MD00G1096500.v1.1
MYB Family

nuclease activity

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr00
OG0000468
Physical Location & Seq
Forward (+)
20140745 .. 20141254
510 bp
Loading structure...
UTR
Exon/CDS
Intron
MD00G1096500.v1.1.491

Sequence Viewer

Length: 378 bp
ATGGATAGAAGGACTTTTGGCATATTATGCGACTTACTTCGTCAAGATGGGAGGGTAAAAACTGATGGTTTGGTGTCTGTAGAGGAACAGGTGTGTATGACTTTACAAATATTAGCACATCATACTAAGAATCGTAGTGTTGGCGGTAGATTTTATAGGTCGGGAGAGACTATAAGTAGGTATTTCAATAGCGTATTGCAAGGAATTTTGCGATTACAAGGTATCCTACTAAAAGTCCCCCAGCCTGTGCCTATTGATTCTACAGATCCTAGAATTGCTTGGGAGCATTGGATGGAACACACATTGATGTGCATGTACCTGAAATTGACAAACCAAGATACCGAACAAGAAAGGGTCGAGTCGCAACTAATGTGTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DDE_Tnp_4 Myb_DNA-bind_3

Protein Analysis

126

Amino Acids

14.52

Weight (kDa)

6.89

Isoelectric Point (pI)

64.4

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF8040 PF26138 1 - 70 5.6e-19 Domain of unknown function (DUF8040)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000468)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g04030 FvH4_2g09411 FvH4_3g15551 FvH4_3g36421 FvH4_4g11701 FvH4_5g36381 FvH4_6g09143 FvH4_6g09144 FvH4_6g21972
malus_domestica MD00G1096500.v1.1 MD00G1122500.v1.1 MD02G1090600.v1.1 MD02G1173300.v1.1 MD05G1202800.v1.1 MD14G1123600.v1.1
prunus_persica Prupe.1G083600_v2.0.a1 Prupe.1G245300_v2.0.a1 Prupe.5G002100_v2.0.a1 Prupe.6G061200_v2.0.a1
pyrus_communis pycom01g07060 pycom02g13920 pycom04g11780 pycom04g13480 pycom04g21940 pycom06g07950 pycom07g03740 pycom07g03980 pycom09g02010 pycom09g02020 pycom09g11510 pycom09g14260 pycom10g02500 pycom10g15690 pycom12g08730 pycom12g08740 pycom14g19840 pycom15g16780 pycom15g24940 pycom15g25660 pycom16g21630 pycom16g26320
rosa_chinensis RchiOBHm_Chr1g0330371 RchiOBHm_Chr1g0331991 RchiOBHm_Chr6g0300321
rosa_laevigata RLG00000013795
rosa_multiflora Rmu_sc0000060.1_g000010 Rmu_sc0000288.1_g000044 Rmu_sc0002219.1_g000002 Rmu_sc0003995.1_g000003
rosa_roxburghii Rroxscaffold_1G00059020 Rroxscaffold_2G00108450 Rroxscaffold_2G00112460 Rroxscaffold_5G00375700 Rroxscaffold_5G00381640 Rroxscaffold_7G00158590
rosa_rugosa Rorug01G0237300 Rorug01G0237400 Rorug01G0237500 Rorug02G0051900 Rorug03G0260600 Rorug03G0285800 Rorug04G0076800 Rorug04G0162600 Rorug07G0264500 Rorug07G0264500
rosa_samantha Rh2DG003500 Rh3CG244800 Rh4CG334200 Rh5AG318300 Rh5BG549000 Rh7AG126400 Rh7CG118500 Rh7CG154500 Rh7DG025400
rosa_wichuraiana Rw1G026390 Rw2G005400 Rw2G034490 Rw3G019530 Rw3G028000 Rw4G010490 Rw5G010830 Rw5G023340 Rw5G026580 Rw5G041150 Rw6G003010 Rw6G003290 Rw6G010630 Rw6G021220 Rw6G035650 Rw7G014310

