FvH4_4g11701
MYB Family

DDE superfamily endonuclease

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb4
OG0000468
Physical Location & Seq
Forward (+)
15426838 .. 15427982
1145 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_4g11701.t1

Sequence Viewer

Length: 972 bp
ATGGATAGAGAGTCATTCCATAAACTGTGTCAAATTCTTACAACTAAAGGACAACTACGAGGGACTAGGAATATGTCAGTAGAAGAGATGGTCGCAATGTTTTTAAACATTCTTGCACACCACCATAAAAATCGTGTCATAAAATTCGATTTTCATACGTTTGGTCGAACCGTTAGCAAATATTTTCATGAGTGTCTAAAAGCAATCATTCGATGTCAAAAAGACTTTTGGAAAACCCCTGAACCCATACATGAGAACTCAACGGATTATCGGTGGAAGTGGTTTAAGAACTACTTAGGAGCATTAGATGGAACATATATTAGAGTGCATGTACCCGAGAAGGACAAACCGAGGTATAGGACAAGAAAAAATGAAATAGCAACAAATGTGTTAGGCGTTTGCTCTCCAGAATTGCAATTCATATATGTTTTGCCGGGTTGGGAGGGTTCGGCACATGATGGTCGAGTCCTAAGAGATACTATAACTAGGAGAAACGGATTAAAAGTTCCAAATGGTAATTATTATTTAGTTGATGGTGGCTACACTAATGGGAAAGGTTTCCTTGCACCATTTAGAGGACAACGTTATCATCTTAATGAGTGGAGAGATGGACACCGACCGACATCAGCACAAGAGTTTTTCAACATGAAACATTTAAGTGCTAGGAATGTCATTGAAAGGTGTTTTGGACTACTGAAAATGCGTTGGGCAATTCTCAGAAGTCCATCTTTTTATGACATTATAACACAGCGTCGTATTATTTTGGTGTGTTGCATGCTCCATAATTTCAAAAGAAGAGAAATGTCGGTGGATCCAATCGAGCATTTATATGACAGGGAACATGTGAATGAAAATTTAGAGGCTAATGACTACATTACTACTGTTGAGTCATCAGACGAGTGGAGTGCATGGAGGAAAAACCTTGCCACTGAAATGTTTAATACATGGGAAGAAAGTAGAGTACCTAGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DDE_Tnp_4 Myb_DNA-bind_3

Protein Analysis

324

Amino Acids

38.42

Weight (kDa)

9.37

Isoelectric Point (pI)

44.64

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF8040 PF26138 1 - 70 8.7e-20 Domain of unknown function (DUF8040)
DDE_Tnp_1 PF01609 96 - 260 9.2e-10 Transposase DDE domain
DDE_Tnp_4 PF13359 102 - 262 2.7e-28 DDE superfamily endonuclease
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000468)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g04030 FvH4_2g09411 FvH4_3g15551 FvH4_3g36421 FvH4_4g11701 FvH4_5g36381 FvH4_6g09143 FvH4_6g09144 FvH4_6g21972
malus_domestica MD00G1096500.v1.1 MD00G1122500.v1.1 MD02G1090600.v1.1 MD02G1173300.v1.1 MD05G1202800.v1.1 MD14G1123600.v1.1
prunus_persica Prupe.1G083600_v2.0.a1 Prupe.1G245300_v2.0.a1 Prupe.5G002100_v2.0.a1 Prupe.6G061200_v2.0.a1
pyrus_communis pycom01g07060 pycom02g13920 pycom04g11780 pycom04g13480 pycom04g21940 pycom06g07950 pycom07g03740 pycom07g03980 pycom09g02010 pycom09g02020 pycom09g11510 pycom09g14260 pycom10g02500 pycom10g15690 pycom12g08730 pycom12g08740 pycom14g19840 pycom15g16780 pycom15g24940 pycom15g25660 pycom16g21630 pycom16g26320
rosa_chinensis RchiOBHm_Chr1g0330371 RchiOBHm_Chr1g0331991 RchiOBHm_Chr6g0300321
rosa_laevigata RLG00000013795
rosa_multiflora Rmu_sc0000060.1_g000010 Rmu_sc0000288.1_g000044 Rmu_sc0002219.1_g000002 Rmu_sc0003995.1_g000003
rosa_roxburghii Rroxscaffold_1G00059020 Rroxscaffold_2G00108450 Rroxscaffold_2G00112460 Rroxscaffold_5G00375700 Rroxscaffold_5G00381640 Rroxscaffold_7G00158590
rosa_rugosa Rorug01G0237300 Rorug01G0237400 Rorug01G0237500 Rorug02G0051900 Rorug03G0260600 Rorug03G0285800 Rorug04G0076800 Rorug04G0162600 Rorug07G0264500 Rorug07G0264500
rosa_samantha Rh2DG003500 Rh3CG244800 Rh4CG334200 Rh5AG318300 Rh5BG549000 Rh7AG126400 Rh7CG118500 Rh7CG154500 Rh7DG025400
rosa_wichuraiana Rw1G026390 Rw2G005400 Rw2G034490 Rw3G019530 Rw3G028000 Rw4G010490 Rw5G010830 Rw5G023340 Rw5G026580 Rw5G041150 Rw6G003010 Rw6G003290 Rw6G010630 Rw6G021220 Rw6G035650 Rw7G014310

