pycom10g15690

Ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr10
OG0000468
Physical Location & Seq
Forward (+)
18903462 .. 18904489
1028 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom10g15690.2

Sequence Viewer

Length: 876 bp
ATGTTGATGCTCCATTCATTCATGTGTTGTTTTTTTGCATGTGAAGGTATGGATGAATATGAGACTCAATTCTTTGTTCTTTTGAACGTTTGGATTGTAATGGCACAAATCTTTACTATGAATGCACAATTGTTGAGGTATAAACATCAACAAAGGAGACAACGTGAAAGAGCTAGTTTAGAGCTGAGGACATTTGTTGGACTTCATGTTAGGAGAGAGGAAATAAATCGTATCACGCGATTGAGTGATACTAACTGTTTGTGGGAGCTGCGAATGGATAAGAATGCATTTGCAGTTTTATGTGATTTACTACAAATTCGTGGTGGGTTGGTAGATGATGGTCATGTTACAACAGAGGAGCAAGTAGTTACTTTTGTTAACATATTAGCCCACCACAATAAAAACAGGTCAATGCAAGTTAGATTCATTAGGTCTAGTGAAACTATTAGTCGGTATATTCACAGAGTATTGTGTGCGTTGCTCAATTTGCAAGACGTGTTGTTTGCAAAACCAAACCCTATCCCAAAGGATTGCACGGAATCGAGATGGAAATGTTTTAAGGGTTGCTTAGGAGCGCTAGATGGAACATACATAGAGGTCACTGTGCCTGAGGTCGATAGACCAAGATATAGTACAAGGAAGGGTCATATAGCAACTAATGTGTTAGGTGTATGCACATATGACCTCAAATTCGTACATGTGTTATCTGGTTGGGAGGGATCAACTACTGATTCGAGAGTTCTTGGTGACGCTGGTACTAGAGCTAATGGCCTCAAGGTCCCAACCGGTACATATTATTTGGTTGATTCCGGATATACGAATAGTGAGGGTTTTCTGGTACCGTATAGAGGCACTAGATACCATTTGCAAGAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DDE_Tnp_4

Protein Analysis

292

Amino Acids

33.54

Weight (kDa)

8.5

Isoelectric Point (pI)

43.24

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000468)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g04030 FvH4_2g09411 FvH4_3g15551 FvH4_3g36421 FvH4_4g11701 FvH4_5g36381 FvH4_6g09143 FvH4_6g09144 FvH4_6g21972
malus_domestica MD00G1096500.v1.1 MD00G1122500.v1.1 MD02G1090600.v1.1 MD02G1173300.v1.1 MD05G1202800.v1.1 MD14G1123600.v1.1
prunus_persica Prupe.1G083600_v2.0.a1 Prupe.1G245300_v2.0.a1 Prupe.5G002100_v2.0.a1 Prupe.6G061200_v2.0.a1
pyrus_communis pycom01g07060 pycom02g13920 pycom04g11780 pycom04g13480 pycom04g21940 pycom06g07950 pycom07g03740 pycom07g03980 pycom09g02010 pycom09g02020 pycom09g11510 pycom09g14260 pycom10g02500 pycom10g15690 pycom12g08730 pycom12g08740 pycom14g19840 pycom15g16780 pycom15g24940 pycom15g25660 pycom16g21630 pycom16g26320
rosa_chinensis RchiOBHm_Chr1g0330371 RchiOBHm_Chr1g0331991 RchiOBHm_Chr6g0300321
rosa_laevigata RLG00000013795
rosa_multiflora Rmu_sc0000060.1_g000010 Rmu_sc0000288.1_g000044 Rmu_sc0002219.1_g000002 Rmu_sc0003995.1_g000003
rosa_roxburghii Rroxscaffold_1G00059020 Rroxscaffold_2G00108450 Rroxscaffold_2G00112460 Rroxscaffold_5G00375700 Rroxscaffold_5G00381640 Rroxscaffold_7G00158590
rosa_rugosa Rorug01G0237300 Rorug01G0237400 Rorug01G0237500 Rorug02G0051900 Rorug03G0260600 Rorug03G0285800 Rorug04G0076800 Rorug04G0162600 Rorug07G0264500 Rorug07G0264500
rosa_samantha Rh2DG003500 Rh3CG244800 Rh4CG334200 Rh5AG318300 Rh5BG549000 Rh7AG126400 Rh7CG118500 Rh7CG154500 Rh7DG025400
rosa_wichuraiana Rw1G026390 Rw2G005400 Rw2G034490 Rw3G019530 Rw3G028000 Rw4G010490 Rw5G010830 Rw5G023340 Rw5G026580 Rw5G041150 Rw6G003010 Rw6G003290 Rw6G010630 Rw6G021220 Rw6G035650 Rw7G014310

