Ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 140 |
| AccB1I | GGYRCC | 2 cut(s) | 880, 934 |
| AccII | CGCG | 1 cut(s) | 280 |
| AccIII | TCCGGA | 1 cut(s) | 851 |
| AciI | CCGC | 1 cut(s) | 1083 |
| AclI | AACGTT | 1 cut(s) | 129 |
| AclWI | GGATC | 2 cut(s) | 769, 1124 |
| AcoI | YGGCCR | 1 cut(s) | 1312 |
| AcsI | RAATTY | 1 cut(s) | 731 |
| AcuI | CTGAAG | 1 cut(s) | 1155 |
| AfaI | GTAC | 1 cut(s) | 832 |
| AfeI | AGCGCT | 1 cut(s) | 618 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 890 |
| AgsI | TTSAA | 1 cut(s) | 127 |
| AleI | CACNNNNGTG | 1 cut(s) | 975 |
| AluBI | AGCT | 5 cut(s) | 215, 310, 410, 767, 806 |
| AluI | AGCT | 5 cut(s) | 215, 310, 410, 767, 806 |
| Alw26I | GTCTC | 2 cut(s) | 98, 193 |
| AlwI | GGATC | 2 cut(s) | 769, 1124 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 770 |
| Aor13HI | TCCGGA | 1 cut(s) | 851 |
| Aor51HI | AGCGCT | 1 cut(s) | 618 |
| AoxI | GGCC | 3 cut(s) | 811, 1006, 1312 |
| ApoI | RAATTY | 1 cut(s) | 731 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 716, 748 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 1042 |
| AspA2I | CCTAGG | 1 cut(s) | 938 |
| AspLEI | GCGC | 1 cut(s) | 619 |
| AspS9I | GGNCC | 1 cut(s) | 820 |
| AsuHPI | GGTGA | 4 cut(s) | 491, 800, 878, 1072 |
| AvaII | GGWCC | 1 cut(s) | 820 |
| AvrII | CCTAGG | 1 cut(s) | 938 |
| BaeGI | GKGCMC | 1 cut(s) | 937 |
| BalI | TGGCCA | 1 cut(s) | 1314 |
| BanI | GGYRCC | 2 cut(s) | 880, 934 |
| BauI | CACGAG | 1 cut(s) | 360 |
| BccI | CCATC | 3 cut(s) | 374, 582, 617 |
| BclI | TGATCA | 1 cut(s) | 1077 |
| BcoDI | GTCTC | 2 cut(s) | 98, 193 |
| BfaI | CTAG | 6 cut(s) | 216, 620, 801, 897, 939, 981 |
| BfmI | CTRYAG | 1 cut(s) | 1170 |
| BfoI | RGCGCY | 1 cut(s) | 620 |
| BlnI | CCTAGG | 1 cut(s) | 938 |
| Bme18I | GGWCC | 1 cut(s) | 820 |
| BmgT120I | GGNCC | 1 cut(s) | 820 |
| BmiI | GGNNCC | 3 cut(s) | 822, 882, 936 |
| BmsI | GCATC | 1 cut(s) | 643 |
| Bpu10I | CCTNAGC | 1 cut(s) | 610 |
| BpuEI | CTTGAG | 1 cut(s) | 800 |
| BsaAI | YACGTR | 1 cut(s) | 1323 |
| BsaJI | CCNNGG | 1 cut(s) | 938 |
| BsaWI | WCCGGW | 2 cut(s) | 749, 851 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 890 |
| Bse1I | ACTGG | 1 cut(s) | 832 |
| BseAI | TCCGGA | 1 cut(s) | 851 |
| BseDI | CCNNGG | 1 cut(s) | 938 |
| BseGI | GGATG | 2 cut(s) | 100, 1252 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 890 |
| BseMII | CTCAG | 1 cut(s) | 538 |
| BseNI | ACTGG | 1 cut(s) | 832 |
| BseRI | GAGGAG | 2 cut(s) | 413, 1001 |
| BseSI | GKGCMC | 1 cut(s) | 937 |
| Bsh1236I | CGCG | 1 cut(s) | 280 |
| BshFI | GGCC | 3 cut(s) | 813, 1008, 1314 |
| BshNI | GGYRCC | 2 cut(s) | 880, 934 |
| BsiSI | CCGG | 2 cut(s) | 750, 852 |
| BslFI | GGGAC | 3 cut(s) | 18, 806, 1083 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 890 |
