FvH4_5g36381
MYB Family

DDE superfamily endonuclease

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb5
OG0000468
Physical Location & Seq
Reverse (-)
26698844 .. 26701348
2505 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_5g36381.t1

Sequence Viewer

Length: 1215 bp
ATGGCTCGTTTAACTTTGTCTACAAAGCAGAAGCTACTTGTTATCGTGAATGAATTAATTGTCTTGCTTCGGGTTATTTTTGTTGTTTGTGCCGCTGGTTGTGCCTCTGGTTATGTTGATGTTTTCATTAGAACTCAAAAACGCATCAAAAGTCCATATTCTGCCCTCAGAGTTTATAGGCAATTATCATATATGTATAGCCTTGTCTATGAGAGTGATGTCATATGTATTGATAAGTTGAGAATGGATAGAGAGTCATTTCACAAATTGTGTCGAATTCTTTCTACCAAAGGACAACTACGAGGGACTAGGAATGTGTCAATAGAGGAGATGGTTGCAATGTTTTTAAACACTCTTGCTCACCACCATAAAAATCGTGTCATAAAATTTAATTTCCATAGATCTGGCCGAACTGTTAGCAAATATTTTCATGAGTGTCTTAAAGCAATAATTCGTTGCCAAAAAGATTTTTGGAAAACACCCGAACCAATACCAGAGGACTCAACGGATTATCGATGGACATGGTTCAAGAATTGCTTAGGAGCATTGGATGGAACATATATTAGGGTGAGTGTACCTGAGAAAGACAAACCGAGGTATAGGACAAGGAAAAATGAAATAGCAACAAATGTGTTGGGAGTTTGCTCTCTGGAATTGCAATTCATATATGTTTTGCCCGGGTGGGAGGGTTCAGCACATGACGGTCGAGTCCTTAGAGATGCTATTACTAGGAGAAACGGATTAAAAGTACCAAATAGTAATTATTATCTAGTTGATGGTGGCTACACTAATGGGAAAGGTTTCCTTGCACCATTTAGAGGACAACTCTATCATCTTAGTGAGTGGAGAGATGGACACCGACCCACAACAGCAAAAGAGTTTTTCAACATGAAACATGCAAGTGCTAGGAATGTCATTGAAAGGAGTTTTAAGTTGCTGAAAATGCGTTGGGCGATTCTAAGAAATCCATCTTTTTATGATATTATAACACAACGTCGCATAATTTCAGTGTGTTGCATGCTCCACAATTTTATAAGAAGAGAGATGTCGGTAGATCCAATTAAGCATGAGTATGATAGGCAACGAAGGAATGAAAATTTGGAGGACAATGACTACATTACTTCAATTGAGACATCCGATGAGTGGAGTGCTTGGAGAGAAAATCTTGCCAATGAAATGTTTAATACATGGAGAAGAACTAGGGAAGCTAGATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DDE_Tnp_4 Myb_DNA-bind_3

Protein Analysis

405

Amino Acids

47.71

Weight (kDa)

9.72

Isoelectric Point (pI)

39.14

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF8040 PF26138 64 - 151 1e-24 Domain of unknown function (DUF8040)
DDE_Tnp_1 PF01609 176 - 341 1.5e-08 Transposase DDE domain
DDE_Tnp_4 PF13359 183 - 343 1.4e-25 DDE superfamily endonuclease
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000468)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g04030 FvH4_2g09411 FvH4_3g15551 FvH4_3g36421 FvH4_4g11701 FvH4_5g36381 FvH4_6g09143 FvH4_6g09144 FvH4_6g21972
malus_domestica MD00G1096500.v1.1 MD00G1122500.v1.1 MD02G1090600.v1.1 MD02G1173300.v1.1 MD05G1202800.v1.1 MD14G1123600.v1.1
prunus_persica Prupe.1G083600_v2.0.a1 Prupe.1G245300_v2.0.a1 Prupe.5G002100_v2.0.a1 Prupe.6G061200_v2.0.a1
pyrus_communis pycom01g07060 pycom02g13920 pycom04g11780 pycom04g13480 pycom04g21940 pycom06g07950 pycom07g03740 pycom07g03980 pycom09g02010 pycom09g02020 pycom09g11510 pycom09g14260 pycom10g02500 pycom10g15690 pycom12g08730 pycom12g08740 pycom14g19840 pycom15g16780 pycom15g24940 pycom15g25660 pycom16g21630 pycom16g26320
rosa_chinensis RchiOBHm_Chr1g0330371 RchiOBHm_Chr1g0331991 RchiOBHm_Chr6g0300321
rosa_laevigata RLG00000013795
rosa_multiflora Rmu_sc0000060.1_g000010 Rmu_sc0000288.1_g000044 Rmu_sc0002219.1_g000002 Rmu_sc0003995.1_g000003
rosa_roxburghii Rroxscaffold_1G00059020 Rroxscaffold_2G00108450 Rroxscaffold_2G00112460 Rroxscaffold_5G00375700 Rroxscaffold_5G00381640 Rroxscaffold_7G00158590
rosa_rugosa Rorug01G0237300 Rorug01G0237400 Rorug01G0237500 Rorug02G0051900 Rorug03G0260600 Rorug03G0285800 Rorug04G0076800 Rorug04G0162600 Rorug07G0264500 Rorug07G0264500
rosa_samantha Rh2DG003500 Rh3CG244800 Rh4CG334200 Rh5AG318300 Rh5BG549000 Rh7AG126400 Rh7CG118500 Rh7CG154500 Rh7DG025400
rosa_wichuraiana Rw1G026390 Rw2G005400 Rw2G034490 Rw3G019530 Rw3G028000 Rw4G010490 Rw5G010830 Rw5G023340 Rw5G026580 Rw5G041150 Rw6G003010 Rw6G003290 Rw6G010630 Rw6G021220 Rw6G035650 Rw7G014310

