Prupe.5G002100_v2.0.a1
ERF Family

DDE superfamily endonuclease

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp05
OG0000468
Physical Location & Seq
Forward (+)
343847 .. 345019
1173 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.5G002100.1

Sequence Viewer

Length: 759 bp
ATGATTTTGCACGAAATAGGTGGATTGGCTCGGACAAGAAATGTTTCTATTGAAGAATCCATTGCTATATTCCTAAATATACTTTCTCACAACTTGAAGTTTAGGGTCATTGGTTTTGACTATTATCGTTCTAAGGAAACAATTAGTCGCCAATTTAATGGTGTGTTGCGTGCAATGATGAGAATAAGTCAAGAATATTTGGAACTTCAGTCATGTGCTATTGGTGTAATGGTGTCTACTGAGGATAGACCAAGATATAGAAATAGAAAGGGCGATATTTTCACCAATATTTTAGGAGGTTCTACTTCTGAAGCTCGTGTTTTGCGAGATGCTTTAGCGAGAGATAATTCGTTTCAATACTATCTTGTGGATGTGGGATATGCTAATGGAATTGGTTTTTTAGCAGCTTATCAAGGAACTAGATATGAATGGACTGGAAACAATTGGCCTCAAAATTATAAAGAGTTATTTAACTTGTGCCATTCAATTGCAAGGAATGTAATTGAAAGGATTATAAATGCATGCTTTGTGTTGCATAACTTCATTCGAAAAGGGCAACACAATGATCATGTGCTGCAAGATCAAGATTTGGGGTTTTTAGCTTCCGTGGATCATGAGATATCAAATCATTCCACATTAAAGGGTAATGCAAATAGGATCACAAGTGTCCATGTTACTGATCAATGGACTACTTTTCGGGAGACGTTAGCAATGCAGATGTTTCATGATTATCAAGCACAAGGCGCCACTAATTCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DDE_Tnp_4

Protein Analysis

253

Amino Acids

28.95

Weight (kDa)

7.81

Isoelectric Point (pI)

36.08

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000468)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g04030 FvH4_2g09411 FvH4_3g15551 FvH4_3g36421 FvH4_4g11701 FvH4_5g36381 FvH4_6g09143 FvH4_6g09144 FvH4_6g21972
malus_domestica MD00G1096500.v1.1 MD00G1122500.v1.1 MD02G1090600.v1.1 MD02G1173300.v1.1 MD05G1202800.v1.1 MD14G1123600.v1.1
prunus_persica Prupe.1G083600_v2.0.a1 Prupe.1G245300_v2.0.a1 Prupe.5G002100_v2.0.a1 Prupe.6G061200_v2.0.a1
pyrus_communis pycom01g07060 pycom02g13920 pycom04g11780 pycom04g13480 pycom04g21940 pycom06g07950 pycom07g03740 pycom07g03980 pycom09g02010 pycom09g02020 pycom09g11510 pycom09g14260 pycom10g02500 pycom10g15690 pycom12g08730 pycom12g08740 pycom14g19840 pycom15g16780 pycom15g24940 pycom15g25660 pycom16g21630 pycom16g26320
rosa_chinensis RchiOBHm_Chr1g0330371 RchiOBHm_Chr1g0331991 RchiOBHm_Chr6g0300321
rosa_laevigata RLG00000013795
rosa_multiflora Rmu_sc0000060.1_g000010 Rmu_sc0000288.1_g000044 Rmu_sc0002219.1_g000002 Rmu_sc0003995.1_g000003
rosa_roxburghii Rroxscaffold_1G00059020 Rroxscaffold_2G00108450 Rroxscaffold_2G00112460 Rroxscaffold_5G00375700 Rroxscaffold_5G00381640 Rroxscaffold_7G00158590
rosa_rugosa Rorug01G0237300 Rorug01G0237400 Rorug01G0237500 Rorug02G0051900 Rorug03G0260600 Rorug03G0285800 Rorug04G0076800 Rorug04G0162600 Rorug07G0264500 Rorug07G0264500
rosa_samantha Rh2DG003500 Rh3CG244800 Rh4CG334200 Rh5AG318300 Rh5BG549000 Rh7AG126400 Rh7CG118500 Rh7CG154500 Rh7DG025400
rosa_wichuraiana Rw1G026390 Rw2G005400 Rw2G034490 Rw3G019530 Rw3G028000 Rw4G010490 Rw5G010830 Rw5G023340 Rw5G026580 Rw5G041150 Rw6G003010 Rw6G003290 Rw6G010630 Rw6G021220 Rw6G035650 Rw7G014310