| BsmAI | GTCTC | 2 cut(s) | 98, 193 |
| BsmFI | GGGAC | 3 cut(s) | 18, 806, 1083 |
| BsmI | GAATGC | 2 cut(s) | 169, 331 |
| BsnI | GGCC | 3 cut(s) | 813, 1008, 1314 |
| Bsp1286I | GDGCHC | 1 cut(s) | 937 |
| Bsp13I | TCCGGA | 1 cut(s) | 851 |
| Bsp143I | GATC | 4 cut(s) | 761, 1077, 1129, 1249 |
| BspACI | CCGC | 1 cut(s) | 1083 |
| BspANI | GGCC | 3 cut(s) | 813, 1008, 1314 |
| BspCNI | CTCAG | 1 cut(s) | 537 |
| BspEI | TCCGGA | 1 cut(s) | 851 |
| BspFNI | CGCG | 1 cut(s) | 280 |
| BspHI | TCATGA | 1 cut(s) | 946 |
| BspLI | GGNNCC | 3 cut(s) | 822, 882, 936 |
| BspPI | GGATC | 2 cut(s) | 769, 1124 |
| BspT107I | GGYRCC | 2 cut(s) | 880, 934 |
| BsrI | ACTGG | 1 cut(s) | 832 |
| BssECI | CCNNGG | 1 cut(s) | 938 |
| BssMI | GATC | 4 cut(s) | 761, 1077, 1129, 1249 |
| BssSI | CACGAG | 1 cut(s) | 360 |
| BssT1I | CCWWGG | 1 cut(s) | 938 |
| Bst2BI | CACGAG | 1 cut(s) | 360 |
| Bst4CI | ACNGT | 4 cut(s) | 32, 299, 646, 1213 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 1151 |
| BstBAI | YACGTR | 1 cut(s) | 1323 |
| BstC8I | GCNNGC | 2 cut(s) | 516, 1152 |
| BstDEI | CTNAG | 2 cut(s) | 524, 610 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 888 |
| BstF5I | GGATG | 2 cut(s) | 100, 1252 |
| BstFNI | CGCG | 1 cut(s) | 280 |
| BstH2I | RGCGCY | 1 cut(s) | 620 |
| BstHHI | GCGC | 1 cut(s) | 619 |
| BstKTI | GATC | 4 cut(s) | 764, 1080, 1132, 1252 |
| BstMAI | GTCTC | 2 cut(s) | 98, 193 |
| BstMBI | GATC | 4 cut(s) | 761, 1077, 1129, 1249 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 1151 |
| BstNSI | RCATGY | 1 cut(s) | 1089 |
| BstSFI | CTRYAG | 1 cut(s) | 1170 |
| BstSLI | GKGCMC | 1 cut(s) | 937 |
| BstUI | CGCG | 1 cut(s) | 280 |
| BsuRI | GGCC | 3 cut(s) | 813, 1008, 1314 |
| BtsCI | GGATG | 2 cut(s) | 100, 1252 |
| BtsIMutI | CAGTG | 1 cut(s) | 642 |
| Cac8I | GCNNGC | 2 cut(s) | 516, 1152 |
| CaiI | CAGNNNCTG | 1 cut(s) | 770 |
| CciI | TCATGA | 1 cut(s) | 946 |
| CfoI | GCGC | 1 cut(s) | 619 |
| Cfr13I | GGNCC | 1 cut(s) | 820 |
| CseI | GACGC | 1 cut(s) | 800 |
| Csp6I | GTAC | 1 cut(s) | 831 |
| CviAII | CATG | 5 cut(s) | 248, 386, 947, 975, 1086 |
| CviQI | GTAC | 1 cut(s) | 831 |
| DdeI | CTNAG | 2 cut(s) | 524, 610 |
| DpnI | GATC | 4 cut(s) | 763, 1079, 1131, 1251 |
| DpnII | GATC | 4 cut(s) | 761, 1077, 1129, 1249 |
| EaeI | YGGCCR | 1 cut(s) | 1312 |
| Eco130I | CCWWGG | 1 cut(s) | 938 |
| Eco47I | GGWCC | 1 cut(s) | 820 |
| Eco47III | AGCGCT | 1 cut(s) | 618 |
| Eco57I | CTGAAG | 1 cut(s) | 1155 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 888 |
| EcoO109I | RGGNCCY | 1 cut(s) | 820 |
| EcoT14I | CCWWGG | 1 cut(s) | 938 |
| EcoT22I | ATGCAT | 1 cut(s) | 331 |
| ErhI | CCWWGG | 1 cut(s) | 938 |