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 986, 1034
AasI GACNNNNNNGTC 1 cut(s) 707
AccI GTMKAC 1 cut(s) 20
AciI CCGC 1 cut(s) 93
AclWI GGATC 1 cut(s) 1049
AcoI YGGCCR 1 cut(s) 406
AcsI RAATTY 3 cut(s) 276, 386, 1096
AfaI GTAC 2 cut(s) 576, 750
AfiI CCNNNNNNNGG 2 cut(s) 818, 1143
AgsI TTSAA 4 cut(s) 529, 886, 920, 1125
AjuI GAANNNNNNNTTGG 2 cut(s) 1082, 1114
AluBI AGCT 2 cut(s) 34, 1208
AluI AGCT 2 cut(s) 34, 1208
Alw26I GTCTC 1 cut(s) 1124
AlwI GGATC 1 cut(s) 1049
Ama87I CYCGRG 1 cut(s) 677
AoxI GGCC 1 cut(s) 406
ApoI RAATTY 3 cut(s) 276, 386, 1096
AseI ATTAAT 1 cut(s) 56
Asp700I GAANNNNTTC 2 cut(s) 280, 800
AsuC2I CCSGG 2 cut(s) 678, 679
AsuHPI GGTGA 2 cut(s) 353, 580
AvaI CYCGRG 1 cut(s) 677
BccI CCATC 6 cut(s) 325, 510, 545, 770, 845, 976
BcnI CCSGG 2 cut(s) 678, 679
BcoDI GTCTC 1 cut(s) 1124
BfaI CTAG 6 cut(s) 309, 729, 770, 906, 1200, 1209
BglII AGATCT 1 cut(s) 401
BisI GCNGC 1 cut(s) 93
BlsI GCNGC 1 cut(s) 94
Bme1390I CCNGG 2 cut(s) 678, 679
BmeT110I CYCGRG 1 cut(s) 677
BmrFI CCNGG 2 cut(s) 678, 679
BmsI GCATC 2 cut(s) 153, 709
BplI GAGNNNNNCTC 2 cut(s) 810, 842
Bpu10I CCTNAGC 1 cut(s) 538
BpuMI CCSGG 2 cut(s) 678, 679
Bsa29I ATCGAT 1 cut(s) 514
BsaJI CCNNGG 2 cut(s) 593, 677
Bsc4I CCNNNNNNNGG 2 cut(s) 818, 1143
Bse3DI GCAATG 1 cut(s) 345
BseCI ATCGAT 1 cut(s) 514
BseDI CCNNGG 2 cut(s) 593, 677
BseGI GGATG 2 cut(s) 556, 1133
BseLI CCNNNNNNNGG 2 cut(s) 818, 1143
BseMI GCAATG 1 cut(s) 345
BseMII CTCAG 2 cut(s) 181, 570
BseRI GAGGAG 1 cut(s) 341
Bsh1285I CGRYCG 1 cut(s) 706
BshFI GGCC 1 cut(s) 408
BshVI ATCGAT 1 cut(s) 514
BsiEI CGRYCG 1 cut(s) 706
BsiHKCI CYCGRG 1 cut(s) 677
BsiSI CCGG 1 cut(s) 678
BslFI GGGAC 1 cut(s) 319
BslI CCNNNNNNNGG 2 cut(s) 818, 1143
BsmAI GTCTC 1 cut(s) 1124
BsmFI GGGAC 1 cut(s) 319
BsnI GGCC 1 cut(s) 408
BsoBI CYCGRG 1 cut(s) 677
Bsp143I GATC 2 cut(s) 401, 1054
BspACI CCGC 1 cut(s) 93
BspANI GGCC 1 cut(s) 408
BspCNI CTCAG 2 cut(s) 180, 571
BspDI ATCGAT 1 cut(s) 514
BspHI TCATGA 1 cut(s) 430
BspPI GGATC 1 cut(s) 1049
BsrDI GCAATG 1 cut(s) 345
BssECI CCNNGG 2 cut(s) 593, 677
BssMI GATC 2 cut(s) 401, 1054
Bst4CI ACNGT 2 cut(s) 415, 704
Bst6I CTCTTC 1 cut(s) 1033
BstC8I GCNNGC 1 cut(s) 1019
BstDEI CTNAG 6 cut(s) 167, 538, 579, 713, 836, 959
BstF5I GGATG 2 cut(s) 556, 1133
BstKTI GATC 2 cut(s) 404, 1057
BstMAI GTCTC 1 cut(s) 1124
