 cut(s) 10
BstFNI CGCG 2 cut(s) 117, 190
BstH2I RGCGCY 1 cut(s) 530
BstHHI GCGC 2 cut(s) 117, 529
BstKTI GATC 1 cut(s) 674
BstMAI GTCTC 2 cut(s) 8, 103
BstMBI GATC 1 cut(s) 671
BstMWI GCNNNNNNNGC 2 cut(s) 430, 439
BstSLI GKGCMC 1 cut(s) 847
BstUI CGCG 2 cut(s) 117, 190
BstV2I GAAGAC 1 cut(s) 837
BsuRI GGCC 2 cut(s) 723, 918
BtsCI GGATG 1 cut(s) 10
BtsIMutI CAGTG 1 cut(s) 552
Cac8I GCNNGC 1 cut(s) 426
CaiI CAGNNNCTG 1 cut(s) 680
CciI TCATGA 1 cut(s) 856
CfoI GCGC 2 cut(s) 117, 529
Cfr13I GGNCC 1 cut(s) 730
CseI GACGC 1 cut(s) 710
Csp6I GTAC 1 cut(s) 741
CviAII CATG 3 cut(s) 158, 296, 857
CviJI RGCY 8 cut(s) 125, 220, 320, 341, 677, 716, 723, 918
CviKI_1 RGCY 8 cut(s) 125, 220, 320, 341, 677, 716, 723, 918
CviQI GTAC 1 cut(s) 741
DdeI CTNAG 2 cut(s) 434, 520
DpnI GATC 1 cut(s) 673
DpnII GATC 1 cut(s) 671
Eco130I CCWWGG 1 cut(s) 848
Eco47I GGWCC 1 cut(s) 730
Eco47III AGCGCT 1 cut(s) 528
Eco72I CACGTG 2 cut(s) 842, 887
EcoO109I RGGNCCY 1 cut(s) 730
EcoT14I CCWWGG 1 cut(s) 848
EcoT22I ATGCAT 1 cut(s) 241
ErhI CCWWGG 1 cut(s) 848
FaeI CATG 3 cut(s) 161, 299, 860
FalI AAGNNNNNCTT 2 cut(s) 503, 535
FaqI GGGAC 1 cut(s) 716
FatI CATG 3 cut(s) 157, 295, 856
FokI GGATG 1 cut(s) 17
FspBI CTAG 7 cut(s) 126, 476, 530, 711, 807, 849, 891
GlaI GCGC 2 cut(s) 116, 528
HaeII RGCGCY 1 cut(s) 530
HaeIII GGCC 2 cut(s) 723, 918
HapII CCGG 2 cut(s) 660, 762
HgaI GACGC 1 cut(s) 710
HhaI GCGC 2 cut(s) 117, 529
Hin1II CATG 3 cut(s) 161, 299, 860
Hin6I GCGC 2 cut(s) 115, 527
HinP1I GCGC 2 cut(s) 115, 527
HinfI GANTC 4 cut(s) 16, 375, 758, 853
HpaII CCGG 2 cut(s) 660, 762
HphI GGTGA 3 cut(s) 401, 710, 788
Hpy166II GTNNAC 1 cut(s) 845
Hpy188III TCNNGA 3 cut(s) 495, 762, 857
Hpy8I GTNNAC 1 cut(s) 845
Hpy99I CGWCG 1 cut(s) 933
HpyAV CCTTC 1 cut(s) 586
HpyCH4III ACNGT 3 cut(s) 209, 556, 795
HpyCH4IV ACGT 4 cut(s) 39, 841, 886, 931
HpyF10VI GCNNNNNNNGC 2 cut(s) 430, 439
HpyF3I CTNAG 2 cut(s) 434, 520
HpySE526I ACGT 4 cut(s) 39, 841, 886, 931
Hsp92II CATG 3 cut(s) 161, 299, 860
HspAI GCGC 2 cut(s) 115, 527
Kpn2I TCCGGA 1 cut(s) 761
Kzo9I GATC 1 cut(s) 671
LmnI GCTCC 3 cut(s) 217, 310, 524
LpnPI CCDG 6 cut(s) 372, 573, 673, 723, 773, 775
MaeI CTAG 7 cut(s) 126, 476, 530, 711, 807, 849, 891
MaeII ACGT 4 cut(s) 39, 841, 886, 931
MaeIII GTNAC 4 cut(s) 298, 550, 698, 706
MalI GATC 1 cut(s) 673
