Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000004

Orthogroup ID

OG0007831

Physical Location & Seq

Genomic Coordinates Forward (+)

22042540 .. 22053733

Gene Structure 11194 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_4G00301700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3549 bp

ATGGATCTTGCGTATGGAGGGTGTAGCTTTTGGGGTAATTCGAGAGTTGTTGTGAAAGCGTGTTTGGGGAAGAAGGTGAAGAGGAGTGTGTGTTTTAATGGTTGTAGGGTTTCGCGTTTGGGCTCTAGAGAAAATGCTGATGATCGTTGCTGGAGTTTGAATCTGAAAACGCCTTTGTTTCGTAGCTCTGGTAATGTTCTTAAAGGGTCAAGAGTGGTTTGGTGGTCACGGTGTCAGAGTAACGACTCATTAGCGTATGTCAATGGGAATGGTCGGAATGTAGAGTTTGTGGAAGGTCATGATGAGAGCTCAGGAGTTGCGCCCATCCATGATGATGAATTGAGCAGTTCCACAAAAGAGGAGGGTGATAAAGACAAAATAGATGAATCAGAGGCATGTACTGTGGATGAATTGAGGGAGTTGCTGCAGAATGCCATGAAAGAATTGGAAGTTGCACGTTGTAATAGTGCCATATTTGAAGAAAAGGCTCAGAAAATATCAGAAGCTGCGATTTCCCTGCAGGATGAAGCAGCAACTGCTTGGAATGATGTTAATTCAGCCCTTGACACTATTCAAGAGATTGTGAATGAAGAGGGGATTGCAAAAGAAGCTGTTCAGAAAGCAACAATGACTCTTTCATTAGCAGAGGCAAGGCTTCAGGTGGGAGCAGAATCTTTGGAGGTTGCAAAAAGGGGACCGGTTCGCTGGATGCTTCACGAGAGAGTGATGGGGAACATGATTCTGAAGACGATGAGAAAGCATTTTTGGTTGTGCAAGAAGAAATTCGGGAATGCCAGGCGAATTTGGCCAGCTCTGAATGCTTTGAAAGCAGAGGAGGATGTAACAAATATAATGCTATTAGCAGAGCAAGCTGTTGCTTTTGAACTTGAGGCAGCACAACATGTGAATGATGCAGAGATTGCATTACAAAGAGCAGAGAAATCTCTCTCCAATTCAACTCTTGATACCATAGAAAACAACCAGGGACAGATGTTGAATGATGATGCGGCTGTCGAGGAGGAGGAGAAGGTAGTTCAAGGAAGTTCTGCTAATATCATTATTGAAAAGGATAAAGATCTGTTAATTGATGGTGATTCGTCTGCTGTCAAGCCCTTACCAGATAGCCCTTCAGACAGAATCACTCAGAGTGTTGAAGAAACAACCCAAACTGCTGATCTAAGTGATCATGAGAAACAAAAGATAGGTGTAGATTCTTTTAAAGAAGCTGAAGTAGAGACTGAAAAGTCAAAGAATGTGGTTCAAACTAAAAAGCAGGAAACTCAGAAGGAATTGAGTAGGGAGAGTTCAACCTCAAATGCACCCAAGACAATAGTGAAGAAATCTTCTCGTTTCATTCCTGCATCTTTCTTTTCTTCTGAAGATGGGACTGAATTCACACCATCATCAGTGTTCCAGGGTCTGTTGGAGTATGCAAGGAAGCAGTGGCCCAAGTTGGTTGTTGGGATATTCCTATGTGGCATAGGGCTCACCTTTTACACTAATCGGGCAGAAAGAGCCACTCAACTGATACAACAGCCGGATGTAATTACCACTAGTTTTGAAGAAGTTTCCTCAACTGCGAGGCCTCTAGTTCAACAATTACGTAAACTTCCTAAAAGAATTAAAAGCCTAATTGATATGTTGCCTCATCAAGAGGTGAATGAGGAGGAAGCTTCCCTCTTTGACATGTTATGGTTATTGCTAGCAAGTGTGATATTTGTGCCTGTATTCCAGAAGATTCCTGGAGGTAGTCCTGTTCTTGGGTACTTGGCAGCAGGTATCTTAATTGGGCCTTATGGCCTCTCGATTATTCGTTATGTACATGGAACAAAGGCAATTGCCGAATTTGGTGTTGTTTTCTTACTGTTCAACATTGGCCTTGAGCTCTCTGTTGAAAGGTTGAGTTCCATGAAGAAATATGTATTTGGATTAGGCTCTGCTCAGGTTCTAGTCACAGCTGTTGTAGTTGGCTTGGTTGCTCATTTTGCTTGTGGGCTGCCTGGCCCTGCTGCAATTGTAATTGGCAATGGTCTAGCTTTATCATCCACTGCAGTTGTGCTGCAGGTACAAGATGGTATGGTTTTGCAATGCTGGTCTGGCAATTTTGGGGTGGAAGAGCTCCCTTTAAGGATACTTTCTCAGGATGCTGAGCAACTGCAAGAGGTCTTGCAAGAGCGGGGTGAGAGCACGTCACGCCATGGTCGTGCAACCTTTTCTGTTTTACTGTTCCAGGATTTGGCTGTTGTGGTTTTGCTAATACTTATACCTCTCATTTCACCAAATTCATCCAAAGGAGGGATTGGTTTCCAAGCTATTGCTGAAGCTCTTGGACTTGCTGCTGTAAAGGCAGCAGTTGCCATCACAGCCATTATTGCTGGTGGACGCTTGTTGCTTCGACCAATTTATAGGCAAATTGCAGAAAATCAAAACGCAGAAATATTTTCTGCCAATACATTGCTTGTTATTCTGGGAACAAGTCTTCTCACTGCCAGGGCTGGACTATCCATGGCATTGGGAGCATTTTTGGCTGGTTTGCTTCTTGCAGAAACTGAATTTTCCTTACAGGTTGAGTCGGATATTGCTCCATATCGTGGCCTTCTATTGGGTCTCTTTTTCATGACGGTTGGAATGTCTATTGATCCAAAACTTCTTGTTTCGAACTTCCCCATTATAATTGGATCATTAGGACTTCTACTTGTTGGCAAATGCTTATTGGTTGCTTTAATAGGCAAACTATCTGGCATTTCAATAATATCTGCAATAAGAGTTGGTCTTCTTCTTGCCCCTGGTGGAGAATTTGCATTTGTTGCTTTTGGTGAAGCTGTTAATCAGGGAATAATGTCTCCTCAACTATCTTCTTTGCTCTTTCTTGTCGTTGGAGTTTCAATGGCCCTCACACCATGGCTAGCTGCTGGAGGACAGTTAATTGCATCTCATTTTGAGCTGCATGATGTTCGAAGTTTACTACCCGATGAGAGTGAGATAATTGCACAGCTTCTTTCAGAGCGCCTAATTCCATTTGTAGCTCTTGATGTGAGGAGGTTTGTCTGTGATAGAGTGACAGTTGGACGTTCCCTGGACATTCCGGTCTATTTTGGAGATGCCGGTAGTCGAGAGGTGCTCCACAAAGTTGGTGCTCACAGAGCATGTGCTGCAGCAATAACGTTAGATTCCCCTGGTGCAAACTATAGAACTGTTTGGGCTCTGAGCAAGTATTTCCCCAACGTGAAAACTTTTGTCCGTGCTCATGATGTTGACCACGGTCTTAATTTGGAGAAGGCTGGGGCCACAGCGGTTGTCCCAGAGACCTTGGAACCGAGTCTACAGTTGGCAGCTGCTGTTCTTGCTCAGGCTAAACTTCCCACGTCAGAGATTGCAGCAGCCATCAATGAGTATAGATCCCGGCATCTTGCTGAGCTAACTGAGTTATGTGAAACCAGTGGAAGCTCTCTTGGCTATGGATTTTCTCGAATGATGAGCAAACCCAAACTTCCGCCTTTGGATCCCACAGACGATAACCAGTTCACTGAAGGAACACTGGCAATATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005451 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006810 GO:0006811 GO:0006812 GO:0006813 GO:0006996 GO:0008150 GO:0008324 GO:0009507 GO:0009526 GO:0009536 GO:0009657 GO:0009658 GO:0009941 GO:0009987 GO:0010109 GO:0015075 GO:0015077 GO:0015078 GO:0015079 GO:0015291 GO:0015297 GO:0015298 GO:0015299 GO:0015318 GO:0015386 GO:0015491 GO:0015672 GO:0016020 GO:0016043 GO:0019222 GO:0022804 GO:0022821 GO:0022857 GO:0022890 GO:0030001 GO:0031090 GO:0031323 GO:0031967 GO:0031969 GO:0031975 GO:0034220 GO:0042170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046873 GO:0050789 GO:0050794 GO:0051179 GO:0051234 GO:0055085 GO:0065007 GO:0071804 GO:0071805 GO:0071840 GO:0098655 GO:0098660 GO:0098662 GO:0099516 GO:1902600