BstMBI GATC 2 cut(s) 401, 1054
BstMCI CGRYCG 1 cut(s) 706
BstMWI GCNNNNNNNGC 2 cut(s) 101, 943
BstNSI RCATGY 2 cut(s) 899, 1021
BstSCI CCNGG 2 cut(s) 676, 677
BstX2I RGATCY 2 cut(s) 401, 1054
BstXI CCANNNNNNTGG 1 cut(s) 404
BstYI RGATCY 2 cut(s) 401, 1054
Bsu15I ATCGAT 1 cut(s) 514
BsuRI GGCC 1 cut(s) 408
BsuTUI ATCGAT 1 cut(s) 514
BtsCI GGATG 2 cut(s) 556, 1133
BtsIMutI CAGTG 1 cut(s) 1014
Cac8I GCNNGC 1 cut(s) 1019
CciI TCATGA 1 cut(s) 430
Cfr9I CCCGGG 1 cut(s) 677
ClaI ATCGAT 1 cut(s) 514
Csp6I GTAC 2 cut(s) 575, 749
CviAII CATG 8 cut(s) 431, 522, 698, 889, 896, 1018, 1067, 1188
CviJI RGCY 6 cut(s) 5, 34, 201, 408, 783, 1208
CviKI_1 RGCY 6 cut(s) 5, 34, 201, 408, 783, 1208
CviQI GTAC 2 cut(s) 575, 749
DdeI CTNAG 6 cut(s) 167, 538, 579, 713, 836, 959
DpnI GATC 2 cut(s) 403, 1056
DpnII GATC 2 cut(s) 401, 1054
DraI TTTAAA 1 cut(s) 348
DrdI GACNNNNNNGTC 1 cut(s) 707
DseDI GACNNNNNNGTC 1 cut(s) 707
EaeI YGGCCR 1 cut(s) 406
Eam1104I CTCTTC 1 cut(s) 1033
EarI CTCTTC 1 cut(s) 1033
Eco88I CYCGRG 1 cut(s) 677
EcoRI GAATTC 1 cut(s) 276
FaeI CATG 8 cut(s) 434, 525, 701, 892, 899, 1021, 1070, 1191
FalI AAGNNNNNCTT 4 cut(s) 521, 553, 789, 821
FaqI GGGAC 1 cut(s) 319
FatI CATG 8 cut(s) 430, 521, 697, 888, 895, 1017, 1066, 1187
FauNDI CATATG 1 cut(s) 224
FblI GTMKAC 1 cut(s) 20
Fnu4HI GCNGC 1 cut(s) 93
FokI GGATG 2 cut(s) 563, 1120
Fsp4HI GCNGC 1 cut(s) 93
FspBI CTAG 6 cut(s) 309, 729, 770, 906, 1200, 1209
GluI GCNGC 1 cut(s) 93
HaeIII GGCC 1 cut(s) 408
HapII CCGG 1 cut(s) 678
Hin1II CATG 8 cut(s) 434, 525, 701, 892, 899, 1021, 1070, 1191
HinfI GANTC 4 cut(s) 254, 500, 708, 955
HpaII CCGG 1 cut(s) 678
HphI GGTGA 2 cut(s) 353, 580
Hpy166II GTNNAC 2 cut(s) 21, 575
Hpy188I TCNGA 2 cut(s) 170, 1138
Hpy188III TCNNGA 4 cut(s) 46, 431, 529, 650
Hpy8I GTNNAC 2 cut(s) 21, 575
Hpy99I CGWCG 1 cut(s) 999
HpyAV CCTTC 1 cut(s) 1080
HpyCH4III ACNGT 2 cut(s) 415, 704
HpyCH4IV ACGT 1 cut(s) 994
HpyCH4V TGCA 5 cut(s) 338, 658, 809, 899, 1017
HpyF10VI GCNNNNNNNGC 2 cut(s) 101, 943
HpyF3I CTNAG 6 cut(s) 167, 538, 579, 713, 836, 959
HpySE526I ACGT 1 cut(s) 994
Hsp92II CATG 8 cut(s) 434, 525, 701, 892, 899, 1021, 1070, 1191
Kzo9I GATC 2 cut(s) 401, 1054
LmnI GCTCC 2 cut(s) 542, 1026
LpnPI CCDG 7 cut(s) 81, 93, 390, 507, 591, 635, 691
LweI GCATC 2 cut(s) 153, 709
MaeI CTAG 6 cut(s) 309, 729, 770, 906, 1200, 1209
