pycom04g13480

Ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr4
OG0000468
Physical Location & Seq
Reverse (-)
16521162 .. 16522823
1662 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom04g13480.3

Sequence Viewer

Length: 1185 bp
ATGGCACAAGTCTTTACTATGAATGCACAATTGTTGAGGTATAGACAACAACAAAGGAGACAACGGGAAATAGCTAGTTTAGAGCAGAGGACATTTGTTAGACTTCATGTTAGGAGAGAGGAAATAAATCGTATCACGCGATTGAGTGATACTAACTGTTTGTGGGAGCTACGAATGGATAGGAATGCATTTGCAGTTTTATGTGATTTACTACAAACTCGTGGTGGATTGGTAGATGATGGTCATGTTACAATAGAGGAGCAAGTAGCTACTTTTGTTAACATATTAGCCCACCACAATAAAAATAGGTCAATGCAAGTTAGATTTTTTAGGTCTGGTGAAACTATTAGTCGATATGTCCGTAGAGTATTGCGTGCATTACTCAGTTTGCAAGATGTGTTGTTTGCAAAACCAACCCCTATCCCAGAGGATTGCACGGAATCGAGATGGAAATGCTTTAAGGGTTGCTTAGGAGCGCTAGATGGAACATACATAGGGGTCACTGTGCCTGATGTCGATAGACCAAGATATAGAACAAGGAAGGGTCATATAGCAACTAATGTGTTAGGCGTATGCACACACGACCTCAAATTCGTATATGTGTTATCCGGTTGGGAGGGATCAGCTACTGATTCGAGAGTTCTTGGTGACGCTGTTACTAGAGCTAATGGCCTCAAGGTCCCAACTGGTACATATTATTTGGTTGATTCCGGATATACGAATGGTGAGGGTTTTCTGGCACCGTATAGAGGCACTAGATACCATTTGCAAGAGTGGGAAAACAATTCACGTGCACCTAGGAATCATGAAGAATATTTTAATATGAAACACTCACGTGCTAGGAATGTCATTGAGAGATGTTTTGGCCTCCTCAAACGACGTTGGGCTATCTTACGAAGTCCTTCCCACTATCCAATCAAGATTCAGGGACGAATGATCACCGCATGTAGTTTACTTCATAATTTTATCAGAATGTATATGGCAGTTGATCCTGAAGAAAATGCAAGGCTTGCATTTGATGAATTACCTATAGGGGAAGATTTACCAGAAGTATTAGCCTACATTGAAACCGTTGAGTCAAGCCAAATATGGACTCAATGGAGGGATGATCTTGCAAGAGAAATATATGATGAGTGGAGAGGAAGGAGGGGCTTATTTGATAGATTATATGGCCACCTCACGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DDE_Tnp_4

Protein Analysis

395

Amino Acids

45.95

Weight (kDa)

9.24

Isoelectric Point (pI)

55.12

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000468)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g04030 FvH4_2g09411 FvH4_3g15551 FvH4_3g36421 FvH4_4g11701 FvH4_5g36381 FvH4_6g09143 FvH4_6g09144 FvH4_6g21972
malus_domestica MD00G1096500.v1.1 MD00G1122500.v1.1 MD02G1090600.v1.1 MD02G1173300.v1.1 MD05G1202800.v1.1 MD14G1123600.v1.1
prunus_persica Prupe.1G083600_v2.0.a1 Prupe.1G245300_v2.0.a1 Prupe.5G002100_v2.0.a1 Prupe.6G061200_v2.0.a1
pyrus_communis pycom01g07060 pycom02g13920 pycom04g11780 pycom04g13480 pycom04g21940 pycom06g07950 pycom07g03740 pycom07g03980 pycom09g02010 pycom09g02020 pycom09g11510 pycom09g14260 pycom10g02500 pycom10g15690 pycom12g08730 pycom12g08740 pycom14g19840 pycom15g16780 pycom15g24940 pycom15g25660 pycom16g21630 pycom16g26320
rosa_chinensis RchiOBHm_Chr1g0330371 RchiOBHm_Chr1g0331991 RchiOBHm_Chr6g0300321
rosa_laevigata RLG00000013795
rosa_multiflora Rmu_sc0000060.1_g000010 Rmu_sc0000288.1_g000044 Rmu_sc0002219.1_g000002 Rmu_sc0003995.1_g000003
rosa_roxburghii Rroxscaffold_1G00059020 Rroxscaffold_2G00108450 Rroxscaffold_2G00112460 Rroxscaffold_5G00375700 Rroxscaffold_5G00381640 Rroxscaffold_7G00158590
rosa_rugosa Rorug01G0237300 Rorug01G0237400 Rorug01G0237500 Rorug02G0051900 Rorug03G0260600 Rorug03G0285800 Rorug04G0076800 Rorug04G0162600 Rorug07G0264500 Rorug07G0264500
rosa_samantha Rh2DG003500 Rh3CG244800 Rh4CG334200 Rh5AG318300 Rh5BG549000 Rh7AG126400 Rh7CG118500 Rh7CG154500 Rh7DG025400
rosa_wichuraiana Rw1G026390 Rw2G005400 Rw2G034490 Rw3G019530 Rw3G028000 Rw4G010490 Rw5G010830 Rw5G023340 Rw5G026580 Rw5G041150 Rw6G003010 Rw6G003290 Rw6G010630 Rw6G021220 Rw6G035650 Rw7G014310