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 459, 515
AccB1I GGYRCC 1 cut(s) 743
AccI GTMKAC 1 cut(s) 236
AclWI GGATC 2 cut(s) 618, 665
AcuI CTGAAG 2 cut(s) 191, 330
AcyI GRCGYC 1 cut(s) 744
AgsI TTSAA 5 cut(s) 53, 97, 356, 486, 506
AluBI AGCT 3 cut(s) 314, 407, 602
AluI AGCT 3 cut(s) 314, 407, 602
Alw26I GTCTC 1 cut(s) 695
AlwI GGATC 2 cut(s) 618, 665
AoxI GGCC 1 cut(s) 446
ApeKI GCWGC 2 cut(s) 404, 574
Asp700I GAANNNNTTC 1 cut(s) 43
AspLEI GCGC 1 cut(s) 746
AsuHPI GGTGA 1 cut(s) 274
AsuII TTCGAA 1 cut(s) 547
BanI GGYRCC 1 cut(s) 743
BauI CACGAG 1 cut(s) 315
BbvI GCAGC 2 cut(s) 416, 561
BclI TGATCA 2 cut(s) 565, 679
BcoDI GTCTC 1 cut(s) 695
BfaI CTAG 1 cut(s) 420
BfoI RGCGCY 1 cut(s) 747
BisI GCNGC 2 cut(s) 405, 575
BlsI GCNGC 2 cut(s) 406, 576
BmiI GGNNCC 1 cut(s) 745
BmsI GCATC 1 cut(s) 319
Bpu14I TTCGAA 1 cut(s) 547
BsaHI GRCGYC 1 cut(s) 744
BsaJI CCNNGG 1 cut(s) 606
Bse1I ACTGG 1 cut(s) 439
Bse3DI GCAATG 3 cut(s) 60, 180, 717
BseDI CCNNGG 1 cut(s) 606
BseGI GGATG 1 cut(s) 376
BseMI GCAATG 3 cut(s) 60, 180, 717
BseMII CTCAG 1 cut(s) 231
BseNI ACTGG 1 cut(s) 439
BseXI GCAGC 2 cut(s) 416, 561
BshFI GGCC 1 cut(s) 448
BshNI GGYRCC 1 cut(s) 743
BsmAI GTCTC 1 cut(s) 695
BsmBI CGTCTC 1 cut(s) 695
BsnI GGCC 1 cut(s) 448
Bsp119I TTCGAA 1 cut(s) 547
Bsp143I GATC 5 cut(s) 565, 580, 610, 657, 679
BspANI GGCC 1 cut(s) 448
BspCNI CTCAG 1 cut(s) 232
BspHI TCATGA 3 cut(s) 613, 724, 755
BspLI GGNNCC 1 cut(s) 745
BspPI GGATC 2 cut(s) 618, 665
BspT104I TTCGAA 1 cut(s) 547
BspT107I GGYRCC 1 cut(s) 743
BsrDI GCAATG 3 cut(s) 60, 180, 717
BsrI ACTGG 1 cut(s) 439
BssECI CCNNGG 1 cut(s) 606
BssMI GATC 5 cut(s) 565, 580, 610, 657, 679
BssNI GRCGYC 1 cut(s) 744
BssSI CACGAG 1 cut(s) 315
Bst2BI CACGAG 1 cut(s) 315
BstACI GRCGYC 1 cut(s) 744
BstBI TTCGAA 1 cut(s) 547
BstC8I GCNNGC 2 cut(s) 171, 523
BstDEI CTNAG 2 cut(s) 132, 240
BstDSI CCRYGG 1 cut(s) 606
BstF5I GGATG 1 cut(s) 376
BstH2I RGCGCY 1 cut(s) 747
BstHHI GCGC 1 cut(s) 746
