Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1D

Orthogroup ID

OG0007831

Physical Location & Seq

Genomic Coordinates Reverse (-)

46099270 .. 46111622

Gene Structure 12353 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1DG246600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3543 bp

ATGGATCTTGCGTGTAGTTTTCGGCAGCCGAAGGTGTTGTGTGGAAGTGAAGGGGGCAGTTCTAGGAAGTTGAATGGGGTTGATTCGTATGTTTTGTTTGGGAGTAGAGATGGTGGGTGTAGCTTTCGGGGTAATTCGAGAGTTGTTGTGAAAGCGTGTTTGGGGAAGAAGGTGAAGAGGAGTGTGTGTTTTAATGGTTGTAGGGTTTCGCGTTTGGGCTCTAGAGAAAATGCTGATGATCGTTGCTGGAGTTTGAATCTGAAAACGCCTTTGTTTCGTAGCTCTGGTAATGTTCTTAAAGGGTCGAGAGTGGTTTGGTGGTCACGGTGTCAGAGTAACGACTCATTAGCGTATGTCAATGGGAATGGTCGGAATGTAGAGTTTGTGGAAGGTCATGATGAGAGCTCAGGAGTTGCGCCCATCCATGATGATGAATTGAGCAGTTCCACAAAAGAGGAGGGTGATAAAGACAAAATAGATGAATCAGAGGCATGTACTGTGGATGAATTGAGGGAGTTGCTGCAGAATGCCATGAAAGAATTGGAAGTTGCACGTTGTAATAGTGCCATATTTGAAGAAAAGGCTCAGAAAATATCAGAAGCTGCGATTTCCCTGCAGGATGAAGCAGCAACTGCTTGGAATGATGTTAATTCAGCCCTTGACACTATTCAAGAGATTGTGAATGAAGAGGGGATTGCAAAAGAAGCTGTTCAGAAAGCAACAATGACTCTTTCATTAGCAGAGGCAAGGCTTCAGGTGGGAGCAGAATCTTTGGAGGTTGCAAAAAAGGGGACCGGTTCGCTGGATGCTTCACGAGAGAGTGATGGGGAACATGATTCTGAAGACGATGAAAAAGCATTTTTGGTTGTGCAAGAAGAAATTCGGGAATGCCAGGCGAATTTGGCCAGCTGTGAGTCAGAATTAAGGCGCTTACAGAGTAAAAAAGAGGAGTTGCAGAAGCAAGTGAACAGGTTGAATGAAGTTGCAGAGAAAGCACAGCTGAATGCTTTGAAAGCAGAGGAGGATGTAACAAATATAATGCTATTAGCAGAGCAAGCTGTTGCTTTTGAACTTGAGGCAGCACAATGTGTAAATGATGCAGAGATTGCATTACAAAGAGCAGAGAAATCTCTCTCCAATTCAACTCTTGATACCATAGAAAACAACCAGGGACAGGTGTTGAATGATGATGCTGCTGTCGAGGAGGAGGAGAAGGTAGTTCAAGGAAGTTCTGCTAATATCATTACTGAAAAGGATAAAGATCTGTTAATTGATGGTGATTCGTCTGCTATCAAGCCCTTACCAGATAGCCCTTCAGACAGAATCACTCAGAGTGTTGAAGAAACAACCCAAACTGCTGATCTAAGTGATCATGAGAAACAAAAGATAGGCGTAGATTCTTTTAAAGAAGCTGAAGTAGAGACTGAAAAGTCAAAGAATGTGGTTCAAACTAAAAAGCAGGAAACTCAGAAGGAATCGAGTAGGGAGAGTTCAACCTCAAATGCACCCAAGACAATAGTGAAGAAATCTTCTCGTTTCATTCCTGCATCTTTCTTTTCTTCTGAAGATGGGACTGAATTCACACCATCATCAGTGTTCCAGGGTCTGTTGGAGTATGCAAGGAAGCAGTGGCCCAAGTTGGTTGTTGGGATATTCCTATGTGGCATAGGGCTCACCTTTTACACTAATCGGGCAGAAAGAGCCACTCAACTGATACAACAGCCAGATGTAATTACCACTAGTTTTGAAGAAGTTTCCTCAACTGCGAGGCCTCTAGTTCAACAATTACGTAAACTTCCTAAGAGAATTAAAAGTCTAATTGATATGTTGCCTCATCAAGAGGTGAATGAGGAGGAAGCTTCCCTCTTTGACATGTTATGGTTATTGCTAGCAAGTGTGATATTTGTGCCTGTATTCCAGAAGATTCCTGGAGGTAGTCCTGTTCTTGGGTACTTGGCAGCAGGTATCTTAATTGGGCCTTATGGCCTCTCGATTATTCGTCATGTACATGGAACAAAGGCAATTGCCGAATTTGGTGTTGTTTTCTTACTGTTCAACATTGGCCTTGAGCTCTCTGTTGAAAGGTTGAGTTCCATGAAGAAATATGTATTTGGATTAGGCTCTGCTCAGGTTCTAGTCACAGCTGTTGTAGTTGGCTTGGTTGCTCATTTTGCTTGTGGGCTGCCAGGCCCTGCTGCAATTGTAATTGGCAATGGTCTAGCTTTATCATCCACTGCAGTTGTGCTGCAGGTCTTGCAAGAGCGGGGTGAGAGCACGTCACGCCATGGTCGTGCAACCTTTTCTGTTTTACTGTTCCAGGATTTGGCTGTTGTGGTTTTGCTAATACTTATACCTCTCATTTCACCAAATTCATCCAAAGGAGGGATTGGTTTCCAAGCTATTGCTGAAGCTCTTGGACTTGCTGCTGTAAAGGCAGCAGTTGCCATCACAGCCATTATTGCTGGTGGACGCTTGTTGCTTCGACCAATTTATAGGCAAATTGCAGAAAATCAAAACGCAGAAATATTTTCTGCCAATACATTGCTTGTTATTCTGGGAACAAGTCTTCTCACTGCCAGGGCTGGACTATCCATGGCATTGGGAGCATTTTTGGCTGGTTTGCTTCTTGCAGAAACTGAATTTTCCTTACAGGTTGAGTCGGATATTGCTCCATATCGTGGCCTTCTATTGGGTCTCTTTTTCATGACGGTTGGAATGTCTATTGATCCAAAACTTCTTGTTTCGAACTTCCCCATTATAATTGGATCATTAGGACTTCTACTTGTTGGCAAATGCTTATTGGTTGCTTTAATAGGCAAACTATCTGGCATTTCAATAATATCTGCAATAAGAGTTGGTCTTCTTCTTGCCCCTGGTGGAGAATTTGCATTTGTTGCTTTTGGTGAAGCTGTTAATCAGGGAATAATGTCTCATCAACTATCTTCTTTGCTCTTTCTTGTCGTTGGAGTTTCAATGGCCCTCACACCATGGCTAGCTGCTGGAGGACAGTTAATTGCATCTCGTTTTGAGCTGCATGATGTTCGAAGTTTACTGCCCGATGAGAGTGAGACAGATGATTTACAAGATCATATAATCATTTGCGGATTTGGACGAGTTGGTCAGATAATTGCACAGCTTCTTTCAGAGCGCCTAATTCCATTTGTAGCTCTTGATGTGAGGAGTGATAGAGTGACAGTTGGACGTTCCCTGGACATTCCGGTCTATTTTGGAGACGCCGGTAGTCGAGAGGTGCTCCACAAAGTTGGTGCTCACAGAGCATGCGCTGCAGCAATAACGTTAGATTCCCCTGGTGCAAACTATAGAACTGTTTGGGCTCTGAGCAAGTATTTCCCCAACGTGAAAACTTTTGTCCGTGCTCATGATGTTGACCACGGTCTTAATTTGGAGAAGGCTGGGGCCACAGCGGTTGTCCCAGAGACCTTGGAACCGAGTCTACAGTTGGCAGCTGCTGTTCTTGCTCAGGTAAATGGTTTATTGTCAGTGTCTGATATAACTATCACTGCGGCATATGTCACAACATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005451 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006810 GO:0006811 GO:0006812 GO:0006813 GO:0006996 GO:0008150 GO:0008324 GO:0009507 GO:0009526 GO:0009536 GO:0009657 GO:0009658 GO:0009941 GO:0009987 GO:0010109 GO:0015075 GO:0015077 GO:0015078 GO:0015079 GO:0015291 GO:0015297 GO:0015298 GO:0015299 GO:0015318 GO:0015386 GO:0015491 GO:0015672 GO:0016020 GO:0016043 GO:0019222 GO:0022804 GO:0022821 GO:0022857 GO:0022890 GO:0030001 GO:0031090 GO:0031323 GO:0031967 GO:0031969 GO:0031975 GO:0034220 GO:0042170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046873 GO:0050789 GO:0050794 GO:0051179 GO:0051234 GO:0055085 GO:0065007 GO:0071804 GO:0071805 GO:0071840 GO:0098655 GO:0098660 GO:0098662 GO:0099516 GO:1902600