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 739
AccII CGCG 1 cut(s) 139
AccIII TCCGGA 1 cut(s) 710
AciI CCGC 1 cut(s) 942
AclWI GGATC 2 cut(s) 628, 983
AcoI YGGCCR 1 cut(s) 1171
AcsI RAATTY 1 cut(s) 590
AcuI CTGAAG 1 cut(s) 1014
AcvI CACGTG 2 cut(s) 791, 836
AfaI GTAC 1 cut(s) 691
AfeI AGCGCT 1 cut(s) 477
AfiI CCNNNNNNNGG 1 cut(s) 749
AgsI TTSAA 1 cut(s) 1067
AleI CACNNNNGTG 1 cut(s) 834
AluBI AGCT 5 cut(s) 74, 169, 269, 626, 665
AluI AGCT 5 cut(s) 74, 169, 269, 626, 665
Alw21I GWGCWC 1 cut(s) 796
Alw26I GTCTC 1 cut(s) 52
Alw44I GTGCAC 1 cut(s) 792
AlwI GGATC 2 cut(s) 628, 983
AlwNI CAGNNNCTG 1 cut(s) 629
Aor13HI TCCGGA 1 cut(s) 710
Aor51HI AGCGCT 1 cut(s) 477
AoxI GGCC 3 cut(s) 670, 865, 1171
ApaLI GTGCAC 1 cut(s) 792
ApoI RAATTY 1 cut(s) 590
ArsI GACNNNNNNTTYG 2 cut(s) 575, 607
Asp700I GAANNNNTTC 1 cut(s) 901
AspA2I CCTAGG 1 cut(s) 797
AspLEI GCGC 1 cut(s) 478
AspS9I GGNCC 1 cut(s) 679
AsuHPI GGTGA 4 cut(s) 350, 659, 737, 931
AvaII GGWCC 1 cut(s) 679
AvrII CCTAGG 1 cut(s) 797
BaeGI GKGCMC 1 cut(s) 796
BalI TGGCCA 1 cut(s) 1173
BanI GGYRCC 1 cut(s) 739
BauI CACGAG 1 cut(s) 219
BbrPI CACGTG 2 cut(s) 791, 836
Bbv12I GWGCWC 1 cut(s) 796
BccI CCATC 3 cut(s) 233, 441, 476
BclI TGATCA 1 cut(s) 936
BcoDI GTCTC 1 cut(s) 52
BfaI CTAG 6 cut(s) 75, 479, 660, 756, 798, 840
BfmI CTRYAG 1 cut(s) 1029
BfoI RGCGCY 1 cut(s) 479
BlnI CCTAGG 1 cut(s) 797
Bme18I GGWCC 1 cut(s) 679
BmgT120I GGNCC 1 cut(s) 679
BmiI GGNNCC 2 cut(s) 681, 741
Bpu10I CCTNAGC 1 cut(s) 469
BpuEI CTTGAG 1 cut(s) 659
BsaAI YACGTR 3 cut(s) 791, 836, 1182
BsaJI CCNNGG 1 cut(s) 797
BsaWI WCCGGW 2 cut(s) 608, 710
Bsc4I CCNNNNNNNGG 1 cut(s) 749
Bse1I ACTGG 1 cut(s) 691
BseAI TCCGGA 1 cut(s) 710
BseDI CCNNGG 1 cut(s) 797
BseGI GGATG 1 cut(s) 1111
BseLI CCNNNNNNNGG 1 cut(s) 749
BseMII CTCAG 1 cut(s) 397
BseNI ACTGG 1 cut(s) 691
BseRI GAGGAG 2 cut(s) 272, 860
BseSI GKGCMC 1 cut(s) 796
Bsh1236I CGCG 1 cut(s) 139
BshFI GGCC 3 cut(s) 672, 867, 1173
BshNI GGYRCC 1 cut(s) 739
BsiHKAI GWGCWC 1 cut(s) 796
BsiSI CCGG 2 cut(s) 609, 711