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 743
AclI AACGTT 1 cut(s) 583
AclWI GGATC 2 cut(s) 806, 819
AcsI RAATTY 3 cut(s) 33, 143, 853
AfaI GTAC 2 cut(s) 333, 963
AfiI CCNNNNNNNGG 1 cut(s) 575
AflIII ACRYGT 1 cut(s) 841
AgsI TTSAA 3 cut(s) 643, 677, 790
AjuI GAANNNNNNNTTGG 2 cut(s) 669, 701
AloI GAACNNNNNNTCC 2 cut(s) 489, 521
AlwI GGATC 2 cut(s) 806, 819
Ama87I CYCGRG 1 cut(s) 335
ApoI RAATTY 3 cut(s) 33, 143, 853
Asp700I GAANNNNTTC 1 cut(s) 557
AsuC2I CCSGG 1 cut(s) 435
AvaI CYCGRG 1 cut(s) 335
BamHI GGATCC 1 cut(s) 811
BccI CCATC 6 cut(s) 82, 302, 452, 527, 602, 733
BcgI CGANNNNNNTGC 2 cut(s) 887, 921
BcnI CCSGG 1 cut(s) 435
BfaI CTAG 4 cut(s) 66, 486, 663, 966
Bme1390I CCNGG 1 cut(s) 435
BmeT110I CYCGRG 1 cut(s) 335
BmiI GGNNCC 1 cut(s) 813
BmrFI CCNGG 1 cut(s) 435
BpmI CTGGAG 1 cut(s) 390
BpuMI CCSGG 1 cut(s) 435
BsaJI CCNNGG 1 cut(s) 350
Bsc4I CCNNNNNNNGG 1 cut(s) 575
Bse3DI GCAATG 1 cut(s) 102
BseDI CCNNGG 1 cut(s) 350
BseLI CCNNNNNNNGG 1 cut(s) 575
BseMI GCAATG 1 cut(s) 102
BseMII CTCAG 1 cut(s) 730
Bsh1285I CGRYCG 1 cut(s) 620
BsiEI CGRYCG 1 cut(s) 620
BsiHKCI CYCGRG 1 cut(s) 335
BsiSI CCGG 1 cut(s) 434
BslFI GGGAC 1 cut(s) 76
BslI CCNNNNNNNGG 1 cut(s) 575
BsmFI GGGAC 1 cut(s) 76
BsoBI CYCGRG 1 cut(s) 335
Bsp143I GATC 1 cut(s) 811
BspCNI CTCAG 1 cut(s) 729
BspHI TCATGA 1 cut(s) 187
BspLI GGNNCC 1 cut(s) 813
BspPI GGATC 2 cut(s) 806, 819
BsrDI GCAATG 1 cut(s) 102
BssECI CCNNGG 1 cut(s) 350
BssMI GATC 1 cut(s) 811
Bst4CI ACNGT 3 cut(s) 27, 172, 883
Bst6I CTCTTC 2 cut(s) 78, 790
BstC8I GCNNGC 1 cut(s) 776
BstDEI CTNAG 3 cut(s) 295, 470, 716
BstKTI GATC 1 cut(s) 814
BstMBI GATC 1 cut(s) 811
BstMCI CGRYCG 1 cut(s) 620
BstNSI RCATGY 3 cut(s) 332, 778, 845
BstSCI CCNGG 1 cut(s) 433
BstX2I RGATCY 1 cut(s) 811
BstYI RGATCY 1 cut(s) 811
BtsIMutI CAGTG 1 cut(s) 927
Cac8I GCNNGC 1 cut(s) 776
CciI TCATGA 1 cut(s) 187
CseI GACGC 1 cut(s) 740
Csp6I GTAC 2 cut(s) 332, 962
CviAII CATG 9 cut(s) 188, 251, 329, 455, 646, 775, 842, 909, 945
CviJI RGCY 2 cut(s) 540, 863
CviKI_1 RGCY 2 cut(s) 540, 863
CviQI GTAC 2 cut(s) 332, 962
DdeI CTNAG 3 cut(s) 295, 470, 716
DpnI GATC 1 cut(s) 813
DpnII GATC 1 cut(s) 811
DraI TTTAAA 1 cut(s) 105
Eam1104I CTCTTC 2 cut(s) 78, 790
EarI CTCTTC 2 cut(s) 78, 790
Eco88I CYCGRG 1 cut(s) 335
FaeI CATG 9 cut(s) 191, 254, 332, 458, 649, 778, 845, 912, 948
FalI AAGNNNNNCTT 6 cut(s) 278, 310, 546, 578, 712, 744
FaqI GGGAC 1 cut(s) 76
FatI CATG 9 cut(s) 187, 250, 328, 454, 645, 774, 841, 908, 944
FspBI CTAG 4 cut(s) 66, 486, 663, 966
GsuI CTGGAG 1 cut(s) 390
HapII CCGG 1 cut(s) 434
HgaI GACGC 1 cut(s) 740
Hin1II CATG 9 cut(s) 191, 254, 332, 458, 649, 778, 845, 912, 948