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MutS_I MutS_II MutS_III MutS_V Na_H_Exchanger TrkA_N

Protein Analysis

1180

Amino Acids

127.02

Weight (kDa)

5.11

Isoelectric Point (pI)

39.74

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Na_H_Exchanger	PF00999	632 - 999	1.5e-57	Sodium/hydrogen exchanger, transmembrane
TrkA_N	PF02254	1031 - 1144	2.8e-20	TrkA-N domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0007831)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G00630 AT4G00630
fragaria_vesca	FvH4_7g13660 FvH4_7g13660 FvH4_7g13660 FvH4_7g13660 FvH4_7g13660
malus_domestica	MD01G1053700.v1.1 MD07G1141400.v1.1
prunus_persica	Prupe.2G162700_v2.0.a1 Prupe.2G162700_v2.0.a1
pyrus_communis	pycom01g07930 pycom07g14030
rosa_chinensis	RchiOBHm_Chr1g0353741
rosa_laevigata	RLG00000028262
rosa_multiflora	Rmu_sc0005947.1_g000021
rosa_roxburghii	Rroxscaffold_4G00301700
rosa_rugosa	Rorug01G0237300 Rorug01G0237300
rosa_samantha	Rh1AG249500 Rh1BG219600 Rh1CG232200 Rh1DG246600
rosa_wichuraiana	Rw1G021770