| FaeI | CATG | 5 cut(s) | 251, 389, 950, 978, 1089 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 593, 625 |
| FaqI | GGGAC | 3 cut(s) | 18, 806, 1083 |
| FatI | CATG | 5 cut(s) | 247, 385, 946, 974, 1085 |
| FbaI | TGATCA | 1 cut(s) | 1077 |
| FokI | GGATG | 2 cut(s) | 107, 1259 |
| FspBI | CTAG | 6 cut(s) | 216, 620, 801, 897, 939, 981 |
| GlaI | GCGC | 1 cut(s) | 618 |
| HaeII | RGCGCY | 1 cut(s) | 620 |
| HaeIII | GGCC | 3 cut(s) | 813, 1008, 1314 |
| HapII | CCGG | 2 cut(s) | 750, 852 |
| HgaI | GACGC | 1 cut(s) | 800 |
| HhaI | GCGC | 1 cut(s) | 619 |
| Hin1II | CATG | 5 cut(s) | 251, 389, 950, 978, 1089 |
| Hin6I | GCGC | 1 cut(s) | 617 |
| HinP1I | GCGC | 1 cut(s) | 617 |
| HincII | GTYRAC | 1 cut(s) | 421 |
| HindII | GTYRAC | 1 cut(s) | 421 |
| HpaI | GTTAAC | 1 cut(s) | 421 |
| HpaII | CCGG | 2 cut(s) | 750, 852 |
| HphI | GGTGA | 4 cut(s) | 491, 800, 878, 1072 |
| Hpy166II | GTNNAC | 2 cut(s) | 421, 1094 |
| Hpy188I | TCNGA | 3 cut(s) | 42, 63, 1112 |
| Hpy188III | TCNNGA | 7 cut(s) | 24, 585, 777, 852, 947, 1060, 1133 |
| Hpy8I | GTNNAC | 2 cut(s) | 421, 1094 |
| Hpy99I | CGWCG | 1 cut(s) | 1023 |
| HpyAV | CCTTC | 3 cut(s) | 676, 1053, 1281 |
| HpyCH4III | ACNGT | 4 cut(s) | 32, 299, 646, 1213 |
| HpyCH4IV | ACGT | 3 cut(s) | 129, 1021, 1322 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 1151 |
| HpyF3I | CTNAG | 2 cut(s) | 524, 610 |
| HpySE526I | ACGT | 3 cut(s) | 129, 1021, 1322 |
| Hsp92II | CATG | 5 cut(s) | 251, 389, 950, 978, 1089 |
| HspAI | GCGC | 1 cut(s) | 617 |
| Kpn2I | TCCGGA | 1 cut(s) | 851 |
| Ksp22I | TGATCA | 1 cut(s) | 1077 |
| KspAI | GTTAAC | 1 cut(s) | 421 |
| Kzo9I | GATC | 4 cut(s) | 761, 1077, 1129, 1249 |
| LmnI | GCTCC | 3 cut(s) | 307, 400, 614 |
| LweI | GCATC | 1 cut(s) | 643 |
| MaeI | CTAG | 6 cut(s) | 216, 620, 801, 897, 939, 981 |
| MaeII | ACGT | 3 cut(s) | 129, 1021, 1322 |
| MaeIII | GTNAC | 4 cut(s) | 388, 640, 788, 796 |
| MalI | GATC | 4 cut(s) | 763, 1079, 1131, 1251 |
| MboI | GATC | 4 cut(s) | 761, 1077, 1129, 1249 |
| MboII | GAAGA | 4 cut(s) | 962, 1148, 1190, 1296 |
| MfeI | CAATTG | 1 cut(s) | 170 |
| MhlI | GDGCHC | 1 cut(s) | 937 |
| MlsI | TGGCCA | 1 cut(s) | 1314 |
| MluCI | AATT | 6 cut(s) | 110, 170, 731, 925, 1102, 1163 |
| MluNI | TGGCCA | 1 cut(s) | 1314 |
| MlyI | GAGTC | 3 cut(s) | 100, 1226, 1228 |
| Mox20I | TGGCCA | 1 cut(s) | 1314 |
| Mph1103I | ATGCAT | 1 cut(s) | 331 |
| MroI | TCCGGA | 1 cut(s) | 851 |
| MroXI | GAANNNNTTC | 1 cut(s) | 1042 |
| MscI | TGGCCA | 1 cut(s) | 1314 |
| MseI | TTAA | 4 cut(s) | 420, 600, 960, 1206 |
| MslI | CAYNNNNRTG | 1 cut(s) | 975 |
| Msp20I | TGGCCA | 1 cut(s) | 1314 |
| MspI | CCGG | 2 cut(s) | 750, 852 |
| MunI | CAATTG | 1 cut(s) | 170 |
| Mva1269I | GAATGC | 2 cut(s) | 169, 331 |
| MvnI | CGCG | 1 cut(s) | 280 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 1151 |