BstKTI GATC 5 cut(s) 568, 583, 613, 660, 682
BstMAI GTCTC 1 cut(s) 695
BstMBI GATC 5 cut(s) 565, 580, 610, 657, 679
BstMWI GCNNNNNNNGC 1 cut(s) 743
BstNSI RCATGY 1 cut(s) 525
BstV1I GCAGC 2 cut(s) 416, 561
BstXI CCANNNNNNTGG 1 cut(s) 158
BsuRI GGCC 1 cut(s) 448
BtgI CCRYGG 1 cut(s) 606
BtsCI GGATG 1 cut(s) 376
Cac8I GCNNGC 2 cut(s) 171, 523
CciI TCATGA 3 cut(s) 613, 724, 755
CfoI GCGC 1 cut(s) 746
CviAII CATG 7 cut(s) 213, 522, 569, 614, 671, 725, 756
CviJI RGCY 5 cut(s) 29, 314, 407, 448, 602
CviKI_1 RGCY 5 cut(s) 29, 314, 407, 448, 602
DdeI CTNAG 2 cut(s) 132, 240
DinI GGCGCC 1 cut(s) 745
DpnI GATC 5 cut(s) 567, 582, 612, 659, 681
DpnII GATC 5 cut(s) 565, 580, 610, 657, 679
Eco32I GATATC 1 cut(s) 621
Eco57I CTGAAG 2 cut(s) 191, 330
EcoRV GATATC 1 cut(s) 621
EcoT22I ATGCAT 1 cut(s) 523
EgeI GGCGCC 1 cut(s) 745
EheI GGCGCC 1 cut(s) 745
Esp3I CGTCTC 1 cut(s) 695
FaeI CATG 7 cut(s) 216, 525, 572, 617, 674, 728, 759
FatI CATG 7 cut(s) 212, 521, 568, 613, 670, 724, 755
FbaI TGATCA 2 cut(s) 565, 679
FblI GTMKAC 1 cut(s) 236
Fnu4HI GCNGC 2 cut(s) 405, 575
FokI GGATG 1 cut(s) 383
Fsp4HI GCNGC 2 cut(s) 405, 575
FspBI CTAG 1 cut(s) 420
GlaI GCGC 1 cut(s) 745
GluI GCNGC 2 cut(s) 405, 575
HaeII RGCGCY 1 cut(s) 747
HaeIII GGCC 1 cut(s) 448
HhaI GCGC 1 cut(s) 746
Hin1I GRCGYC 1 cut(s) 744
Hin1II CATG 7 cut(s) 216, 525, 572, 617, 674, 728, 759
Hin6I GCGC 1 cut(s) 744
HinP1I GCGC 1 cut(s) 744
HinfI GANTC 1 cut(s) 56
HphI GGTGA 1 cut(s) 274
Hpy166II GTNNAC 1 cut(s) 237
Hpy188I TCNGA 2 cut(s) 33, 310
Hpy188III TCNNGA 6 cut(s) 191, 584, 614, 698, 725, 756
Hpy8I GTNNAC 1 cut(s) 237
HpyCH4IV ACGT 1 cut(s) 704
HpyCH4V TGCA 8 cut(s) 10, 173, 491, 521, 535, 577, 650, 715
HpyF10VI GCNNNNNNNGC 1 cut(s) 743
HpyF3I CTNAG 2 cut(s) 132, 240
HpySE526I ACGT 1 cut(s) 704
Hsp92I GRCGYC 1 cut(s) 744
Hsp92II CATG 7 cut(s) 216, 525, 572, 617, 674, 728, 759
HspAI GCGC 1 cut(s) 744
KasI GGCGCC 1 cut(s) 743
Ksp22I TGATCA 2 cut(s) 565, 679