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	2759
AasI	GACNNNNNNGTC	3 cut(s)	1429, 3117, 3218
Acc36I	ACCTGC	2 cut(s)	1952, 2239
AccB7I	CCANNNNNTGG	2 cut(s)	2323, 2678
AccBSI	CCGCTC	1 cut(s)	2263
AccI	GTMKAC	1 cut(s)	3454
AccII	CGCG	1 cut(s)	211
AciI	CCGC	4 cut(s)	2263, 3102, 3425, 3524
AclI	AACGTT	1 cut(s)	3296
AclWI	GGATC	3 cut(s)	12, 2720, 2773
AcoI	YGGCCR	1 cut(s)	903
AcsI	RAATTY	7 cut(s)	879, 898, 1577, 2030, 2368, 2639, 2882
AcuI	CTGAAG	6 cut(s)	737, 861, 1299, 1434, 1584, 2427
AcyI	GRCGYC	1 cut(s)	3234
AdeI	CACNNNGTG	1 cut(s)	1088
AfaI	GTAC	3 cut(s)	496, 1952, 2007
AfiI	CCNNNNNNNGG	6 cut(s)	1174, 1946, 2323, 2382, 2678, 2689
AflIII	ACRYGT	1 cut(s)	1872
AgeI	ACCGGT	1 cut(s)	794
AhlI	ACTAGT	1 cut(s)	1739
AjiI	CACGTC	1 cut(s)	2277
AjuI	GAANNNNNNNTTGG	2 cut(s)	143, 175
Alw21I	GWGCWC	6 cut(s)	407, 2073, 2276, 3255, 3271, 3379
Alw26I	GTCTC	6 cut(s)	1415, 2699, 2934, 3062, 3225, 3431
AlwI	GGATC	3 cut(s)	12, 2720, 2773
AlwNI	CAGNNNCTG	7 cut(s)	602, 632, 1606, 2192, 2636, 3470, 3506
ApoI	RAATTY	7 cut(s)	879, 898, 1577, 2030, 2368, 2639, 2882
AsiGI	ACCGGT	1 cut(s)	794
Asp700I	GAANNNNTTC	2 cut(s)	708, 879
AspLEI	GCGC	4 cut(s)	418, 930, 3150, 3284
AspS9I	GGNCC	6 cut(s)	792, 1632, 1976, 2189, 2977, 3417
AsuHPI	GGTGA	8 cut(s)	184, 473, 1289, 1666, 1855, 2279, 2355, 2915
AsuII	TTCGAA	2 cut(s)	2744, 3043
AsuNHI	GCTAGC	2 cut(s)	1888, 2992
AvaII	GGWCC	1 cut(s)	792
BalI	TGGCCA	1 cut(s)	905
BanII	GRGCYC	5 cut(s)	221, 407, 1674, 2073, 3337
BauI	CACGAG	1 cut(s)	813
BbsI	GAAGAC	3 cut(s)	849, 2558, 2852
Bbv12I	GWGCWC	6 cut(s)	407, 2073, 2276, 3255, 3271, 3379
BccI	CCATC	7 cut(s)	104, 428, 818, 1268, 1562, 1594, 2453
BcgI	CGANNNNNNTGC	4 cut(s)	595, 629, 3023, 3057
BclI	TGATCA	1 cut(s)	1369
BcoDI	GTCTC	6 cut(s)	1415, 2699, 2934, 3062, 3225, 3431
BcuI	ACTAGT	1 cut(s)	1739
BfaI	CTAG	8 cut(s)	63, 222, 1740, 1775, 1889, 2135, 2219, 2993
BfmI	CTRYAG	7 cut(s)	521, 614, 2235, 2246, 3285, 3319, 3455
BfoI	RGCGCY	2 cut(s)	931, 3151
BfuAI	ACCTGC	2 cut(s)	1952, 2239
BglII	AGATCT	1 cut(s)	1261
Bme18I	GGWCC	1 cut(s)	792
BmgBI	CACGTC	1 cut(s)	2277
BmgT120I	GGNCC	6 cut(s)	792, 1632, 1976, 2189, 2977, 3417
BmiI	GGNNCC	3 cut(s)	793, 3418, 3447
BmsI	GCATC	5 cut(s)	796, 1087, 1180, 1556, 3026
BmtI	GCTAGC	2 cut(s)	1892, 2996
BoxI	GACNNNNGTC	1 cut(s)	3393
BpiI	GAAGAC	3 cut(s)	849, 2558, 2852
BplI	GAGNNNNNCTC	2 cut(s)	3237, 3269
BpmI	CTGGAG	3 cut(s)	268, 1950, 3021
Bpu10I	CCTNAGC	3 cut(s)	406, 2127, 3480
Bpu14I	TTCGAA	2 cut(s)	2744, 3043
BpuEI	CTTGAG	2 cut(s)	1094, 2087
BsaAI	YACGTR	1 cut(s)	1790
BsaBI	GATNNNNATC	1 cut(s)	1260
BsaHI	GRCGYC	1 cut(s)	3234
BsaI	GGTCTC	2 cut(s)	2699, 3431