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 144
AclWI GGATC 1 cut(s) 260
AcsI RAATTY 1 cut(s) 204
AfaI GTAC 1 cut(s) 317
AgsI TTSAA 1 cut(s) 187
Alw26I GTCTC 1 cut(s) 161
AlwI GGATC 1 cut(s) 260
ApoI RAATTY 1 cut(s) 204
BccI CCATC 3 cut(s) 41, 59, 286
BciVI GTATCC 1 cut(s) 233
BcoDI GTCTC 1 cut(s) 161
BfaI CTAG 1 cut(s) 270
BfmI CTRYAG 2 cut(s) 78, 261
BfuI GTATCC 1 cut(s) 233
BseGI GGATG 1 cut(s) 297
BseYI CCCAGC 1 cut(s) 240
BslFI GGGAC 1 cut(s) 221
BsmAI GTCTC 1 cut(s) 161
BsmFI GGGAC 1 cut(s) 221
Bsp143I GATC 1 cut(s) 265
BspACI CCGC 1 cut(s) 144
BspPI GGATC 1 cut(s) 260
BssMI GATC 1 cut(s) 265
BstAPI GCANNNNNTGC 1 cut(s) 27
BstDEI CTNAG 1 cut(s) 126
BstF5I GGATG 1 cut(s) 297
BstKTI GATC 1 cut(s) 268
BstMAI GTCTC 1 cut(s) 161
BstMBI GATC 1 cut(s) 265
BstMWI GCNNNNNNNGC 1 cut(s) 27
BstNSI RCATGY 1 cut(s) 316
BstSFI CTRYAG 2 cut(s) 78, 261
BstX2I RGATCY 1 cut(s) 265
BstYI RGATCY 1 cut(s) 265
BsuI GTATCC 1 cut(s) 233
BtsCI GGATG 1 cut(s) 297
Csp6I GTAC 1 cut(s) 316
CviAII CATG 1 cut(s) 313
CviJI RGCY 1 cut(s) 244
CviKI_1 RGCY 1 cut(s) 244
CviQI GTAC 1 cut(s) 316
DdeI CTNAG 1 cut(s) 126
DpnI GATC 1 cut(s) 267
DpnII GATC 1 cut(s) 265
FaeI CATG 1 cut(s) 316
FaiI YATR 7 cut(s) 23, 28, 98, 123, 156, 173, 314
FaqI GGGAC 1 cut(s) 221
FatI CATG 1 cut(s) 312
FokI GGATG 1 cut(s) 304
FspBI CTAG 1 cut(s) 270
GsaI CCCAGC 1 cut(s) 244
Hin1II CATG 1 cut(s) 316
HinfI GANTC 3 cut(s) 130, 257, 359
Hpy188III TCNNGA 2 cut(s) 44, 162
HpyAV CCTTC 1 cut(s) 3
HpyCH4V TGCA 2 cut(s) 199, 312
HpyF10VI GCNNNNNNNGC 1 cut(s) 27
HpyF3I CTNAG 1 cut(s) 126
Hsp92II CATG 1 cut(s) 316
Kzo9I GATC 1 cut(s) 265
LmnI GCTCC 1 cut(s) 283
LpnPI CCDG 4 cut(s) 74, 254, 258, 332
MaeI CTAG 1 cut(s) 270
MalI GATC 1 cut(s) 267
MboI GATC 1 cut(s) 265
MflI RGATCY 1 cut(s) 265
MluCI AATT 3 cut(s) 204, 273, 323
MlyI GAGTC 1 cut(s) 368
MnlI CCTC 2 cut(s) 45, 76
MslI CAYNNNNRTG 2 cut(s) 305, 307
MwoI GCNNNNNNNGC 1 cut(s) 27
NdeII GATC 1 cut(s) 265
NlaIII CATG 1 cut(s) 316
NspI RCATGY 1 cut(s) 316
PfeI GAWTC 2 cut(s) 130, 257
PleI GAGTC 1 cut(s) 367
PpsI GAGTC 1 cut(s) 367
PspFI CCCAGC 1 cut(s) 240
PsuI RGATCY 1 cut(s) 265
RsaI GTAC 1 cut(s) 317
RsaNI GTAC 1 cut(s) 316
RseI CAYNNNNRTG 2 cut(s) 305, 307
Sau3AI GATC 1 cut(s) 265
SchI GAGTC 1 cut(s) 368
SetI ASST 5 cut(s) 93, 161, 182, 223, 321
SfcI CTRYAG 2 cut(s) 78, 261
SmiMI CAYNNNNRTG 2 cut(s) 305, 307
Sse9I AATT 3 cut(s) 204, 273, 323
SsiI CCGC 1 cut(s) 144
SspI AATATT 1 cut(s) 111
SspMI CTAG 1 cut(s) 270
TaqI TCGA 1 cut(s) 357
TasI AATT 3 cut(s) 204, 273, 323
TfiI GAWTC 2 cut(s) 130, 257
XapI RAATTY 1 cut(s) 204
XceI RCATGY 1 cut(s) 316
XspI CTAG 1 cut(s) 270
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.