Rroxscaffold_2G00112460
ERF Family

DDE superfamily endonuclease

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0000468
Physical Location & Seq
Reverse (-)
37636324 .. 37637344
1021 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00112460.1

Sequence Viewer

Length: 459 bp
ATGGATAGACGAGAGAATACTAAATGCATTGCAATGGAGTCTCGGTTGTTGTTATTGTTTGGTGGGGCGGGGAATTTTAGAAAGAGAGAATCAAAGAGGATAATAAATATCCAAGGTATGGCTGTAATGAGTGTTGGTGATATTATAATGAGGTTAAAACGAAAGCGTGCCATAGAAGAAGAGGAAAATAAAAAGAGAATGAAAATTATTTTTGGTGCTACCGTATCCGTGATTGCTTTAATAATAGAGTGGTATCATAAGACATTTCTTGTTAAAGAGCCTTCACGTGATTGGGATCAAGAAAGACGGTCTTACTTAAATCGTTTGTACGATGGAAGAGAGGTAGATTGTATTGAACAACTACGAGTCAGCAAGACCGCATTTAGGAAGTTATGTGAGATTTTACATGGAATAGGTGGGCTAGTTCGTACAAGAAATGTTCCTATTGAAGAATTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DDE_Tnp_4

Protein Analysis

152

Amino Acids

17.85

Weight (kDa)

9.85

Isoelectric Point (pI)

71.9

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF8040 PF26138 102 - 151 2.3e-07 Domain of unknown function (DUF8040)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000468)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g04030 FvH4_2g09411 FvH4_3g15551 FvH4_3g36421 FvH4_4g11701 FvH4_5g36381 FvH4_6g09143 FvH4_6g09144 FvH4_6g21972
malus_domestica MD00G1096500.v1.1 MD00G1122500.v1.1 MD02G1090600.v1.1 MD02G1173300.v1.1 MD05G1202800.v1.1 MD14G1123600.v1.1
prunus_persica Prupe.1G083600_v2.0.a1 Prupe.1G245300_v2.0.a1 Prupe.5G002100_v2.0.a1 Prupe.6G061200_v2.0.a1
pyrus_communis pycom01g07060 pycom02g13920 pycom04g11780 pycom04g13480 pycom04g21940 pycom06g07950 pycom07g03740 pycom07g03980 pycom09g02010 pycom09g02020 pycom09g11510 pycom09g14260 pycom10g02500 pycom10g15690 pycom12g08730 pycom12g08740 pycom14g19840 pycom15g16780 pycom15g24940 pycom15g25660 pycom16g21630 pycom16g26320
rosa_chinensis RchiOBHm_Chr1g0330371 RchiOBHm_Chr1g0331991 RchiOBHm_Chr6g0300321
rosa_laevigata RLG00000013795
rosa_multiflora Rmu_sc0000060.1_g000010 Rmu_sc0000288.1_g000044 Rmu_sc0002219.1_g000002 Rmu_sc0003995.1_g000003
rosa_roxburghii Rroxscaffold_1G00059020 Rroxscaffold_2G00108450 Rroxscaffold_2G00112460 Rroxscaffold_5G00375700 Rroxscaffold_5G00381640 Rroxscaffold_7G00158590
rosa_rugosa Rorug01G0237300 Rorug01G0237400 Rorug01G0237500 Rorug02G0051900 Rorug03G0260600 Rorug03G0285800 Rorug04G0076800 Rorug04G0162600 Rorug07G0264500 Rorug07G0264500
rosa_samantha Rh2DG003500 Rh3CG244800 Rh4CG334200 Rh5AG318300 Rh5BG549000 Rh7AG126400 Rh7CG118500 Rh7CG154500 Rh7DG025400
rosa_wichuraiana Rw1G026390 Rw2G005400 Rw2G034490 Rw3G019530 Rw3G028000 Rw4G010490 Rw5G010830 Rw5G023340 Rw5G026580 Rw5G041150 Rw6G003010 Rw6G003290 Rw6G010630 Rw6G021220 Rw6G035650 Rw7G014310