BsaWI	WCCGGW	2 cut(s)	794, 3217
BsaXI	ACNNNNNCTCC	2 cut(s)	172, 202
Bsc4I	CCNNNNNNNGG	6 cut(s)	1174, 1946, 2323, 2382, 2678, 2689
Bse118I	RCCGGY	2 cut(s)	794, 3236
Bse3DI	GCAATG	2 cut(s)	2218, 2540
Bse8I	GATNNNNATC	1 cut(s)	1260
BseGI	GGATG	7 cut(s)	420, 508, 625, 811, 1030, 2228, 2372
BseJI	GATNNNNATC	1 cut(s)	1260
BseLI	CCNNNNNNNGG	6 cut(s)	1174, 1946, 2323, 2382, 2678, 2689
BseMI	GCAATG	2 cut(s)	2218, 2540
BseMII	CTCAG	7 cut(s)	420, 599, 1343, 1481, 2141, 3329, 3494
BseRI	GAGGAG	9 cut(s)	193, 470, 962, 1034, 1217, 1220, 1223, 1865, 3193
BseYI	CCCAGC	1 cut(s)	3413
Bsh1236I	CGCG	1 cut(s)	211
BshTI	ACCGGT	1 cut(s)	794
BsiHKAI	GWGCWC	6 cut(s)	407, 2073, 2276, 3255, 3271, 3379
BsiSI	CCGG	3 cut(s)	795, 3218, 3237
BslFI	GGGAC	4 cut(s)	805, 1185, 1585, 3416
BslI	CCNNNNNNNGG	6 cut(s)	1174, 1946, 2323, 2382, 2678, 2689
BsmAI	GTCTC	6 cut(s)	1415, 2699, 2934, 3062, 3225, 3431
BsmBI	CGTCTC	1 cut(s)	3225
BsmFI	GGGAC	4 cut(s)	805, 1185, 1585, 3416
BsmI	GAATGC	3 cut(s)	532, 893, 1009
Bso31I	GGTCTC	2 cut(s)	2699, 3431
Bsp119I	TTCGAA	2 cut(s)	2744, 3043
Bsp1286I	GDGCHC	9 cut(s)	221, 407, 1674, 2073, 2276, 3255, 3271, 3337, 3379
Bsp1407I	TGTACA	1 cut(s)	2005
Bsp143I	GATC	8 cut(s)	4, 238, 1261, 1360, 1369, 2725, 2765, 3085
Bsp19I	CCATGG	3 cut(s)	2284, 2592, 2987
BspACI	CCGC	4 cut(s)	2263, 3102, 3425, 3524
BspCNI	CTCAG	7 cut(s)	419, 598, 1342, 1480, 2140, 3330, 3493
BspFNI	CGCG	1 cut(s)	211
BspHI	TCATGA	4 cut(s)	394, 1372, 2703, 3379
BspLI	GGNNCC	3 cut(s)	793, 3418, 3447
BspMAI	CTGCAG	5 cut(s)	525, 618, 2239, 2250, 3289
BspMI	ACCTGC	2 cut(s)	1952, 2239
BspOI	GCTAGC	2 cut(s)	1892, 2996
BspPI	GGATC	3 cut(s)	12, 2720, 2773
BspT104I	TTCGAA	2 cut(s)	2744, 3043
BspTNI	GGTCTC	2 cut(s)	2699, 3431
BsrBI	CCGCTC	1 cut(s)	2263
BsrDI	GCAATG	2 cut(s)	2218, 2540
BsrFI	RCCGGY	2 cut(s)	794, 3236
BsrGI	TGTACA	1 cut(s)	2005
BssAI	RCCGGY	2 cut(s)	794, 3236
BssMI	GATC	8 cut(s)	4, 238, 1261, 1360, 1369, 2725, 2765, 3085
BssNI	GRCGYC	1 cut(s)	3234
BssSI	CACGAG	1 cut(s)	813
BssT1I	CCWWGG	4 cut(s)	2284, 2592, 2987, 3441
Bst2BI	CACGAG	1 cut(s)	813
Bst6I	CTCTTC	2 cut(s)	170, 681
BstACI	GRCGYC	1 cut(s)	3234
BstAPI	GCANNNNNTGC	6 cut(s)	632, 1106, 2254, 2441, 2894, 3284
BstAUI	TGTACA	1 cut(s)	2005
BstBAI	YACGTR	1 cut(s)	1790
BstBI	TTCGAA	2 cut(s)	2744, 3043
BstC8I	GCNNGC	5 cut(s)	907, 1056, 1890, 2994, 3280
BstDEI	CTNAG	9 cut(s)	406, 585, 1329, 1364, 1467, 1800, 2127, 3338, 3480
BstDSI	CCRYGG	4 cut(s)	2284, 2592, 2987, 3391
BstF5I	GGATG	7 cut(s)	420, 508, 625, 811, 1030, 2228, 2372
BstFNI	CGCG	1 cut(s)	211
BstH2I	RGCGCY	2 cut(s)	931, 3151
BstHHI	GCGC	4 cut(s)	418, 930, 3150, 3284
BstKTI	GATC	8 cut(s)	7, 241, 1264, 1363, 1372, 2728, 2768, 3088