MboI GATC 1 cut(s) 671
MboII GAAGA 2 cut(s) 842, 872
MfeI CAATTG 1 cut(s) 80
MhlI GDGCHC 1 cut(s) 847
MluCI AATT 4 cut(s) 20, 80, 641, 835
MlyI GAGTC 1 cut(s) 10
Mph1103I ATGCAT 1 cut(s) 241
MroI TCCGGA 1 cut(s) 761
MroXI GAANNNNTTC 1 cut(s) 506
MseI TTAA 2 cut(s) 330, 870
MslI CAYNNNNRTG 1 cut(s) 885
MspI CCGG 2 cut(s) 660, 762
MunI CAATTG 1 cut(s) 80
Mva1269I GAATGC 2 cut(s) 79, 241
MvnI CGCG 2 cut(s) 117, 190
MwoI GCNNNNNNNGC 2 cut(s) 430, 439
NdeII GATC 1 cut(s) 671
NlaIII CATG 3 cut(s) 161, 299, 860
NlaIV GGNNCC 2 cut(s) 732, 792
NmuCI GTSAC 2 cut(s) 550, 698
NsiI ATGCAT 1 cut(s) 241
OliI CACNNNNGTG 1 cut(s) 885
PagI TCATGA 1 cut(s) 856
PcsI WCGNNNNNNNCGW 1 cut(s) 409
PctI GAATGC 2 cut(s) 79, 241
PdmI GAANNNNTTC 1 cut(s) 506
PfeI GAWTC 3 cut(s) 375, 758, 853
PleI GAGTC 1 cut(s) 10
PmaCI CACGTG 2 cut(s) 842, 887
PmlI CACGTG 2 cut(s) 842, 887
PpsI GAGTC 1 cut(s) 10
Ppu21I YACGTR 2 cut(s) 842, 887
PpuMI RGGWCCY 1 cut(s) 730
PsiI TTATAA 1 cut(s) 50
Psp1406I AACGTT 1 cut(s) 39
Psp5II RGGWCCY 1 cut(s) 730
PspCI CACGTG 2 cut(s) 842, 887
PspN4I GGNNCC 2 cut(s) 732, 792
PspPI GGNCC 1 cut(s) 730
PspPPI RGGWCCY 1 cut(s) 730
PstNI CAGNNNCTG 1 cut(s) 680
RsaI GTAC 1 cut(s) 742
RsaNI GTAC 1 cut(s) 741
RseI CAYNNNNRTG 1 cut(s) 885
SaqAI TTAA 2 cut(s) 330, 870
Sau3AI GATC 1 cut(s) 671
Sau96I GGNCC 1 cut(s) 730
SchI GAGTC 1 cut(s) 10
SduI GDGCHC 1 cut(s) 847
SinI GGWCC 1 cut(s) 730
SmiMI CAYNNNNRTG 1 cut(s) 885
SmlI CTYRAG 1 cut(s) 725
SmoI CTYRAG 1 cut(s) 725
Sse9I AATT 4 cut(s) 20, 80, 641, 835
SspI AATATT 1 cut(s) 866
SspMI CTAG 7 cut(s) 126, 476, 530, 711, 807, 849, 891
StyI CCWWGG 1 cut(s) 848
TaaI ACNGT 3 cut(s) 209, 556, 795
TaiI ACGT 4 cut(s) 42, 844, 889, 934
TaqI TCGA 2 cut(s) 494, 567
TasI AATT 4 cut(s) 20, 80, 641, 835
TfiI GAWTC 3 cut(s) 375, 758, 853
Tru1I TTAA 2 cut(s) 330, 870
Tru9I TTAA 2 cut(s) 330, 870
TscAI CASTG 1 cut(s) 559
TseFI GTSAC 2 cut(s) 550, 698
Tsp45I GTSAC 2 cut(s) 550, 698
TspDTI ATGAA 6 cut(s) 21, 86, 146, 367, 873, 890
TspGWI ACGGA 1 cut(s) 401
TspRI CASTG 1 cut(s) 559
VneI GTGCAC 1 cut(s) 843
VpaK11BI GGWCC 1 cut(s) 730
XapI RAATTY 1 cut(s) 641
XmaJI CCTAGG 1 cut(s) 848
XmnI GAANNNNTTC 1 cut(s) 506
XspI CTAG 7 cut(s) 126, 476, 530, 711, 807, 849, 891
Zsp2I ATGCAT 1 cut(s) 241
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.