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 146
AccB7I CCANNNNNTGG 1 cut(s) 118
AciI CCGC 2 cut(s) 68, 378
AclWI GGATC 1 cut(s) 303
AcsI RAATTY 1 cut(s) 73
AcvI CACGTG 1 cut(s) 287
AfaI GTAC 2 cut(s) 329, 430
AfiI CCNNNNNNNGG 2 cut(s) 118, 384
AgsI TTSAA 2 cut(s) 356, 449
Alw26I GTCTC 1 cut(s) 45
AlwI GGATC 1 cut(s) 303
ApoI RAATTY 1 cut(s) 73
AsuHPI GGTGA 1 cut(s) 149
BbrPI CACGTG 1 cut(s) 287
BccI CCATC 1 cut(s) 326
BciVI GTATCC 1 cut(s) 235
BcoDI GTCTC 1 cut(s) 45
BfaI CTAG 1 cut(s) 422
BfuI GTATCC 1 cut(s) 235
BsaAI YACGTR 1 cut(s) 287
BsaBI GATNNNNATC 1 cut(s) 294
BsaJI CCNNGG 1 cut(s) 112
BsaXI ACNNNNNCTCC 2 cut(s) 29, 59
Bsc4I CCNNNNNNNGG 2 cut(s) 118, 384
Bse3DI GCAATG 2 cut(s) 27, 39
Bse8I GATNNNNATC 1 cut(s) 294
BseDI CCNNGG 1 cut(s) 112
BseJI GATNNNNATC 1 cut(s) 294
BseLI CCNNNNNNNGG 2 cut(s) 118, 384
BseMI GCAATG 2 cut(s) 27, 39
BslI CCNNNNNNNGG 2 cut(s) 118, 384
BsmAI GTCTC 1 cut(s) 45
Bsp143I GATC 1 cut(s) 295
BspACI CCGC 2 cut(s) 68, 378
BspPI GGATC 1 cut(s) 303
BsrDI GCAATG 2 cut(s) 27, 39
BssECI CCNNGG 1 cut(s) 112
BssMI GATC 1 cut(s) 295
BssT1I CCWWGG 1 cut(s) 112
Bst4CI ACNGT 2 cut(s) 223, 309
Bst6I CTCTTC 2 cut(s) 174, 331
BstBAI YACGTR 1 cut(s) 287
BstC8I GCNNGC 1 cut(s) 168
BstKTI GATC 1 cut(s) 298
BstMAI GTCTC 1 cut(s) 45
BstMBI GATC 1 cut(s) 295
BsuI GTATCC 1 cut(s) 235
Cac8I GCNNGC 1 cut(s) 168
Csp6I GTAC 2 cut(s) 328, 429
CviAII CATG 1 cut(s) 407
CviJI RGCY 3 cut(s) 122, 280, 421
CviKI_1 RGCY 3 cut(s) 122, 280, 421
CviQI GTAC 2 cut(s) 328, 429
DpnI GATC 1 cut(s) 297
DpnII GATC 1 cut(s) 295
Eam1104I CTCTTC 2 cut(s) 174, 331
EarI CTCTTC 2 cut(s) 174, 331
Eco130I CCWWGG 1 cut(s) 112
Eco72I CACGTG 1 cut(s) 287
EcoT14I CCWWGG 1 cut(s) 112
EcoT22I ATGCAT 1 cut(s) 29
ErhI CCWWGG 1 cut(s) 112
FaeI CATG 1 cut(s) 410
FaiI YATR 6 cut(s) 119, 146, 173, 258, 394, 408
FalI AAGNNNNNCTT 2 cut(s) 295, 327
FatI CATG 1 cut(s) 406
FauI CCCGC 1 cut(s) 61
FspBI CTAG 1 cut(s) 422
Hin1II CATG 1 cut(s) 410
HinfI GANTC 3 cut(s) 38, 89, 366
HphI GGTGA 1 cut(s) 149
Hpy188III TCNNGA 1 cut(s) 299
HpyAV CCTTC 1 cut(s) 291
HpyCH4III ACNGT 2 cut(s) 223, 309
HpyCH4IV ACGT 1 cut(s) 286
HpyCH4V TGCA 2 cut(s) 27, 32
HpySE526I ACGT 1 cut(s) 286
Hsp92II CATG 1 cut(s) 410
Kzo9I GATC 1 cut(s) 295
MaeI CTAG 1 cut(s) 422
MaeII ACGT 1 cut(s) 286
MalI GATC 1 cut(s) 297
MboI GATC 1 cut(s) 295
MboII GAAGA 3 cut(s) 188, 191, 348
MluCI AATT 3 cut(s) 73, 204, 452
MlyI GAGTC 2 cut(s) 47, 375
MnlI CCTC 4 cut(s) 90, 144, 175, 334
Mph1103I ATGCAT 1 cut(s) 29
MseI TTAA 4 cut(s) 155, 239, 273, 317
MslI CAYNNNNRTG 1 cut(s) 32
NdeII GATC 1 cut(s) 295
NlaIII CATG 1 cut(s) 410
NsiI ATGCAT 1 cut(s) 29
PfeI GAWTC 1 cut(s) 89
PflMI CCANNNNNTGG 1 cut(s) 118
PleI GAGTC 2 cut(s) 46, 374
PmaCI CACGTG 1 cut(s) 287
PmlI CACGTG 1 cut(s) 287
PpsI GAGTC 2 cut(s) 46, 374
Ppu21I YACGTR 1 cut(s) 287
PsiI TTATAA 1 cut(s) 146
PspCI CACGTG 1 cut(s) 287
RsaI GTAC 2 cut(s) 329, 430
RsaNI GTAC 2 cut(s) 328, 429
RseI CAYNNNNRTG 1 cut(s) 32
SaqAI TTAA 4 cut(s) 155, 239, 273, 317
Sau3AI GATC 1 cut(s) 295
SchI GAGTC 2 cut(s) 47, 375
SetI ASST 5 cut(s) 118, 155, 289, 345, 418
SmiMI CAYNNNNRTG 1 cut(s) 32
Sse9I AATT 3 cut(s) 73, 204, 452
SsiI CCGC 2 cut(s) 68, 378
SspMI CTAG 1 cut(s) 422
StyI CCWWGG 1 cut(s) 112
TaaI ACNGT 2 cut(s) 223, 309
TaiI ACGT 1 cut(s) 289
TasI AATT 3 cut(s) 73, 204, 452
TfiI GAWTC 1 cut(s) 89
Tru1I TTAA 4 cut(s) 155, 239, 273, 317
Tru9I TTAA 4 cut(s) 155, 239, 273, 317
TspDTI ATGAA 1 cut(s) 215
TspGWI ACGGA 1 cut(s) 217
Van91I CCANNNNNTGG 1 cut(s) 118
XapI RAATTY 1 cut(s) 73
XspI CTAG 1 cut(s) 422
Zsp2I ATGCAT 1 cut(s) 29
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.