BstMAI	GTCTC	6 cut(s)	1415, 2699, 2934, 3062, 3225, 3431
BstMBI	GATC	8 cut(s)	4, 238, 1261, 1360, 1369, 2725, 2765, 3085
BstNSI	RCATGY	3 cut(s)	495, 1876, 3282
BstPAI	GACNNNNGTC	1 cut(s)	3393
BstSFI	CTRYAG	7 cut(s)	521, 614, 2235, 2246, 3285, 3319, 3455
BstSNI	TACGTA	1 cut(s)	1790
BstUI	CGCG	1 cut(s)	211
BstV2I	GAAGAC	3 cut(s)	849, 2558, 2852
BstX2I	RGATCY	2 cut(s)	4, 1261
BstXI	CCANNNNNNTGG	2 cut(s)	2599, 3263
BstYI	RGATCY	2 cut(s)	4, 1261
BtgI	CCRYGG	4 cut(s)	2284, 2592, 2987, 3391
BtrI	CACGTC	1 cut(s)	2277
BtsCI	GGATG	7 cut(s)	420, 508, 625, 811, 1030, 2228, 2372
BtsI	GCAGTG	4 cut(s)	1634, 2232, 2571, 3519
BtsIMutI	CAGTG	6 cut(s)	1599, 1634, 2232, 2571, 3507, 3519
BveI	ACCTGC	2 cut(s)	1952, 2239
Cac8I	GCNNGC	5 cut(s)	907, 1056, 1890, 2994, 3280
CaiI	CAGNNNCTG	7 cut(s)	602, 632, 1606, 2192, 2636, 3470, 3506
CciI	TCATGA	4 cut(s)	394, 1372, 2703, 3379
CfoI	GCGC	4 cut(s)	418, 930, 3150, 3284
Cfr10I	RCCGGY	2 cut(s)	794, 3236
Cfr13I	GGNCC	6 cut(s)	792, 1632, 1976, 2189, 2977, 3417
CseI	GACGC	2 cut(s)	2478, 3242
Csp6I	GTAC	3 cut(s)	495, 1951, 2006
CspAI	ACCGGT	1 cut(s)	794
CspCI	CAANNNNNGTGG	8 cut(s)	1422, 1457, 1726, 1761, 2221, 2256, 3409, 3444
CviQI	GTAC	3 cut(s)	495, 1951, 2006
DdeI	CTNAG	9 cut(s)	406, 585, 1329, 1364, 1467, 1800, 2127, 3338, 3480
DpnI	GATC	8 cut(s)	6, 240, 1263, 1362, 1371, 2727, 2767, 3087
DpnII	GATC	8 cut(s)	4, 238, 1261, 1360, 1369, 2725, 2765, 3085
DraI	TTTAAA	1 cut(s)	1405
DraIII	CACNNNGTG	1 cut(s)	1088
DrdI	GACNNNNNNGTC	3 cut(s)	1429, 3117, 3218
DseDI	GACNNNNNNGTC	3 cut(s)	1429, 3117, 3218
EaeI	YGGCCR	1 cut(s)	903
Eam1104I	CTCTTC	2 cut(s)	170, 681
EarI	CTCTTC	2 cut(s)	170, 681
Ecl136II	GAGCTC	2 cut(s)	405, 2071
Eco105I	TACGTA	1 cut(s)	1790
Eco130I	CCWWGG	4 cut(s)	2284, 2592, 2987, 3441
Eco147I	AGGCCT	1 cut(s)	1771
Eco24I	GRGCYC	5 cut(s)	221, 407, 1674, 2073, 3337
Eco31I	GGTCTC	2 cut(s)	2699, 3431
Eco47I	GGWCC	1 cut(s)	792
Eco53kI	GAGCTC	2 cut(s)	405, 2071
Eco57I	CTGAAG	6 cut(s)	737, 861, 1299, 1434, 1584, 2427
EcoICRI	GAGCTC	2 cut(s)	405, 2071
EcoO109I	RGGNCCY	1 cut(s)	2189
EcoRI	GAATTC	1 cut(s)	1577
EcoT14I	CCWWGG	4 cut(s)	2284, 2592, 2987, 3441
EcoT38I	GRGCYC	5 cut(s)	221, 407, 1674, 2073, 3337
ErhI	CCWWGG	4 cut(s)	2284, 2592, 2987, 3441
Esp3I	CGTCTC	1 cut(s)	3225
FaqI	GGGAC	4 cut(s)	805, 1185, 1585, 3416
FauI	CCCGC	1 cut(s)	2256
FauNDI	CATATG	1 cut(s)	3529
FbaI	TGATCA	1 cut(s)	1369
FblI	GTMKAC	1 cut(s)	3454
FokI	GGATG	7 cut(s)	407, 515, 632, 818, 1037, 2215, 2359
FriOI	GRGCYC	5 cut(s)	221, 407, 1674, 2073, 3337
FspBI	CTAG	8 cut(s)	63, 222, 1740, 1775, 1889, 2135, 2219, 2993
GlaI	GCGC	4 cut(s)	417, 929, 3149, 3283