BslFI GGGAC 2 cut(s) 665, 942
BslI CCNNNNNNNGG 1 cut(s) 749
BsmAI GTCTC 1 cut(s) 52
BsmFI GGGAC 2 cut(s) 665, 942
BsmI GAATGC 2 cut(s) 28, 190
BsnI GGCC 3 cut(s) 672, 867, 1173
Bsp1286I GDGCHC 1 cut(s) 796
Bsp13I TCCGGA 1 cut(s) 710
Bsp143I GATC 4 cut(s) 620, 936, 988, 1108
BspACI CCGC 1 cut(s) 942
BspANI GGCC 3 cut(s) 672, 867, 1173
BspCNI CTCAG 1 cut(s) 396
BspEI TCCGGA 1 cut(s) 710
BspFNI CGCG 1 cut(s) 139
BspHI TCATGA 1 cut(s) 805
BspLI GGNNCC 2 cut(s) 681, 741
BspPI GGATC 2 cut(s) 628, 983
BspT107I GGYRCC 1 cut(s) 739
BsrI ACTGG 1 cut(s) 691
BssECI CCNNGG 1 cut(s) 797
BssMI GATC 4 cut(s) 620, 936, 988, 1108
BssSI CACGAG 1 cut(s) 219
BssT1I CCWWGG 1 cut(s) 797
Bst2BI CACGAG 1 cut(s) 219
Bst4CI ACNGT 4 cut(s) 158, 505, 744, 1072
BstAPI GCANNNNNTGC 1 cut(s) 1010
BstBAI YACGTR 3 cut(s) 791, 836, 1182
BstC8I GCNNGC 2 cut(s) 375, 1011
BstDEI CTNAG 2 cut(s) 383, 469
BstF5I GGATG 1 cut(s) 1111
BstFNI CGCG 1 cut(s) 139
BstH2I RGCGCY 1 cut(s) 479
BstHHI GCGC 1 cut(s) 478
BstKTI GATC 4 cut(s) 623, 939, 991, 1111
BstMAI GTCTC 1 cut(s) 52
BstMBI GATC 4 cut(s) 620, 936, 988, 1108
BstMWI GCNNNNNNNGC 1 cut(s) 1010
BstNSI RCATGY 1 cut(s) 948
BstSFI CTRYAG 1 cut(s) 1029
BstSLI GKGCMC 1 cut(s) 796
BstUI CGCG 1 cut(s) 139
BsuRI GGCC 3 cut(s) 672, 867, 1173
BtsCI GGATG 1 cut(s) 1111
BtsIMutI CAGTG 1 cut(s) 501
Cac8I GCNNGC 2 cut(s) 375, 1011
CaiI CAGNNNCTG 1 cut(s) 629
CciI TCATGA 1 cut(s) 805
CfoI GCGC 1 cut(s) 478
Cfr13I GGNCC 1 cut(s) 679
CseI GACGC 1 cut(s) 659
Csp6I GTAC 1 cut(s) 690
CviAII CATG 4 cut(s) 107, 245, 806, 945
CviQI GTAC 1 cut(s) 690
DdeI CTNAG 2 cut(s) 383, 469
DpnI GATC 4 cut(s) 622, 938, 990, 1110
DpnII GATC 4 cut(s) 620, 936, 988, 1108
EaeI YGGCCR 1 cut(s) 1171
Eco130I CCWWGG 1 cut(s) 797
Eco47I GGWCC 1 cut(s) 679
Eco47III AGCGCT 1 cut(s) 477
Eco57I CTGAAG 1 cut(s) 1014
Eco72I CACGTG 2 cut(s) 791, 836
EcoO109I RGGNCCY 1 cut(s) 679
EcoT14I CCWWGG 1 cut(s) 797
EcoT22I ATGCAT 1 cut(s) 190
ErhI CCWWGG 1 cut(s) 797
FaeI CATG 4 cut(s) 110, 248, 809, 948
FalI AAGNNNNNCTT 2 cut(s) 452, 484
