Rw6G010630
MYB Family

DDE superfamily endonuclease

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr6
OG0000468
Physical Location & Seq
Forward (+)
18385746 .. 18386631
886 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw6G010630.1

Sequence Viewer

Length: 681 bp
ATGGCTCGTCTAAGTTTGTCCACAAAGAGAAGACTACTTGTCACCATAAATGCATTGCTTGCCTACCTTCGAGTACTATTTGCTGTATGTGCTGCAATCTATAAACAAGTAGAGTACTTGTATACACTAGTTTATTGGAGTGATGCTATATGTATCGACCAACTACGAATGGATAGACAATCATTTCATAAGTTGTGTCGAATTCTCATCAATAAAGGCCAATTAAGACTATCCCGAAATGTGTCTATAGAGGAGATGGTAGCAATGTTCTTAAATATTCTTGCACACCACAAGAAGAATCGTAGCATAGCCTTGTATTTTACTAGGTCAGGGCGAACTGTTAGTAAATACTTTCATGAGTGTTTGAAAGCCATGATTCGATGCCAAAAAGACTTCTGGAAAACACTTGAACCTGTACTTGAGGACTCAACAGACAATAGGTGGAAATGGTTTAAGAATTGTGTAGGATCATTAGAAGGTACACATATTAGGGTGAAAATAGCAACCAATGTTTTAGGGGTTTGCTCACAAGACTTGATGTTTATATATGTTTTACCGGGGTGGGAGGGTTCTGCACATGATGCTCGTGTTTTTAGAGATGCTGTGAGTAGGAGAAATGGATTAAAAGTTCCTAATGGTAATTTCGAAACCAAAATTTTAACTCTTTACATTTTTCATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DDE_Tnp_4 Myb_DNA-bind_3

Protein Analysis

226

Amino Acids

26.37

Weight (kDa)

9.77

Isoelectric Point (pI)

44.47

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF8040 PF26138 43 - 126 1.6e-24 Domain of unknown function (DUF8040)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000468)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g04030 FvH4_2g09411 FvH4_3g15551 FvH4_3g36421 FvH4_4g11701 FvH4_5g36381 FvH4_6g09143 FvH4_6g09144 FvH4_6g21972
malus_domestica MD00G1096500.v1.1 MD00G1122500.v1.1 MD02G1090600.v1.1 MD02G1173300.v1.1 MD05G1202800.v1.1 MD14G1123600.v1.1
prunus_persica Prupe.1G083600_v2.0.a1 Prupe.1G245300_v2.0.a1 Prupe.5G002100_v2.0.a1 Prupe.6G061200_v2.0.a1
pyrus_communis pycom01g07060 pycom02g13920 pycom04g11780 pycom04g13480 pycom04g21940 pycom06g07950 pycom07g03740 pycom07g03980 pycom09g02010 pycom09g02020 pycom09g11510 pycom09g14260 pycom10g02500 pycom10g15690 pycom12g08730 pycom12g08740 pycom14g19840 pycom15g16780 pycom15g24940 pycom15g25660 pycom16g21630 pycom16g26320
rosa_chinensis RchiOBHm_Chr1g0330371 RchiOBHm_Chr1g0331991 RchiOBHm_Chr6g0300321
rosa_laevigata RLG00000013795
rosa_multiflora Rmu_sc0000060.1_g000010 Rmu_sc0000288.1_g000044 Rmu_sc0002219.1_g000002 Rmu_sc0003995.1_g000003
rosa_roxburghii Rroxscaffold_1G00059020 Rroxscaffold_2G00108450 Rroxscaffold_2G00112460 Rroxscaffold_5G00375700 Rroxscaffold_5G00381640 Rroxscaffold_7G00158590
rosa_rugosa Rorug01G0237300 Rorug01G0237400 Rorug01G0237500 Rorug02G0051900 Rorug03G0260600 Rorug03G0285800 Rorug04G0076800 Rorug04G0162600 Rorug07G0264500 Rorug07G0264500
rosa_samantha Rh2DG003500 Rh3CG244800 Rh4CG334200 Rh5AG318300 Rh5BG549000 Rh7AG126400 Rh7CG118500 Rh7CG154500 Rh7DG025400
rosa_wichuraiana Rw1G026390 Rw2G005400 Rw2G034490 Rw3G019530 Rw3G028000 Rw4G010490 Rw5G010830 Rw5G023340 Rw5G026580 Rw5G041150 Rw6G003010 Rw6G003290 Rw6G010630 Rw6G021220 Rw6G035650 Rw7G014310

