Ribonuclease H protein
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| DUF8040 | PF26138 | 59 - 145 | 1.6e-21 | Domain of unknown function (DUF8040) |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 50 |
| AccII | CGCG | 1 cut(s) | 190 |
| AgsI | TTSAA | 2 cut(s) | 37, 368 |
| AluBI | AGCT | 3 cut(s) | 125, 220, 320 |
| AluI | AGCT | 3 cut(s) | 125, 220, 320 |
| Alw21I | GWGCWC | 1 cut(s) | 79 |
| Alw26I | GTCTC | 2 cut(s) | 8, 103 |
| Alw44I | GTGCAC | 1 cut(s) | 75 |
| ApaLI | GTGCAC | 1 cut(s) | 75 |
| ApeKI | GCWGC | 1 cut(s) | 220 |
| AseI | ATTAAT | 1 cut(s) | 560 |
| AsuHPI | GGTGA | 1 cut(s) | 401 |
| BaeGI | GKGCMC | 1 cut(s) | 79 |
| BauI | CACGAG | 1 cut(s) | 270 |
| Bbv12I | GWGCWC | 1 cut(s) | 79 |
| BbvI | GCAGC | 1 cut(s) | 207 |
| BccI | CCATC | 3 cut(s) | 284, 492, 516 |
| BcoDI | GTCTC | 2 cut(s) | 8, 103 |
| BfaI | CTAG | 2 cut(s) | 126, 338 |
| BisI | GCNGC | 1 cut(s) | 221 |
| BlsI | GCNGC | 1 cut(s) | 222 |
| BseGI | GGATG | 1 cut(s) | 10 |
| BseMII | CTCAG | 1 cut(s) | 448 |
| BseSI | GKGCMC | 1 cut(s) | 79 |
| BseXI | GCAGC | 1 cut(s) | 207 |
| Bsh1236I | CGCG | 1 cut(s) | 190 |
| BsiHKAI | GWGCWC | 1 cut(s) | 79 |
| BsmAI | GTCTC | 2 cut(s) | 8, 103 |
| BsmI | GAATGC | 1 cut(s) | 241 |
| Bsp1286I | GDGCHC | 1 cut(s) | 79 |
| BspCNI | CTCAG | 2 cut(s) | 4, 447 |
| BspFNI | CGCG | 1 cut(s) | 190 |
| BssSI | CACGAG | 1 cut(s) | 270 |
| Bst2BI | CACGAG | 1 cut(s) | 270 |
| Bst4CI | ACNGT | 2 cut(s) | 81, 209 |
| BstC8I | GCNNGC | 1 cut(s) | 426 |
| BstDEI | CTNAG | 2 cut(s) | 12, 434 |
| BstF5I | GGATG | 1 cut(s) | 10 |
| BstFNI | CGCG | 1 cut(s) | 190 |
| BstMAI | GTCTC | 2 cut(s) | 8, 103 |
| BstSLI | GKGCMC | 1 cut(s) | 79 |
| BstUI | CGCG | 1 cut(s) | 190 |
| BstV1I | GCAGC | 1 cut(s) | 207 |
| BtsCI | GGATG | 1 cut(s) | 10 |
| Cac8I | GCNNGC | 1 cut(s) | 426 |
| CviAII | CATG | 2 cut(s) | 158, 296 |
| CviJI | RGCY | 4 cut(s) | 125, 220, 320, 341 |
| CviKI_1 | RGCY | 4 cut(s) | 125, 220, 320, 341 |
| DdeI | CTNAG | 2 cut(s) | 12, 434 |
| EcoT22I | ATGCAT | 1 cut(s) | 241 |
| FaeI | CATG | 2 cut(s) | 161, 299 |
| FatI | CATG | 2 cut(s) | 157, 295 |
| Fnu4HI | GCNGC | 1 cut(s) | 221 |
| FokI | GGATG | 1 cut(s) | 17 |
| Fsp4HI | GCNGC | 1 cut(s) | 221 |
| FspBI | CTAG | 2 cut(s) | 126, 338 |
| GluI | GCNGC | 1 cut(s) | 221 |