GsaI	CCCAGC	1 cut(s)	3417
GsuI	CTGGAG	3 cut(s)	268, 1950, 3021
HaeII	RGCGCY	2 cut(s)	931, 3151
HapII	CCGG	3 cut(s)	795, 3218, 3237
HgaI	GACGC	2 cut(s)	2478, 3242
HhaI	GCGC	4 cut(s)	418, 930, 3150, 3284
Hin1I	GRCGYC	1 cut(s)	3234
Hin6I	GCGC	4 cut(s)	416, 928, 3148, 3282
HinP1I	GCGC	4 cut(s)	416, 928, 3148, 3282
HincII	GTYRAC	1 cut(s)	3388
HindII	GTYRAC	1 cut(s)	3388
HindIII	AAGCTT	1 cut(s)	1857
HpaII	CCGG	3 cut(s)	795, 3218, 3237
HphI	GGTGA	8 cut(s)	184, 473, 1289, 1666, 1855, 2279, 2355, 2915
Hpy166II	GTNNAC	6 cut(s)	967, 1793, 2468, 3050, 3388, 3455
Hpy8I	GTNNAC	6 cut(s)	967, 1793, 2468, 3050, 3388, 3455
HpyAV	CCTTC	9 cut(s)	25, 44, 163, 383, 1207, 1323, 1465, 2693, 3403
HpyCH4IV	ACGT	6 cut(s)	553, 1789, 2276, 3202, 3296, 3357
HpyF3I	CTNAG	9 cut(s)	406, 585, 1329, 1364, 1467, 1800, 2127, 3338, 3480
HpySE526I	ACGT	6 cut(s)	553, 1789, 2276, 3202, 3296, 3357
Hsp92I	GRCGYC	1 cut(s)	3234
HspAI	GCGC	4 cut(s)	416, 928, 3148, 3282
Ksp22I	TGATCA	1 cut(s)	1369
Kzo9I	GATC	8 cut(s)	4, 238, 1261, 1360, 1369, 2725, 2765, 3085
LmnI	GCTCC	4 cut(s)	761, 2603, 2674, 3258
LweI	GCATC	5 cut(s)	796, 1087, 1180, 1556, 3026
MaeI	CTAG	8 cut(s)	63, 222, 1740, 1775, 1889, 2135, 2219, 2993
MaeII	ACGT	6 cut(s)	553, 1789, 2276, 3202, 3296, 3357
MaeIII	GTNAC	7 cut(s)	321, 335, 1027, 2137, 2277, 3190, 3532
MalI	GATC	8 cut(s)	6, 240, 1263, 1362, 1371, 2727, 2767, 3087
MbiI	CCGCTC	1 cut(s)	2263
MboI	GATC	8 cut(s)	4, 238, 1261, 1360, 1369, 2725, 2765, 3085
MfeI	CAATTG	2 cut(s)	2022, 2199
MflI	RGATCY	2 cut(s)	4, 1261
MhlI	GDGCHC	9 cut(s)	221, 407, 1674, 2073, 2276, 3255, 3271, 3337, 3379
MlsI	TGGCCA	1 cut(s)	905
MluNI	TGGCCA	1 cut(s)	905
MlyI	GAGTC	5 cut(s)	335, 721, 923, 2666, 3460
MmeI	TCCRAC	6 cut(s)	350, 1590, 2640, 2692, 2944, 3178
Mox20I	TGGCCA	1 cut(s)	905
MroXI	GAANNNNTTC	2 cut(s)	708, 879
MscI	TGGCCA	1 cut(s)	905
MslI	CAYNNNNRTG	3 cut(s)	429, 2007, 2289
Msp20I	TGGCCA	1 cut(s)	905
MspA1I	CMGCKG	5 cut(s)	909, 1000, 2144, 3425, 3467
MspI	CCGG	3 cut(s)	795, 3218, 3237
MunI	CAATTG	2 cut(s)	2022, 2199
Mva1269I	GAATGC	3 cut(s)	532, 893, 1009
MvnI	CGCG	1 cut(s)	211
NcoI	CCATGG	3 cut(s)	2284, 2592, 2987
NdeI	CATATG	1 cut(s)	3529
NdeII	GATC	8 cut(s)	4, 238, 1261, 1360, 1369, 2725, 2765, 3085
NheI	GCTAGC	2 cut(s)	1888, 2992
NlaIV	GGNNCC	3 cut(s)	793, 3418, 3447
NmuCI	GTSAC	5 cut(s)	321, 2137, 2277, 3190, 3532
NspI	RCATGY	3 cut(s)	495, 1876, 3282
NspV	TTCGAA	2 cut(s)	2744, 3043
PaeI	GCATGC	1 cut(s)	3282
PagI	TCATGA	4 cut(s)	394, 1372, 2703, 3379
PceI	AGGCCT	1 cut(s)	1771
PciI	ACATGT	1 cut(s)	1872
PcsI	WCGNNNNNNNCGW	1 cut(s)	2287
PctI	GAATGC	3 cut(s)	532, 893, 1009
PdmI	GAANNNNTTC	2 cut(s)	708, 879