| NdeII | GATC | 4 cut(s) | 761, 1077, 1129, 1249 |
| NlaIII | CATG | 5 cut(s) | 251, 389, 950, 978, 1089 |
| NlaIV | GGNNCC | 3 cut(s) | 822, 882, 936 |
| NmuCI | GTSAC | 2 cut(s) | 640, 788 |
| NsiI | ATGCAT | 1 cut(s) | 331 |
| NspI | RCATGY | 1 cut(s) | 1089 |
| OliI | CACNNNNGTG | 1 cut(s) | 975 |
| PagI | TCATGA | 1 cut(s) | 946 |
| PcsI | WCGNNNNNNNCGW | 2 cut(s) | 277, 499 |
| PctI | GAATGC | 2 cut(s) | 169, 331 |
| PdmI | GAANNNNTTC | 1 cut(s) | 1042 |
| PfeI | GAWTC | 8 cut(s) | 20, 58, 64, 581, 773, 848, 943, 1063 |
| PleI | GAGTC | 3 cut(s) | 100, 1225, 1228 |
| PpsI | GAGTC | 3 cut(s) | 100, 1225, 1228 |
| Ppu21I | YACGTR | 1 cut(s) | 1323 |
| PpuMI | RGGWCCY | 1 cut(s) | 820 |
| PsiI | TTATAA | 1 cut(s) | 140 |
| Psp1406I | AACGTT | 1 cut(s) | 129 |
| Psp5II | RGGWCCY | 1 cut(s) | 820 |
| PspN4I | GGNNCC | 3 cut(s) | 822, 882, 936 |
| PspPI | GGNCC | 1 cut(s) | 820 |
| PspPPI | RGGWCCY | 1 cut(s) | 820 |
| PstNI | CAGNNNCTG | 1 cut(s) | 770 |
| RsaI | GTAC | 1 cut(s) | 832 |
| RsaNI | GTAC | 1 cut(s) | 831 |
| RseI | CAYNNNNRTG | 1 cut(s) | 975 |
| SaqAI | TTAA | 4 cut(s) | 420, 600, 960, 1206 |
| Sau3AI | GATC | 4 cut(s) | 761, 1077, 1129, 1249 |
| Sau96I | GGNCC | 1 cut(s) | 820 |
| SchI | GAGTC | 3 cut(s) | 100, 1226, 1228 |
| SduI | GDGCHC | 1 cut(s) | 937 |
| SfaNI | GCATC | 1 cut(s) | 643 |
| SfcI | CTRYAG | 1 cut(s) | 1170 |
| SinI | GGWCC | 1 cut(s) | 820 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 975 |
| SmlI | CTYRAG | 1 cut(s) | 815 |
| SmoI | CTYRAG | 1 cut(s) | 815 |
| Sse9I | AATT | 6 cut(s) | 110, 170, 731, 925, 1102, 1163 |
| SsiI | CCGC | 1 cut(s) | 1083 |
| SspI | AATATT | 1 cut(s) | 956 |
| SspMI | CTAG | 6 cut(s) | 216, 620, 801, 897, 939, 981 |
| StyI | CCWWGG | 1 cut(s) | 938 |
| TaaI | ACNGT | 4 cut(s) | 32, 299, 646, 1213 |
| TaiI | ACGT | 3 cut(s) | 132, 1024, 1325 |
| TaqI | TCGA | 4 cut(s) | 56, 493, 584, 776 |
| TasI | AATT | 6 cut(s) | 110, 170, 731, 925, 1102, 1163 |
| TfiI | GAWTC | 8 cut(s) | 20, 58, 64, 581, 773, 848, 943, 1063 |
| Tru1I | TTAA | 4 cut(s) | 420, 600, 960, 1206 |
| Tru9I | TTAA | 4 cut(s) | 420, 600, 960, 1206 |
| TscAI | CASTG | 1 cut(s) | 649 |
| TseFI | GTSAC | 2 cut(s) | 640, 788 |
| Tsp45I | GTSAC | 2 cut(s) | 640, 788 |
| TspDTI | ATGAA | 7 cut(s) | 111, 176, 236, 963, 980, 1088, 1176 |
| TspGWI | ACGGA | 2 cut(s) | 491, 593 |
| TspRI | CASTG | 1 cut(s) | 649 |
| VpaK11BI | GGWCC | 1 cut(s) | 820 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 888 |
| XapI | RAATTY | 1 cut(s) | 731 |
| XceI | RCATGY | 1 cut(s) | 1089 |
| XmaJI | CCTAGG | 1 cut(s) | 938 |
| XmnI | GAANNNNTTC | 1 cut(s) | 1042 |
| XspI | CTAG | 6 cut(s) | 216, 620, 801, 897, 939, 981 |
| Zsp2I | ATGCAT | 1 cut(s) | 331 |