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 122
AclWI GGATC 1 cut(s) 475
AcsI RAATTY 2 cut(s) 201, 654
AfaI GTAC 4 cut(s) 75, 116, 417, 481
AgsI TTSAA 2 cut(s) 367, 410
AhdI GACNNNNNGTC 1 cut(s) 38
AhlI ACTAGT 1 cut(s) 127
AloI GAACNNNNNNTCC 2 cut(s) 612, 644
AlwI GGATC 1 cut(s) 475
AoxI GGCC 1 cut(s) 217
ApeKI GCWGC 1 cut(s) 92
ApoI RAATTY 2 cut(s) 201, 654
AsuC2I CCSGG 1 cut(s) 558
AsuHPI GGTGA 2 cut(s) 34, 505
AsuII TTCGAA 1 cut(s) 645
BauI CACGAG 1 cut(s) 585
BbsI GAAGAC 1 cut(s) 37
BbvI GCAGC 1 cut(s) 79
BccI CCATC 1 cut(s) 250
BcnI CCSGG 1 cut(s) 558
BcuI ACTAGT 1 cut(s) 127
BfaI CTAG 2 cut(s) 128, 324
BfmI CTRYAG 1 cut(s) 246
BisI GCNGC 1 cut(s) 93
BlsI GCNGC 1 cut(s) 94
BmcAI AGTACT 2 cut(s) 75, 116
Bme1390I CCNGG 1 cut(s) 558
BmeRI GACNNNNNGTC 1 cut(s) 38
BmrFI CCNGG 1 cut(s) 558
BmsI GCATC 4 cut(s) 133, 371, 571, 589
BpiI GAAGAC 1 cut(s) 37
Bpu14I TTCGAA 1 cut(s) 645
BpuEI CTTGAG 1 cut(s) 440
BpuMI CCSGG 1 cut(s) 558
BsaJI CCNNGG 1 cut(s) 557
Bse3DI GCAATG 2 cut(s) 53, 270
BseDI CCNNGG 1 cut(s) 557
BseMI GCAATG 2 cut(s) 53, 270
BseRI GAGGAG 1 cut(s) 266
BseXI GCAGC 1 cut(s) 79
BsgI GTGCAG 1 cut(s) 558
BshFI GGCC 1 cut(s) 219
BsiSI CCGG 1 cut(s) 557
BsnI GGCC 1 cut(s) 219
Bsp119I TTCGAA 1 cut(s) 645
Bsp143I GATC 1 cut(s) 467
BspANI GGCC 1 cut(s) 219
BspHI TCATGA 1 cut(s) 355
BspPI GGATC 1 cut(s) 475
BspT104I TTCGAA 1 cut(s) 645
BsrDI GCAATG 2 cut(s) 53, 270
BssECI CCNNGG 1 cut(s) 557
BssMI GATC 1 cut(s) 467
BssNAI GTATAC 1 cut(s) 123
BssSI CACGAG 1 cut(s) 585
Bst1107I GTATAC 1 cut(s) 123
Bst2BI CACGAG 1 cut(s) 585
Bst4CI ACNGT 1 cut(s) 340
BstAPI GCANNNNNTGC 2 cut(s) 59, 581
BstBI TTCGAA 1 cut(s) 645
BstC8I GCNNGC 1 cut(s) 60
BstDEI CTNAG 1 cut(s) 11
BstKTI GATC 1 cut(s) 470
BstMBI GATC 1 cut(s) 467
BstMWI GCNNNNNNNGC 3 cut(s) 59, 89, 581
BstSCI CCNGG 1 cut(s) 556
BstSFI CTRYAG 1 cut(s) 246
BstV1I GCAGC 1 cut(s) 79
BstV2I GAAGAC 1 cut(s) 37
BstZ17I GTATAC 1 cut(s) 123
BsuRI GGCC 1 cut(s) 219
Cac8I GCNNGC 1 cut(s) 60
CciI TCATGA 1 cut(s) 355
Csp6I GTAC 4 cut(s) 74, 115, 416, 480
CviAII CATG 3 cut(s) 356, 373, 578
CviJI RGCY 4 cut(s) 5, 219, 311, 371
CviKI_1 RGCY 4 cut(s) 5, 219, 311, 371
CviQI GTAC 4 cut(s) 74, 115, 416, 480
DdeI CTNAG 1 cut(s) 11
DpnI GATC 1 cut(s) 469
DpnII GATC 1 cut(s) 467
DriI GACNNNNNGTC 1 cut(s) 38
Eam1105I GACNNNNNGTC 1 cut(s) 38
EcoRI GAATTC 1 cut(s) 201
EcoT22I ATGCAT 1 cut(s) 55
FaeI CATG 3 cut(s) 359, 376, 581
FatI CATG 3 cut(s) 355, 372, 577
FblI GTMKAC 1 cut(s) 122
Fnu4HI GCNGC 1 cut(s) 93
Fsp4HI GCNGC 1 cut(s) 93