MaeII ACGT 1 cut(s) 994
MalI GATC 2 cut(s) 403, 1056
MboI GATC 2 cut(s) 401, 1054
MboII GAAGA 2 cut(s) 1050, 1206
MfeI CAATTG 1 cut(s) 1125
MflI RGATCY 2 cut(s) 401, 1054
MlyI GAGTC 3 cut(s) 263, 494, 717
MnlI CCTC 9 cut(s) 115, 176, 296, 319, 490, 588, 679, 812, 1096
MroXI GAANNNNTTC 2 cut(s) 280, 800
MseI TTAA 9 cut(s) 11, 56, 347, 390, 441, 743, 930, 1062, 1182
MslI CAYNNNNRTG 3 cut(s) 837, 900, 1071
MspA1I CMGCKG 1 cut(s) 95
MspI CCGG 1 cut(s) 678
MspR9I CCNGG 2 cut(s) 678, 679
MunI CAATTG 1 cut(s) 1125
MwoI GCNNNNNNNGC 2 cut(s) 101, 943
NciI CCSGG 2 cut(s) 678, 679
NdeI CATATG 1 cut(s) 224
NdeII GATC 2 cut(s) 401, 1054
NlaIII CATG 8 cut(s) 434, 525, 701, 892, 899, 1021, 1070, 1191
NspI RCATGY 2 cut(s) 899, 1021
PaeI GCATGC 1 cut(s) 1021
PagI TCATGA 1 cut(s) 430
PdmI GAANNNNTTC 2 cut(s) 280, 800
PfeI GAWTC 1 cut(s) 955
PkrI GCNGC 1 cut(s) 94
PleI GAGTC 3 cut(s) 262, 494, 716
PpsI GAGTC 3 cut(s) 262, 494, 716
PshBI ATTAAT 1 cut(s) 56
PsiI TTATAA 2 cut(s) 986, 1034
PsuI RGATCY 2 cut(s) 401, 1054
RsaI GTAC 2 cut(s) 576, 750
RsaNI GTAC 2 cut(s) 575, 749
RseI CAYNNNNRTG 3 cut(s) 837, 900, 1071
SaqAI TTAA 9 cut(s) 11, 56, 347, 390, 441, 743, 930, 1062, 1182
SatI GCNGC 1 cut(s) 93
Sau3AI GATC 2 cut(s) 401, 1054
SchI GAGTC 3 cut(s) 263, 494, 717
ScrFI CCNGG 2 cut(s) 678, 679
SetI ASST 6 cut(s) 36, 580, 599, 802, 997, 1210
SfaNI GCATC 2 cut(s) 153, 709
SmaI CCCGGG 1 cut(s) 679
SmiMI CAYNNNNRTG 3 cut(s) 837, 900, 1071
SphI GCATGC 1 cut(s) 1021
SsiI CCGC 1 cut(s) 93
SspI AATATT 1 cut(s) 425
SspMI CTAG 6 cut(s) 309, 729, 770, 906, 1200, 1209
StyD4I CCNGG 2 cut(s) 676, 677
TaaI ACNGT 2 cut(s) 415, 704
TaiI ACGT 1 cut(s) 997
TaqI TCGA 3 cut(s) 274, 514, 706
TauI GCSGC 1 cut(s) 95
TfiI GAWTC 1 cut(s) 955
Tru1I TTAA 9 cut(s) 11, 56, 347, 390, 441, 743, 930, 1062, 1182
Tru9I TTAA 9 cut(s) 11, 56, 347, 390, 441, 743, 930, 1062, 1182
TscAI CASTG 1 cut(s) 1014
TspDTI ATGAA 8 cut(s) 66, 115, 419, 630, 652, 905, 1107, 1188
TspGWI ACGGA 2 cut(s) 521, 753
TspMI CCCGGG 1 cut(s) 677
TspRI CASTG 1 cut(s) 1014
VspI ATTAAT 1 cut(s) 56
XapI RAATTY 3 cut(s) 276, 386, 1096
XceI RCATGY 2 cut(s) 899, 1021
XmaI CCCGGG 1 cut(s) 677
XmiI GTMKAC 1 cut(s) 20
XmnI GAANNNNTTC 2 cut(s) 280, 800
XspI CTAG 6 cut(s) 309, 729, 770, 906, 1200, 1209
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.