Kzo9I GATC 5 cut(s) 565, 580, 610, 657, 679
LpnPI CCDG 1 cut(s) 420
Lsp1109I GCAGC 2 cut(s) 416, 561
LweI GCATC 1 cut(s) 319
MaeI CTAG 1 cut(s) 420
MaeII ACGT 1 cut(s) 704
MaeIII GTNAC 1 cut(s) 673
MalI GATC 5 cut(s) 567, 582, 612, 659, 681
MboI GATC 5 cut(s) 565, 580, 610, 657, 679
MboII GAAGA 1 cut(s) 65
MfeI CAATTG 2 cut(s) 442, 486
MluCI AATT 9 cut(s) 141, 152, 346, 390, 442, 454, 486, 501, 751
Mly113I GGCGCC 1 cut(s) 744
MnlI CCTC 3 cut(s) 235, 290, 459
Mph1103I ATGCAT 1 cut(s) 523
MroXI GAANNNNTTC 1 cut(s) 43
MseI TTAA 3 cut(s) 156, 471, 638
MunI CAATTG 2 cut(s) 442, 486
MwoI GCNNNNNNNGC 1 cut(s) 743
NarI GGCGCC 1 cut(s) 744
NdeII GATC 5 cut(s) 565, 580, 610, 657, 679
NlaIII CATG 7 cut(s) 216, 525, 572, 617, 674, 728, 759
NlaIV GGNNCC 1 cut(s) 745
NsiI ATGCAT 1 cut(s) 523
NspI RCATGY 1 cut(s) 525
NspV TTCGAA 1 cut(s) 547
PaeI GCATGC 1 cut(s) 525
PagI TCATGA 3 cut(s) 613, 724, 755
PcsI WCGNNNNNNNCGW 1 cut(s) 322
PdmI GAANNNNTTC 1 cut(s) 43
PfeI GAWTC 1 cut(s) 56
PkrI GCNGC 2 cut(s) 406, 576
PluTI GGCGCC 1 cut(s) 747
PsiI TTATAA 2 cut(s) 459, 515
PspN4I GGNNCC 1 cut(s) 745
SaqAI TTAA 3 cut(s) 156, 471, 638
SatI GCNGC 2 cut(s) 405, 575
Sau3AI GATC 5 cut(s) 565, 580, 610, 657, 679
SetI ASST 6 cut(s) 22, 301, 316, 409, 604, 707
SfaNI GCATC 1 cut(s) 319
SfoI GGCGCC 1 cut(s) 745
SfuI TTCGAA 1 cut(s) 547
SphI GCATGC 1 cut(s) 525
Sse9I AATT 9 cut(s) 141, 152, 346, 390, 442, 454, 486, 501, 751
SspDI GGCGCC 1 cut(s) 743
SspI AATATT 2 cut(s) 197, 289
SspMI CTAG 1 cut(s) 420
TaiI ACGT 1 cut(s) 707
TaqI TCGA 1 cut(s) 547
TasI AATT 9 cut(s) 141, 152, 346, 390, 442, 454, 486, 501, 751
TfiI GAWTC 1 cut(s) 56
Tru1I TTAA 3 cut(s) 156, 471, 638
Tru9I TTAA 3 cut(s) 156, 471, 638
TseI GCWGC 2 cut(s) 404, 574
TspDTI ATGAA 4 cut(s) 441, 532, 713, 744
TspGWI ACGGA 1 cut(s) 595
XceI RCATGY 1 cut(s) 525
XmiI GTMKAC 1 cut(s) 236
XmnI GAANNNNTTC 1 cut(s) 43
XspI CTAG 1 cut(s) 420
Zsp2I ATGCAT 1 cut(s) 523
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.