FaqI GGGAC 2 cut(s) 665, 942
FatI CATG 4 cut(s) 106, 244, 805, 944
FbaI TGATCA 1 cut(s) 936
FokI GGATG 1 cut(s) 1118
FspBI CTAG 6 cut(s) 75, 479, 660, 756, 798, 840
GlaI GCGC 1 cut(s) 477
HaeII RGCGCY 1 cut(s) 479
HaeIII GGCC 3 cut(s) 672, 867, 1173
HapII CCGG 2 cut(s) 609, 711
HgaI GACGC 1 cut(s) 659
HhaI GCGC 1 cut(s) 478
Hin1II CATG 4 cut(s) 110, 248, 809, 948
Hin6I GCGC 1 cut(s) 476
HinP1I GCGC 1 cut(s) 476
HincII GTYRAC 1 cut(s) 280
HindII GTYRAC 1 cut(s) 280
HinfI GANTC 7 cut(s) 440, 632, 707, 802, 922, 1076, 1093
HpaI GTTAAC 1 cut(s) 280
HpaII CCGG 2 cut(s) 609, 711
HphI GGTGA 4 cut(s) 350, 659, 737, 931
Hpy166II GTNNAC 3 cut(s) 280, 794, 953
Hpy188I TCNGA 1 cut(s) 971
Hpy188III TCNNGA 6 cut(s) 444, 636, 711, 806, 919, 992
Hpy8I GTNNAC 3 cut(s) 280, 794, 953
Hpy99I CGWCG 1 cut(s) 882
HpyAV CCTTC 3 cut(s) 535, 912, 1137
HpyCH4III ACNGT 4 cut(s) 158, 505, 744, 1072
HpyCH4IV ACGT 4 cut(s) 790, 835, 880, 1181
HpyF10VI GCNNNNNNNGC 1 cut(s) 1010
HpyF3I CTNAG 2 cut(s) 383, 469
HpySE526I ACGT 4 cut(s) 790, 835, 880, 1181
Hsp92II CATG 4 cut(s) 110, 248, 809, 948
HspAI GCGC 1 cut(s) 476
Kpn2I TCCGGA 1 cut(s) 710
Ksp22I TGATCA 1 cut(s) 936
KspAI GTTAAC 1 cut(s) 280
Kzo9I GATC 4 cut(s) 620, 936, 988, 1108
LmnI GCTCC 3 cut(s) 166, 259, 473
MaeI CTAG 6 cut(s) 75, 479, 660, 756, 798, 840
MaeII ACGT 4 cut(s) 790, 835, 880, 1181
MaeIII GTNAC 4 cut(s) 247, 499, 647, 655
MalI GATC 4 cut(s) 622, 938, 990, 1110
MboI GATC 4 cut(s) 620, 936, 988, 1108
MboII GAAGA 3 cut(s) 821, 1007, 1049
MfeI CAATTG 1 cut(s) 29
MhlI GDGCHC 1 cut(s) 796
MlsI TGGCCA 1 cut(s) 1173
MluCI AATT 5 cut(s) 29, 590, 784, 961, 1022
MluNI TGGCCA 1 cut(s) 1173
MlyI GAGTC 2 cut(s) 1085, 1087
Mox20I TGGCCA 1 cut(s) 1173
Mph1103I ATGCAT 1 cut(s) 190
MroI TCCGGA 1 cut(s) 710
MroXI GAANNNNTTC 1 cut(s) 901
MscI TGGCCA 1 cut(s) 1173
MseI TTAA 3 cut(s) 279, 459, 819
MslI CAYNNNNRTG 1 cut(s) 834
Msp20I TGGCCA 1 cut(s) 1173
MspI CCGG 2 cut(s) 609, 711
MunI CAATTG 1 cut(s) 29
Mva1269I GAATGC 2 cut(s) 28, 190
MvnI CGCG 1 cut(s) 139
MwoI GCNNNNNNNGC 1 cut(s) 1010