| Hin1II | CATG | 2 cut(s) | 161, 299 |
| HincII | GTYRAC | 1 cut(s) | 331 |
| HindII | GTYRAC | 1 cut(s) | 331 |
| HinfI | GANTC | 5 cut(s) | 8, 16, 375, 491, 515 |
| HpaI | GTTAAC | 1 cut(s) | 331 |
| HphI | GGTGA | 1 cut(s) | 401 |
| Hpy166II | GTNNAC | 2 cut(s) | 77, 331 |
| Hpy188I | TCNGA | 1 cut(s) | 13 |
| Hpy188III | TCNNGA | 2 cut(s) | 495, 519 |
| Hpy8I | GTNNAC | 2 cut(s) | 77, 331 |
| HpyAV | CCTTC | 1 cut(s) | 496 |
| HpyCH4III | ACNGT | 2 cut(s) | 81, 209 |
| HpyCH4V | TGCA | 8 cut(s) | 77, 239, 245, 428, 442, 458, 486, 510 |
| HpyF3I | CTNAG | 2 cut(s) | 12, 434 |
| Hsp92II | CATG | 2 cut(s) | 161, 299 |
| KspAI | GTTAAC | 1 cut(s) | 331 |
| LmnI | GCTCC | 1 cut(s) | 217 |
| LpnPI | CCDG | 2 cut(s) | 101, 372 |
| Lsp1109I | GCAGC | 1 cut(s) | 207 |
| MaeI | CTAG | 2 cut(s) | 126, 338 |
| MaeIII | GTNAC | 1 cut(s) | 298 |
| MhlI | GDGCHC | 1 cut(s) | 79 |
| MluCI | AATT | 2 cut(s) | 20, 363 |
| MlyI | GAGTC | 1 cut(s) | 10 |
| MnlI | CCTC | 2 cut(s) | 81, 163 |
| Mph1103I | ATGCAT | 1 cut(s) | 241 |
| MseI | TTAA | 3 cut(s) | 330, 534, 560 |
| Mva1269I | GAATGC | 1 cut(s) | 241 |
| MvnI | CGCG | 1 cut(s) | 190 |
| NlaIII | CATG | 2 cut(s) | 161, 299 |
| NsiI | ATGCAT | 1 cut(s) | 241 |
| PcsI | WCGNNNNNNNCGW | 2 cut(s) | 187, 409 |
| PctI | GAATGC | 1 cut(s) | 241 |
| PfeI | GAWTC | 4 cut(s) | 8, 375, 491, 515 |
| PkrI | GCNGC | 1 cut(s) | 222 |
| PleI | GAGTC | 1 cut(s) | 10 |
| PpsI | GAGTC | 1 cut(s) | 10 |
| PshBI | ATTAAT | 1 cut(s) | 560 |
| PsiI | TTATAA | 1 cut(s) | 50 |
| SaqAI | TTAA | 3 cut(s) | 330, 534, 560 |
| SatI | GCNGC | 1 cut(s) | 221 |
| SchI | GAGTC | 1 cut(s) | 10 |
| SduI | GDGCHC | 1 cut(s) | 79 |
| SetI | ASST | 7 cut(s) | 92, 127, 222, 322, 362, 386, 540 |
| Sse9I | AATT | 2 cut(s) | 20, 363 |
| SspMI | CTAG | 2 cut(s) | 126, 338 |
| TaaI | ACNGT | 2 cut(s) | 81, 209 |
| TaqI | TCGA | 3 cut(s) | 403, 494, 518 |
| TasI | AATT | 2 cut(s) | 20, 363 |
| TfiI | GAWTC | 4 cut(s) | 8, 375, 491, 515 |
| Tru1I | TTAA | 3 cut(s) | 330, 534, 560 |
| Tru9I | TTAA | 3 cut(s) | 330, 534, 560 |
| TseI | GCWGC | 1 cut(s) | 220 |
| TspDTI | ATGAA | 3 cut(s) | 21, 146, 367 |
| TspGWI | ACGGA | 2 cut(s) | 503, 527 |
| VneI | GTGCAC | 1 cut(s) | 75 |
| VspI | ATTAAT | 1 cut(s) | 560 |
| XspI | CTAG | 2 cut(s) | 126, 338 |
| Zsp2I | ATGCAT | 1 cut(s) | 241 |