FspBI CTAG 2 cut(s) 128, 324
GluI GCNGC 1 cut(s) 93
HaeIII GGCC 1 cut(s) 219
HapII CCGG 1 cut(s) 557
Hin1II CATG 3 cut(s) 359, 376, 581
HinfI GANTC 3 cut(s) 298, 376, 425
HpaII CCGG 1 cut(s) 557
HphI GGTGA 2 cut(s) 34, 505
Hpy166II GTNNAC 3 cut(s) 21, 123, 482
Hpy188III TCNNGA 3 cut(s) 234, 356, 397
Hpy8I GTNNAC 3 cut(s) 21, 123, 482
HpyAV CCTTC 2 cut(s) 77, 470
HpyCH4III ACNGT 1 cut(s) 340
HpyCH4V TGCA 4 cut(s) 53, 95, 284, 575
HpyF10VI GCNNNNNNNGC 3 cut(s) 59, 89, 581
HpyF3I CTNAG 1 cut(s) 11
Hsp92II CATG 3 cut(s) 359, 376, 581
Kzo9I GATC 1 cut(s) 467
LpnPI CCDG 4 cut(s) 315, 382, 426, 570
Lsp1109I GCAGC 1 cut(s) 79
LweI GCATC 4 cut(s) 133, 371, 571, 589
MaeI CTAG 2 cut(s) 128, 324
MaeIII GTNAC 1 cut(s) 40
MalI GATC 1 cut(s) 469
MboI GATC 1 cut(s) 467
MboII GAAGA 2 cut(s) 42, 307
MluCI AATT 5 cut(s) 201, 221, 457, 640, 654
MlyI GAGTC 1 cut(s) 419
MnlI CCTC 3 cut(s) 244, 415, 559
Mph1103I ATGCAT 1 cut(s) 55
MseI TTAA 6 cut(s) 224, 272, 453, 623, 659, 679
MspI CCGG 1 cut(s) 557
MspR9I CCNGG 1 cut(s) 558
MwoI GCNNNNNNNGC 3 cut(s) 59, 89, 581
NciI CCSGG 1 cut(s) 558
NdeII GATC 1 cut(s) 467
NlaIII CATG 3 cut(s) 359, 376, 581
NmuCI GTSAC 1 cut(s) 40
NsiI ATGCAT 1 cut(s) 55
NspV TTCGAA 1 cut(s) 645
PagI TCATGA 1 cut(s) 355
PfeI GAWTC 2 cut(s) 298, 376
PkrI GCNGC 1 cut(s) 94
PleI GAGTC 1 cut(s) 419
PpsI GAGTC 1 cut(s) 419
RsaI GTAC 4 cut(s) 75, 116, 417, 481
RsaNI GTAC 4 cut(s) 74, 115, 416, 480
SaqAI TTAA 6 cut(s) 224, 272, 453, 623, 659, 679
SatI GCNGC 1 cut(s) 93
Sau3AI GATC 1 cut(s) 467
ScaI AGTACT 2 cut(s) 75, 116
SchI GAGTC 1 cut(s) 419
ScrFI CCNGG 1 cut(s) 558
SetI ASST 5 cut(s) 69, 329, 415, 443, 481
SfaNI GCATC 4 cut(s) 133, 371, 571, 589
SfcI CTRYAG 1 cut(s) 246
SfuI TTCGAA 1 cut(s) 645
SmlI CTYRAG 1 cut(s) 419
SmoI CTYRAG 1 cut(s) 419
SpeI ACTAGT 1 cut(s) 127
Sse9I AATT 5 cut(s) 201, 221, 457, 640, 654
SspI AATATT 1 cut(s) 277
SspMI CTAG 2 cut(s) 128, 324
StyD4I CCNGG 1 cut(s) 556
TaaI ACNGT 1 cut(s) 340
TaqI TCGA 5 cut(s) 70, 156, 199, 379, 645
TasI AATT 5 cut(s) 201, 221, 457, 640, 654
TatI WGTACW 3 cut(s) 73, 114, 415
TfiI GAWTC 2 cut(s) 298, 376
Tru1I TTAA 6 cut(s) 224, 272, 453, 623, 659, 679
Tru9I TTAA 6 cut(s) 224, 272, 453, 623, 659, 679
TseFI GTSAC 1 cut(s) 40
TseI GCWGC 1 cut(s) 92
Tsp45I GTSAC 1 cut(s) 40
TspDTI ATGAA 3 cut(s) 176, 344, 665
XapI RAATTY 2 cut(s) 201, 654
XmiI GTMKAC 1 cut(s) 122
XspI CTAG 2 cut(s) 128, 324
ZrmI AGTACT 2 cut(s) 75, 116
Zsp2I ATGCAT 1 cut(s) 55
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.