Ribonuclease H protein
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| DUF8040 | PF26138 | 57 - 145 | 4.6e-21 | Domain of unknown function (DUF8040) |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 50 |
| AccII | CGCG | 1 cut(s) | 190 |
| AciI | CCGC | 1 cut(s) | 412 |
| AclI | AACGTT | 1 cut(s) | 39 |
| AfaI | GTAC | 2 cut(s) | 57, 427 |
| AflIII | ACRYGT | 1 cut(s) | 447 |
| AgsI | TTSAA | 1 cut(s) | 37 |
| AjiI | CACGTC | 1 cut(s) | 448 |
| AluBI | AGCT | 3 cut(s) | 125, 220, 320 |
| AluI | AGCT | 3 cut(s) | 125, 220, 320 |
| Alw26I | GTCTC | 2 cut(s) | 8, 103 |
| ApeKI | GCWGC | 1 cut(s) | 220 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 437, 469 |
| AseI | ATTAAT | 1 cut(s) | 536 |
| AsuHPI | GGTGA | 1 cut(s) | 401 |
| BauI | CACGAG | 1 cut(s) | 270 |
| BbvI | GCAGC | 1 cut(s) | 207 |
| BccI | CCATC | 1 cut(s) | 284 |
| BcoDI | GTCTC | 2 cut(s) | 8, 103 |
| BfaI | CTAG | 2 cut(s) | 126, 321 |
| BisI | GCNGC | 1 cut(s) | 221 |
| BlsI | GCNGC | 1 cut(s) | 222 |
| BmgBI | CACGTC | 1 cut(s) | 448 |
| BmsI | GCATC | 1 cut(s) | 528 |
| BseGI | GGATG | 1 cut(s) | 10 |
| BseMII | CTCAG | 1 cut(s) | 448 |
| BseXI | GCAGC | 1 cut(s) | 207 |
| Bsh1236I | CGCG | 1 cut(s) | 190 |
| BsiWI | CGTACG | 1 cut(s) | 425 |
| BsmAI | GTCTC | 2 cut(s) | 8, 103 |
| BsmI | GAATGC | 2 cut(s) | 79, 241 |
| BspACI | CCGC | 1 cut(s) | 412 |
| BspCNI | CTCAG | 1 cut(s) | 447 |
| BspFNI | CGCG | 1 cut(s) | 190 |
| BssSI | CACGAG | 1 cut(s) | 270 |
| Bst2BI | CACGAG | 1 cut(s) | 270 |
| Bst4CI | ACNGT | 1 cut(s) | 209 |
| BstDEI | CTNAG | 1 cut(s) | 434 |
| BstF5I | GGATG | 1 cut(s) | 10 |
| BstFNI | CGCG | 1 cut(s) | 190 |
| BstMAI | GTCTC | 2 cut(s) | 8, 103 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 430, 439 |
| BstUI | CGCG | 1 cut(s) | 190 |
| BstV1I | GCAGC | 1 cut(s) | 207 |
| BtrI | CACGTC | 1 cut(s) | 448 |
| BtsCI | GGATG | 1 cut(s) | 10 |
| Csp6I | GTAC | 2 cut(s) | 56, 426 |
| CviAII | CATG | 2 cut(s) | 158, 296 |
| CviJI | RGCY | 4 cut(s) | 125, 220, 320, 341 |
| CviKI_1 | RGCY | 4 cut(s) | 125, 220, 320, 341 |
| CviQI | GTAC | 2 cut(s) | 56, 426 |
| DdeI | CTNAG | 1 cut(s) | 434 |
| EcoT22I | ATGCAT | 1 cut(s) | 241 |
| FaeI | CATG | 2 cut(s) | 161, 299 |
| FatI | CATG | 2 cut(s) | 157, 295 |
| Fnu4HI | GCNGC | 1 cut(s) | 221 |
| FokI | GGATG | 1 cut(s) | 17 |
| Fsp4HI | GCNGC | 1 cut(s) | 221 |
| FspBI | CTAG | 2 cut(s) | 126, 321 |
| GluI | GCNGC | 1 cut(s) | 221 |
| Hin1II | CATG | 2 cut(s) | 161, 299 |
| HincII | GTYRAC | 1 cut(s) | 331 |
| HindII | GTYRAC | 1 cut(s) | 331 |