HinfI GANTC 3 cut(s) 11, 465, 887
HpaII CCGG 1 cut(s) 434
Hpy188I TCNGA 2 cut(s) 719, 895
Hpy188III TCNNGA 2 cut(s) 188, 407
Hpy99I CGWCG 1 cut(s) 756
HpyAV CCTTC 1 cut(s) 334
HpyCH4III ACNGT 3 cut(s) 27, 172, 883
HpyCH4IV ACGT 2 cut(s) 158, 583
HpyCH4V TGCA 6 cut(s) 116, 328, 415, 566, 774, 908
HpyF3I CTNAG 3 cut(s) 295, 470, 716
HpySE526I ACGT 2 cut(s) 158, 583
Hsp92II CATG 9 cut(s) 191, 254, 332, 458, 649, 778, 845, 912, 948
Kzo9I GATC 1 cut(s) 811
LmnI GCTCC 2 cut(s) 299, 783
LpnPI CCDG 4 cut(s) 252, 420, 447, 820
MaeI CTAG 4 cut(s) 66, 486, 663, 966
MaeII ACGT 2 cut(s) 158, 583
MalI GATC 1 cut(s) 813
MboI GATC 1 cut(s) 811
MboII GAAGA 3 cut(s) 95, 807, 962
MflI RGATCY 1 cut(s) 811
MluCI AATT 8 cut(s) 33, 143, 410, 416, 517, 711, 784, 853
MlyI GAGTC 3 cut(s) 20, 474, 896
MnlI CCTC 6 cut(s) 53, 345, 436, 569, 853, 906
MroXI GAANNNNTTC 1 cut(s) 557
MseI TTAA 6 cut(s) 104, 285, 500, 594, 656, 939
MslI CAYNNNNRTG 5 cut(s) 594, 657, 828, 846, 932
MspI CCGG 1 cut(s) 434
MspR9I CCNGG 1 cut(s) 435
NciI CCSGG 1 cut(s) 435
NdeII GATC 1 cut(s) 811
NlaIII CATG 9 cut(s) 191, 254, 332, 458, 649, 778, 845, 912, 948
NlaIV GGNNCC 1 cut(s) 813
NspI RCATGY 3 cut(s) 332, 778, 845
PaeI GCATGC 1 cut(s) 778
PagI TCATGA 1 cut(s) 187
PciI ACATGT 1 cut(s) 841
PdmI GAANNNNTTC 1 cut(s) 557
PleI GAGTC 3 cut(s) 19, 473, 895
PpsI GAGTC 3 cut(s) 19, 473, 895
PscI ACATGT 1 cut(s) 841
PsiI TTATAA 1 cut(s) 743
Psp1406I AACGTT 1 cut(s) 583
PspN4I GGNNCC 1 cut(s) 813
PsuI RGATCY 1 cut(s) 811
RsaI GTAC 2 cut(s) 333, 963
RsaNI GTAC 2 cut(s) 332, 962
RseI CAYNNNNRTG 5 cut(s) 594, 657, 828, 846, 932
SaqAI TTAA 6 cut(s) 104, 285, 500, 594, 656, 939
Sau3AI GATC 1 cut(s) 811
SchI GAGTC 3 cut(s) 20, 474, 896
ScrFI CCNGG 1 cut(s) 435
SetI ASST 7 cut(s) 161, 356, 559, 586, 683, 924, 967
SmiMI CAYNNNNRTG 5 cut(s) 594, 657, 828, 846, 932
SphI GCATGC 1 cut(s) 778
Sse9I AATT 8 cut(s) 33, 143, 410, 416, 517, 711, 784, 853
SspI AATATT 1 cut(s) 182
SspMI CTAG 4 cut(s) 66, 486, 663, 966
StyD4I CCNGG 1 cut(s) 433
TaaI ACNGT 3 cut(s) 27, 172, 883
TaiI ACGT 2 cut(s) 161, 586
TaqI TCGA 5 cut(s) 147, 166, 211, 463, 819
TaqII GACCGA 1 cut(s) 634
TasI AATT 8 cut(s) 33, 143, 410, 416, 517, 711, 784, 853
Tru1I TTAA 6 cut(s) 104, 285, 500, 594, 656, 939
Tru9I TTAA 6 cut(s) 104, 285, 500, 594, 656, 939
TscAI CASTG 1 cut(s) 934
TspDTI ATGAA 6 cut(s) 143, 176, 387, 409, 662, 864
TspGWI ACGGA 2 cut(s) 278, 510
TspRI CASTG 1 cut(s) 934
XapI RAATTY 3 cut(s) 33, 143, 853
XceI RCATGY 3 cut(s) 332, 778, 845
XmnI GAANNNNTTC 1 cut(s) 557
XspI CTAG 4 cut(s) 66, 486, 663, 966
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.