pycom04g11780

Ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr4
OG0000468
Physical Location & Seq
Reverse (-)
14701232 .. 14701711
480 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom04g11780.1

Sequence Viewer

Length: 480 bp
ATGGATGAATATGAGACTCAATTCTTTGTTCTTTTGAACGTTTGGATTATAATGGCACAAGTCTTTACTATGAATGCAAAATTGTTGAGGTATAGACAACAACAAAGGAGACAACGGGAAAGAGCTAGTTTAGAGCAGAGGACATTTGTTAGACTTCATGTTAGGAGAGAGGAAATAAATCGTATCACGCGATTGAGTGATACTAACTGTTTGTGGGAGCTACGAATGGATAGGAATGCATTTGCAGTTTTATGTGATTTACTACAAATTCGTGATGGGTTGGTAGATGATAGTCATGTTACAATAGAGGAGCAAGTAGCTACTTTTGTTACCATATTAGCCCACCACAATAAAAACAGGTCAATGCAAGTTAGATTCTTTAGGTCTGGTGAAACTATTAGTCGGTATATCCGCAGAGTATTGTGTGCGTTGCTCAATTTGCAAGACTTGTTGTTTGCAAAACCAACCCCTATCCCATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DDE_Tnp_4

Protein Analysis

160

Amino Acids

19.08

Weight (kDa)

9.79

Isoelectric Point (pI)

50.89

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF8040 PF26138 59 - 145 1.8e-23 Domain of unknown function (DUF8040)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000468)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g04030 FvH4_2g09411 FvH4_3g15551 FvH4_3g36421 FvH4_4g11701 FvH4_5g36381 FvH4_6g09143 FvH4_6g09144 FvH4_6g21972
malus_domestica MD00G1096500.v1.1 MD00G1122500.v1.1 MD02G1090600.v1.1 MD02G1173300.v1.1 MD05G1202800.v1.1 MD14G1123600.v1.1
prunus_persica Prupe.1G083600_v2.0.a1 Prupe.1G245300_v2.0.a1 Prupe.5G002100_v2.0.a1 Prupe.6G061200_v2.0.a1
pyrus_communis pycom01g07060 pycom02g13920 pycom04g11780 pycom04g13480 pycom04g21940 pycom06g07950 pycom07g03740 pycom07g03980 pycom09g02010 pycom09g02020 pycom09g11510 pycom09g14260 pycom10g02500 pycom10g15690 pycom12g08730 pycom12g08740 pycom14g19840 pycom15g16780 pycom15g24940 pycom15g25660 pycom16g21630 pycom16g26320
rosa_chinensis RchiOBHm_Chr1g0330371 RchiOBHm_Chr1g0331991 RchiOBHm_Chr6g0300321
rosa_laevigata RLG00000013795
rosa_multiflora Rmu_sc0000060.1_g000010 Rmu_sc0000288.1_g000044 Rmu_sc0002219.1_g000002 Rmu_sc0003995.1_g000003
rosa_roxburghii Rroxscaffold_1G00059020 Rroxscaffold_2G00108450 Rroxscaffold_2G00112460 Rroxscaffold_5G00375700 Rroxscaffold_5G00381640 Rroxscaffold_7G00158590
rosa_rugosa Rorug01G0237300 Rorug01G0237400 Rorug01G0237500 Rorug02G0051900 Rorug03G0260600 Rorug03G0285800 Rorug04G0076800 Rorug04G0162600 Rorug07G0264500 Rorug07G0264500
rosa_samantha Rh2DG003500 Rh3CG244800 Rh4CG334200 Rh5AG318300 Rh5BG549000 Rh7AG126400 Rh7CG118500 Rh7CG154500 Rh7DG025400
rosa_wichuraiana Rw1G026390 Rw2G005400 Rw2G034490 Rw3G019530 Rw3G028000 Rw4G010490 Rw5G010830 Rw5G023340 Rw5G026580 Rw5G041150 Rw6G003010 Rw6G003290 Rw6G010630 Rw6G021220 Rw6G035650 Rw7G014310