| HinfI | GANTC | 3 cut(s) | 16, 375, 491 |
| HpaI | GTTAAC | 1 cut(s) | 331 |
| HphI | GGTGA | 1 cut(s) | 401 |
| Hpy166II | GTNNAC | 1 cut(s) | 331 |
| Hpy8I | GTNNAC | 1 cut(s) | 331 |
| HpyCH4III | ACNGT | 1 cut(s) | 209 |
| HpyCH4IV | ACGT | 3 cut(s) | 39, 428, 447 |
| HpyCH4V | TGCA | 8 cut(s) | 77, 223, 239, 245, 367, 442, 458, 486 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 430, 439 |
| HpyF3I | CTNAG | 1 cut(s) | 434 |
| HpySE526I | ACGT | 3 cut(s) | 39, 428, 447 |
| Hsp92II | CATG | 2 cut(s) | 161, 299 |
| KspAI | GTTAAC | 1 cut(s) | 331 |
| LmnI | GCTCC | 1 cut(s) | 217 |
| LpnPI | CCDG | 2 cut(s) | 428, 489 |
| Lsp1109I | GCAGC | 1 cut(s) | 207 |
| LweI | GCATC | 1 cut(s) | 528 |
| MaeI | CTAG | 2 cut(s) | 126, 321 |
| MaeII | ACGT | 3 cut(s) | 39, 428, 447 |
| MaeIII | GTNAC | 1 cut(s) | 298 |
| MfeI | CAATTG | 1 cut(s) | 80 |
| MluCI | AATT | 2 cut(s) | 20, 80 |
| MlyI | GAGTC | 1 cut(s) | 10 |
| MnlI | CCTC | 5 cut(s) | 81, 132, 163, 472, 489 |
| Mph1103I | ATGCAT | 1 cut(s) | 241 |
| MseI | TTAA | 4 cut(s) | 162, 330, 510, 536 |
| MunI | CAATTG | 1 cut(s) | 80 |
| Mva1269I | GAATGC | 2 cut(s) | 79, 241 |
| MvnI | CGCG | 1 cut(s) | 190 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 430, 439 |
| NlaIII | CATG | 2 cut(s) | 161, 299 |
| NsiI | ATGCAT | 1 cut(s) | 241 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 187 |
| PctI | GAATGC | 2 cut(s) | 79, 241 |
| PfeI | GAWTC | 2 cut(s) | 375, 491 |
| Pfl23II | CGTACG | 1 cut(s) | 425 |
| PkrI | GCNGC | 1 cut(s) | 222 |
| PleI | GAGTC | 1 cut(s) | 10 |
| PpsI | GAGTC | 1 cut(s) | 10 |
| PshBI | ATTAAT | 1 cut(s) | 536 |
| PsiI | TTATAA | 1 cut(s) | 50 |
| Psp1406I | AACGTT | 1 cut(s) | 39 |
| PspLI | CGTACG | 1 cut(s) | 425 |
| RsaI | GTAC | 2 cut(s) | 57, 427 |
| RsaNI | GTAC | 2 cut(s) | 56, 426 |
| SaqAI | TTAA | 4 cut(s) | 162, 330, 510, 536 |
| SatI | GCNGC | 1 cut(s) | 221 |
| SchI | GAGTC | 1 cut(s) | 10 |
| SfaNI | GCATC | 1 cut(s) | 528 |
| Sse9I | AATT | 2 cut(s) | 20, 80 |
| SsiI | CCGC | 1 cut(s) | 412 |
| SspI | AATATT | 1 cut(s) | 506 |
| SspMI | CTAG | 2 cut(s) | 126, 321 |
| TaaI | ACNGT | 1 cut(s) | 209 |
| TaiI | ACGT | 3 cut(s) | 42, 431, 450 |
| TaqI | TCGA | 1 cut(s) | 494 |
| TasI | AATT | 2 cut(s) | 20, 80 |
| TfiI | GAWTC | 2 cut(s) | 375, 491 |
| Tru1I | TTAA | 4 cut(s) | 162, 330, 510, 536 |
| Tru9I | TTAA | 4 cut(s) | 162, 330, 510, 536 |
| TseI | GCWGC | 1 cut(s) | 220 |
| TspDTI | ATGAA | 3 cut(s) | 21, 86, 146 |
| VspI | ATTAAT | 1 cut(s) | 536 |
| XspI | CTAG | 2 cut(s) | 126, 321 |
| Zsp2I | ATGCAT | 1 cut(s) | 241 |