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 838
AccB1I GGYRCC 1 cut(s) 838
AccII CGCG 1 cut(s) 238
AccIII TCCGGA 1 cut(s) 809
AclI AACGTT 1 cut(s) 87
AclWI GGATC 1 cut(s) 727
AcsI RAATTY 2 cut(s) 315, 689
AfaI GTAC 5 cut(s) 634, 696, 757, 790, 840
AfeI AGCGCT 1 cut(s) 576
AfiI CCNNNNNNNGG 1 cut(s) 848
AflIII ACRYGT 2 cut(s) 495, 697
AgeI ACCGGT 1 cut(s) 785
AgsI TTSAA 1 cut(s) 85
AjiI CACGTC 1 cut(s) 496
AluBI AGCT 4 cut(s) 173, 184, 268, 764
AluI AGCT 4 cut(s) 173, 184, 268, 764
Alw26I GTCTC 2 cut(s) 56, 151
AlwI GGATC 1 cut(s) 727
Aor13HI TCCGGA 1 cut(s) 809
Aor51HI AGCGCT 1 cut(s) 576
AoxI GGCC 1 cut(s) 769
ApeKI GCWGC 1 cut(s) 268
ApoI RAATTY 2 cut(s) 315, 689
ArsI GACNNNNNNTTYG 4 cut(s) 485, 517, 674, 706
AsiGI ACCGGT 1 cut(s) 785
Asp718I GGTACC 1 cut(s) 838
AspLEI GCGC 1 cut(s) 577
AspS9I GGNCC 1 cut(s) 778
AsuHPI GGTGA 1 cut(s) 758
AvaII GGWCC 1 cut(s) 778
AxyI CCTNAGG 1 cut(s) 609
BanI GGYRCC 1 cut(s) 838
BbvCI CCTCAGC 1 cut(s) 185
BbvI GCAGC 1 cut(s) 255
BccI CCATC 3 cut(s) 332, 540, 575
BcoDI GTCTC 2 cut(s) 56, 151
BfaI CTAG 5 cut(s) 174, 435, 578, 759, 855
BfoI RGCGCY 1 cut(s) 578
BisI GCNGC 1 cut(s) 269
BlsI GCNGC 1 cut(s) 270
Bme18I GGWCC 1 cut(s) 778
BmgBI CACGTC 1 cut(s) 496
BmgT120I GGNCC 1 cut(s) 778
BmiI GGNNCC 2 cut(s) 780, 840
Bpu10I CCTNAGC 2 cut(s) 185, 568
BpuEI CTTGAG 1 cut(s) 758
BsaWI WCCGGW 2 cut(s) 785, 809
BsaXI ACNNNNNCTCC 2 cut(s) 148, 178
Bsc4I CCNNNNNNNGG 1 cut(s) 848
Bse118I RCCGGY 1 cut(s) 785
Bse21I CCTNAGG 1 cut(s) 609
BseAI TCCGGA 1 cut(s) 809
BseGI GGATG 1 cut(s) 58
BseLI CCNNNNNNNGG 1 cut(s) 848
BseMII CTCAG 2 cut(s) 176, 600
BseRI GAGGAG 1 cut(s) 371
BseXI GCAGC 1 cut(s) 255
Bsh1236I CGCG 1 cut(s) 238
BshFI GGCC 1 cut(s) 771
BshNI GGYRCC 1 cut(s) 838
BshTI ACCGGT 1 cut(s) 785
BsiSI CCGG 2 cut(s) 786, 810
BslFI GGGAC 1 cut(s) 764
BslI CCNNNNNNNGG 1 cut(s) 848
BsmAI GTCTC 2 cut(s) 56, 151
BsmFI GGGAC 1 cut(s) 764
BsmI GAATGC 2 cut(s) 127, 289
BsnI GGCC 1 cut(s) 771
Bsp13I TCCGGA 1 cut(s) 809
Bsp143I GATC 1 cut(s) 719
BspANI GGCC 1 cut(s) 771
BspCNI CTCAG 2 cut(s) 177, 601
BspEI TCCGGA 1 cut(s) 809
BspFNI CGCG 1 cut(s) 238
BspLI GGNNCC 2 cut(s) 780, 840
BspPI GGATC 1 cut(s) 727
BspT107I GGYRCC 1 cut(s) 838
BsrFI RCCGGY 1 cut(s) 785
BssAI RCCGGY 1 cut(s) 785
BssMI GATC 1 cut(s) 719
Bst4CI ACNGT 3 cut(s) 257, 604, 843