NdeII GATC 4 cut(s) 620, 936, 988, 1108
NlaIII CATG 4 cut(s) 110, 248, 809, 948
NlaIV GGNNCC 2 cut(s) 681, 741
NmuCI GTSAC 2 cut(s) 499, 647
NsiI ATGCAT 1 cut(s) 190
NspI RCATGY 1 cut(s) 948
OliI CACNNNNGTG 1 cut(s) 834
PagI TCATGA 1 cut(s) 805
PcsI WCGNNNNNNNCGW 2 cut(s) 136, 358
PctI GAATGC 2 cut(s) 28, 190
PdmI GAANNNNTTC 1 cut(s) 901
PfeI GAWTC 5 cut(s) 440, 632, 707, 802, 922
PleI GAGTC 2 cut(s) 1084, 1087
PmaCI CACGTG 2 cut(s) 791, 836
PmlI CACGTG 2 cut(s) 791, 836
PpsI GAGTC 2 cut(s) 1084, 1087
Ppu21I YACGTR 3 cut(s) 791, 836, 1182
PpuMI RGGWCCY 1 cut(s) 679
Psp5II RGGWCCY 1 cut(s) 679
PspCI CACGTG 2 cut(s) 791, 836
PspN4I GGNNCC 2 cut(s) 681, 741
PspPI GGNCC 1 cut(s) 679
PspPPI RGGWCCY 1 cut(s) 679
PstNI CAGNNNCTG 1 cut(s) 629
RsaI GTAC 1 cut(s) 691
RsaNI GTAC 1 cut(s) 690
RseI CAYNNNNRTG 1 cut(s) 834
SaqAI TTAA 3 cut(s) 279, 459, 819
Sau3AI GATC 4 cut(s) 620, 936, 988, 1108
Sau96I GGNCC 1 cut(s) 679
SchI GAGTC 2 cut(s) 1085, 1087
SduI GDGCHC 1 cut(s) 796
SfcI CTRYAG 1 cut(s) 1029
SinI GGWCC 1 cut(s) 679
SmiMI CAYNNNNRTG 1 cut(s) 834
SmlI CTYRAG 1 cut(s) 674
SmoI CTYRAG 1 cut(s) 674
Sse9I AATT 5 cut(s) 29, 590, 784, 961, 1022
SsiI CCGC 1 cut(s) 942
SspI AATATT 1 cut(s) 815
SspMI CTAG 6 cut(s) 75, 479, 660, 756, 798, 840
StyI CCWWGG 1 cut(s) 797
TaaI ACNGT 4 cut(s) 158, 505, 744, 1072
TaiI ACGT 4 cut(s) 793, 838, 883, 1184
TaqI TCGA 4 cut(s) 352, 443, 516, 635
TasI AATT 5 cut(s) 29, 590, 784, 961, 1022
TfiI GAWTC 5 cut(s) 440, 632, 707, 802, 922
Tru1I TTAA 3 cut(s) 279, 459, 819
Tru9I TTAA 3 cut(s) 279, 459, 819
TscAI CASTG 1 cut(s) 508
TseFI GTSAC 2 cut(s) 499, 647
Tsp45I GTSAC 2 cut(s) 499, 647
TspDTI ATGAA 6 cut(s) 35, 95, 822, 839, 947, 1035
TspGWI ACGGA 2 cut(s) 350, 452
TspRI CASTG 1 cut(s) 508
VneI GTGCAC 1 cut(s) 792
VpaK11BI GGWCC 1 cut(s) 679
XapI RAATTY 1 cut(s) 590
XceI RCATGY 1 cut(s) 948
XmaJI CCTAGG 1 cut(s) 797
XmnI GAANNNNTTC 1 cut(s) 901
XspI CTAG 6 cut(s) 75, 479, 660, 756, 798, 840
Zsp2I ATGCAT 1 cut(s) 190
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.