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MutS_I MutS_II MutS_III MutS_V Na_H_Exchanger TrkA_N

Protein Analysis

1182

Amino Acids

128.08

Weight (kDa)

5.35

Isoelectric Point (pI)

40.05

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Na_H_Exchanger	PF00999	570 - 689	8.9e-17	Sodium/hydrogen exchanger, transmembrane
Na_H_Exchanger	PF00999	721 - 970	1.5e-34	Sodium/hydrogen exchanger, transmembrane
TrkA_N	PF02254	996 - 1100	1.7e-11	TrkA-N domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Orthologous Genes (Group: OG0007831)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G00630 AT4G00630
fragaria_vesca	FvH4_7g13660 FvH4_7g13660 FvH4_7g13660 FvH4_7g13660 FvH4_7g13660
malus_domestica	MD01G1053700.v1.1 MD07G1141400.v1.1
prunus_persica	Prupe.2G162700_v2.0.a1 Prupe.2G162700_v2.0.a1
pyrus_communis	pycom01g07930 pycom07g14030
rosa_chinensis	RchiOBHm_Chr1g0353741
rosa_laevigata	RLG00000028262
rosa_multiflora	Rmu_sc0005947.1_g000021
rosa_roxburghii	Rroxscaffold_4G00301700
rosa_rugosa	Rorug01G0237300 Rorug01G0237300
rosa_samantha	Rh1AG249500 Rh1BG219600 Rh1CG232200 Rh1DG246600
rosa_wichuraiana	Rw1G021770