BstDEI CTNAG 3 cut(s) 185, 568, 609
BstF5I GGATG 1 cut(s) 58
BstFNI CGCG 1 cut(s) 238
BstH2I RGCGCY 1 cut(s) 578
BstHHI GCGC 1 cut(s) 577
BstKTI GATC 1 cut(s) 722
BstMAI GTCTC 2 cut(s) 56, 151
BstMBI GATC 1 cut(s) 719
BstMWI GCNNNNNNNGC 1 cut(s) 487
BstNSI RCATGY 2 cut(s) 42, 701
BstUI CGCG 1 cut(s) 238
BstV1I GCAGC 1 cut(s) 255
Bsu36I CCTNAGG 1 cut(s) 609
BsuRI GGCC 1 cut(s) 771
BtrI CACGTC 1 cut(s) 496
BtsCI GGATG 1 cut(s) 58
BtsIMutI CAGTG 1 cut(s) 600
CfoI GCGC 1 cut(s) 577
Cfr10I RCCGGY 1 cut(s) 785
Cfr13I GGNCC 1 cut(s) 778
CseI GACGC 1 cut(s) 758
Csp6I GTAC 5 cut(s) 633, 695, 756, 789, 839
CspAI ACCGGT 1 cut(s) 785
CviAII CATG 5 cut(s) 22, 39, 206, 344, 698
CviJI RGCY 6 cut(s) 173, 184, 268, 389, 764, 771
CviKI_1 RGCY 6 cut(s) 173, 184, 268, 389, 764, 771
CviQI GTAC 5 cut(s) 633, 695, 756, 789, 839
DdeI CTNAG 3 cut(s) 185, 568, 609
DpnI GATC 1 cut(s) 721
DpnII GATC 1 cut(s) 719
Eco47I GGWCC 1 cut(s) 778
Eco47III AGCGCT 1 cut(s) 576
Eco81I CCTNAGG 1 cut(s) 609
EcoO109I RGGNCCY 1 cut(s) 778
EcoT22I ATGCAT 1 cut(s) 289
FaeI CATG 5 cut(s) 25, 42, 209, 347, 701
FalI AAGNNNNNCTT 2 cut(s) 551, 583
FaqI GGGAC 1 cut(s) 764
FatI CATG 5 cut(s) 21, 38, 205, 343, 697
FauNDI CATATG 1 cut(s) 679
Fnu4HI GCNGC 1 cut(s) 269
FokI GGATG 1 cut(s) 65
Fsp4HI GCNGC 1 cut(s) 269
FspBI CTAG 5 cut(s) 174, 435, 578, 759, 855
GlaI GCGC 1 cut(s) 576
GluI GCNGC 1 cut(s) 269
HaeII RGCGCY 1 cut(s) 578
HaeIII GGCC 1 cut(s) 771
HapII CCGG 2 cut(s) 786, 810
HgaI GACGC 1 cut(s) 758
HhaI GCGC 1 cut(s) 577
Hin1II CATG 5 cut(s) 25, 42, 209, 347, 701
Hin6I GCGC 1 cut(s) 575
HinP1I GCGC 1 cut(s) 575
HincII GTYRAC 1 cut(s) 379
HindII GTYRAC 1 cut(s) 379
HinfI GANTC 5 cut(s) 64, 423, 539, 731, 806
HpaI GTTAAC 1 cut(s) 379
HpaII CCGG 2 cut(s) 786, 810
HphI GGTGA 1 cut(s) 758
Hpy166II GTNNAC 1 cut(s) 379
Hpy188III TCNNGA 3 cut(s) 543, 735, 810
Hpy8I GTNNAC 1 cut(s) 379
HpyAV CCTTC 2 cut(s) 38, 634
HpyCH4III ACNGT 3 cut(s) 257, 604, 843
HpyCH4IV ACGT 3 cut(s) 87, 163, 495
HpyF10VI GCNNNNNNNGC 1 cut(s) 487
HpyF3I CTNAG 3 cut(s) 185, 568, 609
HpySE526I ACGT 3 cut(s) 87, 163, 495
Hsp92II CATG 5 cut(s) 25, 42, 209, 347, 701
HspAI GCGC 1 cut(s) 575
Kpn2I TCCGGA 1 cut(s) 809
KpnI GGTACC 1 cut(s) 842
KspAI GTTAAC 1 cut(s) 379
Kzo9I GATC 1 cut(s) 719
LmnI GCTCC 4 cut(s) 15, 265, 358, 572
LpnPI CCDG 7 cut(s) 391, 621, 693, 738, 799, 821, 823