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 50
AccII CGCG 1 cut(s) 190
AciI CCGC 1 cut(s) 412
AclI AACGTT 1 cut(s) 39
AcsI RAATTY 1 cut(s) 267
AgsI TTSAA 1 cut(s) 37
AluBI AGCT 3 cut(s) 125, 220, 320
AluI AGCT 3 cut(s) 125, 220, 320
Alw26I GTCTC 2 cut(s) 8, 103
ApoI RAATTY 1 cut(s) 267
ArsI GACNNNNNNTTYG 2 cut(s) 437, 469
AsuHPI GGTGA 1 cut(s) 401
BccI CCATC 1 cut(s) 269
BcoDI GTCTC 2 cut(s) 8, 103
BfaI CTAG 1 cut(s) 126
BseGI GGATG 1 cut(s) 10
BseRI GAGGAG 1 cut(s) 323
Bsh1236I CGCG 1 cut(s) 190
BsmAI GTCTC 2 cut(s) 8, 103
BsmI GAATGC 2 cut(s) 79, 241
BspACI CCGC 1 cut(s) 412
BspFNI CGCG 1 cut(s) 190
Bst4CI ACNGT 1 cut(s) 209
BstF5I GGATG 1 cut(s) 10
BstFNI CGCG 1 cut(s) 190
BstMAI GTCTC 2 cut(s) 8, 103
BstMWI GCNNNNNNNGC 1 cut(s) 439
BstUI CGCG 1 cut(s) 190
BtsCI GGATG 1 cut(s) 10
CviAII CATG 2 cut(s) 158, 296
CviJI RGCY 4 cut(s) 125, 220, 320, 341
CviKI_1 RGCY 4 cut(s) 125, 220, 320, 341
EcoT22I ATGCAT 1 cut(s) 241
FaeI CATG 2 cut(s) 161, 299
FatI CATG 2 cut(s) 157, 295
FokI GGATG 1 cut(s) 17
FspBI CTAG 1 cut(s) 126
Hin1II CATG 2 cut(s) 161, 299
HinfI GANTC 2 cut(s) 16, 375
HphI GGTGA 1 cut(s) 401
Hpy188III TCNNGA 1 cut(s) 272
HpyCH4III ACNGT 1 cut(s) 209
HpyCH4IV ACGT 1 cut(s) 39
HpyCH4V TGCA 6 cut(s) 77, 239, 245, 367, 442, 458
HpyF10VI GCNNNNNNNGC 1 cut(s) 439
HpySE526I ACGT 1 cut(s) 39
Hsp92II CATG 2 cut(s) 161, 299
LmnI GCTCC 2 cut(s) 217, 310
LpnPI CCDG 2 cut(s) 343, 372
MaeI CTAG 1 cut(s) 126
MaeII ACGT 1 cut(s) 39
MaeIII GTNAC 2 cut(s) 298, 328
MluCI AATT 4 cut(s) 20, 80, 267, 436
MlyI GAGTC 1 cut(s) 10
MnlI CCTC 4 cut(s) 81, 132, 163, 301
Mph1103I ATGCAT 1 cut(s) 241
Mva1269I GAATGC 2 cut(s) 79, 241
MvnI CGCG 1 cut(s) 190
MwoI GCNNNNNNNGC 1 cut(s) 439
NlaIII CATG 2 cut(s) 161, 299
NsiI ATGCAT 1 cut(s) 241
PcsI WCGNNNNNNNCGW 1 cut(s) 187
PctI GAATGC 2 cut(s) 79, 241
PfeI GAWTC 1 cut(s) 375
PleI GAGTC 1 cut(s) 10
PpsI GAGTC 1 cut(s) 10
PsiI TTATAA 1 cut(s) 50
Psp1406I AACGTT 1 cut(s) 39
SchI GAGTC 1 cut(s) 10
SetI ASST 7 cut(s) 42, 92, 127, 222, 322, 362, 386
Sse9I AATT 4 cut(s) 20, 80, 267, 436
SsiI CCGC 1 cut(s) 412
SspMI CTAG 1 cut(s) 126
TaaI ACNGT 1 cut(s) 209
TaiI ACGT 1 cut(s) 42
TasI AATT 4 cut(s) 20, 80, 267, 436
TfiI GAWTC 1 cut(s) 375
TspDTI ATGAA 3 cut(s) 21, 86, 146
XapI RAATTY 1 cut(s) 267
XspI CTAG 1 cut(s) 126
Zsp2I ATGCAT 1 cut(s) 241
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.