PflMI	CCANNNNNTGG	2 cut(s)	2323, 2678
PfoI	TCCNGGA	2 cut(s)	1927, 2316
PinAI	ACCGGT	1 cut(s)	794
PleI	GAGTC	5 cut(s)	335, 721, 922, 2665, 3459
PpsI	GAGTC	5 cut(s)	335, 721, 922, 2665, 3459
Ppu21I	YACGTR	1 cut(s)	1790
PscI	ACATGT	1 cut(s)	1872
PshAI	GACNNNNGTC	1 cut(s)	3393
PsiI	TTATAA	1 cut(s)	2759
Psp124BI	GAGCTC	2 cut(s)	407, 2073
Psp1406I	AACGTT	1 cut(s)	3296
PspFI	CCCAGC	1 cut(s)	3413
PspN4I	GGNNCC	3 cut(s)	793, 3418, 3447
PspPI	GGNCC	6 cut(s)	792, 1632, 1976, 2189, 2977, 3417
PsrI	GAACNNNNNNTAC	4 cut(s)	1474, 1506, 3438, 3470
PstI	CTGCAG	5 cut(s)	525, 618, 2239, 2250, 3289
PstNI	CAGNNNCTG	7 cut(s)	602, 632, 1606, 2192, 2636, 3470, 3506
PsuI	RGATCY	2 cut(s)	4, 1261
PvuII	CAGCTG	4 cut(s)	909, 1000, 2144, 3467
RsaI	GTAC	3 cut(s)	496, 1952, 2007
RsaNI	GTAC	3 cut(s)	495, 1951, 2006
RseI	CAYNNNNRTG	3 cut(s)	429, 2007, 2289
SacI	GAGCTC	2 cut(s)	407, 2073
Sau3AI	GATC	8 cut(s)	4, 238, 1261, 1360, 1369, 2725, 2765, 3085
Sau96I	GGNCC	6 cut(s)	792, 1632, 1976, 2189, 2977, 3417
SbfI	CCTGCAGG	1 cut(s)	618
SchI	GAGTC	5 cut(s)	335, 721, 923, 2666, 3460
SdaI	CCTGCAGG	1 cut(s)	618
SduI	GDGCHC	9 cut(s)	221, 407, 1674, 2073, 2276, 3255, 3271, 3337, 3379
SfaNI	GCATC	5 cut(s)	796, 1087, 1180, 1556, 3026
SfcI	CTRYAG	7 cut(s)	521, 614, 2235, 2246, 3285, 3319, 3455
SfuI	TTCGAA	2 cut(s)	2744, 3043
SinI	GGWCC	1 cut(s)	792
SmiMI	CAYNNNNRTG	3 cut(s)	429, 2007, 2289
SmlI	CTYRAG	2 cut(s)	1073, 2066
SmoI	CTYRAG	2 cut(s)	1073, 2066
SnaBI	TACGTA	1 cut(s)	1790
SpeI	ACTAGT	1 cut(s)	1739
SphI	GCATGC	1 cut(s)	3282
Sse8387I	CCTGCAGG	1 cut(s)	618
SseBI	AGGCCT	1 cut(s)	1771
SsiI	CCGC	4 cut(s)	2263, 3102, 3425, 3524
SspI	AATATT	1 cut(s)	2526
SspMI	CTAG	8 cut(s)	63, 222, 1740, 1775, 1889, 2135, 2219, 2993
SstI	GAGCTC	2 cut(s)	407, 2073
StuI	AGGCCT	1 cut(s)	1771
StyI	CCWWGG	4 cut(s)	2284, 2592, 2987, 3441
TaiI	ACGT	6 cut(s)	556, 1792, 2279, 3205, 3299, 3360
TaqI	TCGA	9 cut(s)	137, 305, 1200, 1478, 1991, 2482, 2744, 3043, 3244
TatI	WGTACW	2 cut(s)	494, 2005
TauI	GCSGC	1 cut(s)	3527
TscAI	CASTG	6 cut(s)	1599, 1634, 2239, 2578, 3507, 3526
TseFI	GTSAC	5 cut(s)	321, 2137, 2277, 3190, 3532
Tsp45I	GTSAC	5 cut(s)	321, 2137, 2277, 3190, 3532
TspGWI	ACGGA	1 cut(s)	3362
TspRI	CASTG	6 cut(s)	1599, 1634, 2239, 2578, 3507, 3526
Van91I	CCANNNNNTGG	2 cut(s)	2323, 2678
VpaK11BI	GGWCC	1 cut(s)	792
XapI	RAATTY	7 cut(s)	879, 898, 1577, 2030, 2368, 2639, 2882
XbaI	TCTAGA	1 cut(s)	221
XceI	RCATGY	3 cut(s)	495, 1876, 3282
XcmI	CCANNNNNNNNNTGG	2 cut(s)	538, 1925
XmiI	GTMKAC	1 cut(s)	3454
XmnI	GAANNNNTTC	2 cut(s)	708, 879
XspI	CTAG	8 cut(s)	63, 222, 1740, 1775, 1889, 2135, 2219, 2993

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.