Lsp1109I GCAGC 1 cut(s) 255
MaeI CTAG 5 cut(s) 174, 435, 578, 759, 855
MaeII ACGT 3 cut(s) 87, 163, 495
MaeIII GTNAC 4 cut(s) 346, 367, 598, 746
MalI GATC 1 cut(s) 721
MboI GATC 1 cut(s) 719
MfeI CAATTG 1 cut(s) 128
MluCI AATT 5 cut(s) 68, 128, 315, 484, 689
MlyI GAGTC 1 cut(s) 58
MmeI TCCRAC 1 cut(s) 178
Mph1103I ATGCAT 1 cut(s) 289
MroI TCCGGA 1 cut(s) 809
MseI TTAA 2 cut(s) 378, 558
MslI CAYNNNNRTG 1 cut(s) 22
MspI CCGG 2 cut(s) 786, 810
MunI CAATTG 1 cut(s) 128
Mva1269I GAATGC 2 cut(s) 127, 289
MvnI CGCG 1 cut(s) 238
MwoI GCNNNNNNNGC 1 cut(s) 487
NdeI CATATG 1 cut(s) 679
NdeII GATC 1 cut(s) 719
NlaIII CATG 5 cut(s) 25, 42, 209, 347, 701
NlaIV GGNNCC 2 cut(s) 780, 840
NmuCI GTSAC 2 cut(s) 598, 746
NsiI ATGCAT 1 cut(s) 289
NspI RCATGY 2 cut(s) 42, 701
PciI ACATGT 1 cut(s) 697
PcsI WCGNNNNNNNCGW 1 cut(s) 235
PctI GAATGC 2 cut(s) 127, 289
PfeI GAWTC 4 cut(s) 423, 539, 731, 806
PinAI ACCGGT 1 cut(s) 785
PkrI GCNGC 1 cut(s) 270
PleI GAGTC 1 cut(s) 58
PpsI GAGTC 1 cut(s) 58
PpuMI RGGWCCY 1 cut(s) 778
PscI ACATGT 1 cut(s) 697
Psp1406I AACGTT 1 cut(s) 87
Psp5II RGGWCCY 1 cut(s) 778
PspN4I GGNNCC 2 cut(s) 780, 840
PspPI GGNCC 1 cut(s) 778
PspPPI RGGWCCY 1 cut(s) 778
RsaI GTAC 5 cut(s) 634, 696, 757, 790, 840
RsaNI GTAC 5 cut(s) 633, 695, 756, 789, 839
RseI CAYNNNNRTG 1 cut(s) 22
SaqAI TTAA 2 cut(s) 378, 558
SatI GCNGC 1 cut(s) 269
Sau3AI GATC 1 cut(s) 719
Sau96I GGNCC 1 cut(s) 778
SchI GAGTC 1 cut(s) 58
SinI GGWCC 1 cut(s) 778
SmiMI CAYNNNNRTG 1 cut(s) 22
SmlI CTYRAG 1 cut(s) 773
SmoI CTYRAG 1 cut(s) 773
Sse9I AATT 5 cut(s) 68, 128, 315, 484, 689
SspMI CTAG 5 cut(s) 174, 435, 578, 759, 855
TaaI ACNGT 3 cut(s) 257, 604, 843
TaiI ACGT 3 cut(s) 90, 166, 498
TaqI TCGA 3 cut(s) 542, 615, 734
TasI AATT 5 cut(s) 68, 128, 315, 484, 689
TatI WGTACW 1 cut(s) 632
TfiI GAWTC 4 cut(s) 423, 539, 731, 806
Tru1I TTAA 2 cut(s) 378, 558
Tru9I TTAA 2 cut(s) 378, 558
TscAI CASTG 1 cut(s) 607
TseFI GTSAC 2 cut(s) 598, 746
TseI GCWGC 1 cut(s) 268
Tsp45I GTSAC 2 cut(s) 598, 746
TspDTI ATGAA 6 cut(s) 6, 10, 69, 134, 194, 415
TspGWI ACGGA 1 cut(s) 551
TspRI CASTG 1 cut(s) 607
VpaK11BI GGWCC 1 cut(s) 778
XapI RAATTY 2 cut(s) 315, 689
XceI RCATGY 2 cut(s) 42, 701
XspI CTAG 5 cut(s) 174, 435, 578, 759, 855
Zsp2I ATGCAT 1 cut(s) 289
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.