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	2672
AasI	GACNNNNNNGTC	2 cut(s)	1243, 3086
Acc36I	ACCTGC	2 cut(s)	1766, 2053
AccB7I	CCANNNNNTGG	2 cut(s)	2236, 2591
AccBSI	CCGCTC	1 cut(s)	2176
AccI	GTMKAC	1 cut(s)	3322
AccII	CGCG	1 cut(s)	115
AciI	CCGC	4 cut(s)	1007, 2176, 3293, 3494
AclI	AACGTT	1 cut(s)	3164
AclWI	GGATC	6 cut(s)	12, 2633, 2686, 3393, 3497, 3510
AcoI	YGGCCR	1 cut(s)	806
AcsI	RAATTY	7 cut(s)	782, 801, 1391, 1844, 2281, 2552, 2795
AcuI	CTGAAG	7 cut(s)	641, 764, 1113, 1248, 1398, 2340, 3549
AfaI	GTAC	4 cut(s)	400, 1766, 1821, 2067
AfiI	CCNNNNNNNGG	5 cut(s)	1760, 2236, 2295, 2591, 2602
AflIII	ACRYGT	2 cut(s)	901, 1686
AgeI	ACCGGT	1 cut(s)	697
AhlI	ACTAGT	1 cut(s)	1553
AjiI	CACGTC	2 cut(s)	2190, 3366
AjuI	GAANNNNNNNTTGG	4 cut(s)	47, 79, 748, 780
Alw21I	GWGCWC	7 cut(s)	311, 1887, 2121, 2189, 3123, 3139, 3247
Alw26I	GTCTC	4 cut(s)	1229, 2612, 2847, 3299
AlwI	GGATC	6 cut(s)	12, 2633, 2686, 3393, 3497, 3510
AlwNI	CAGNNNCTG	5 cut(s)	506, 536, 1420, 2549, 3338
ApoI	RAATTY	7 cut(s)	782, 801, 1391, 1844, 2281, 2552, 2795
AsiGI	ACCGGT	1 cut(s)	697
Asp700I	GAANNNNTTC	2 cut(s)	612, 782
AspLEI	GCGC	2 cut(s)	322, 3009
AspS9I	GGNCC	6 cut(s)	695, 1446, 1790, 2003, 2890, 3285
AsuC2I	CCSGG	1 cut(s)	3403
AsuHPI	GGTGA	8 cut(s)	88, 377, 1103, 1480, 1669, 2192, 2268, 2828
AsuII	TTCGAA	2 cut(s)	2657, 2956
AsuNHI	GCTAGC	2 cut(s)	1702, 2905
AvaII	GGWCC	1 cut(s)	695
BalI	TGGCCA	1 cut(s)	808
BamHI	GGATCC	1 cut(s)	3502
BanII	GRGCYC	6 cut(s)	125, 311, 1488, 1887, 2121, 3205
BauI	CACGAG	1 cut(s)	716
BbsI	GAAGAC	3 cut(s)	752, 2471, 2765
Bbv12I	GWGCWC	7 cut(s)	311, 1887, 2121, 2189, 3123, 3139, 3247
BccI	CCATC	8 cut(s)	332, 721, 1082, 1376, 1408, 2066, 2366, 3392
BcgI	CGANNNNNNTGC	4 cut(s)	499, 533, 2936, 2970
BciVI	GTATCC	1 cut(s)	2124
BclI	TGATCA	1 cut(s)	1183
BcnI	CCSGG	1 cut(s)	3403
BcoDI	GTCTC	4 cut(s)	1229, 2612, 2847, 3299
BcuI	ACTAGT	1 cut(s)	1553
BfaI	CTAG	7 cut(s)	126, 1554, 1589, 1703, 1949, 2033, 2906
BfmI	CTRYAG	7 cut(s)	425, 518, 2049, 2060, 3153, 3187, 3323
BfoI	RGCGCY	1 cut(s)	3010
BfuAI	ACCTGC	2 cut(s)	1766, 2053
BfuI	GTATCC	1 cut(s)	2124
BglII	AGATCT	1 cut(s)	1075
BlpI	GCTNAGC	2 cut(s)	2148, 3414
Bme18I	GGWCC	1 cut(s)	695
BmgBI	CACGTC	2 cut(s)	2190, 3366
BmgT120I	GGNCC	6 cut(s)	695, 1446, 1790, 2003, 2890, 3285
BmiI	GGNNCC	4 cut(s)	696, 3286, 3315, 3504
BmsI	GCATC	8 cut(s)	699, 901, 994, 1370, 2134, 2939, 3091, 3415
BmtI	GCTAGC	2 cut(s)	1706, 2909
BoxI	GACNNNNGTC	1 cut(s)	3261
BpiI	GAAGAC	3 cut(s)	752, 2471, 2765
BplI	GAGNNNNNCTC	2 cut(s)	3105, 3137
BpmI	CTGGAG	3 cut(s)	172, 1764, 2934
Bpu10I	CCTNAGC	3 cut(s)	310, 1941, 3348
Bpu1102I	GCTNAGC	2 cut(s)	2148, 3414
Bpu14I	TTCGAA	2 cut(s)	2657, 2956
BpuEI	CTTGAG	2 cut(s)	908, 1901
BpuMI	CCSGG	1 cut(s)	3403
BsaAI	YACGTR	1 cut(s)	1604
BsaBI	GATNNNNATC	1 cut(s)	1074
BsaI	GGTCTC	2 cut(s)	2612, 3299
BsaWI	WCCGGW	2 cut(s)	697, 3085
BsaXI	ACNNNNNCTCC	2 cut(s)	76, 106
Bsc4I	CCNNNNNNNGG	5 cut(s)	1760, 2236, 2295, 2591, 2602
Bse118I	RCCGGY	2 cut(s)	697, 3104
Bse1I	ACTGG	3 cut(s)	3438, 3520, 3543
Bse3DI	GCAATG	3 cut(s)	2032, 2093, 2453
Bse8I	GATNNNNATC	1 cut(s)	1074
BseGI	GGATG	9 cut(s)	324, 412, 529, 714, 844, 1546, 2042, 2149, 2285
BseJI	GATNNNNATC	1 cut(s)	1074
BseLI	CCNNNNNNNGG	5 cut(s)	1760, 2236, 2295, 2591, 2602
BseMI	GCAATG	3 cut(s)	2032, 2093, 2453
BseNI	ACTGG	3 cut(s)	3438, 3520, 3543
BseRI	GAGGAG	9 cut(s)	97, 374, 848, 1031, 1034, 1037, 1679, 2835, 3052
BseYI	CCCAGC	1 cut(s)	3281
Bsh1236I	CGCG	1 cut(s)	115
BshTI	ACCGGT	1 cut(s)	697
BsiHKAI	GWGCWC	7 cut(s)	311, 1887, 2121, 2189, 3123, 3139, 3247
BsiSI	CCGG	5 cut(s)	698, 1538, 3086, 3105, 3403
BslFI	GGGAC	4 cut(s)	708, 999, 1399, 3284
BslI	CCNNNNNNNGG	5 cut(s)	1760, 2236, 2295, 2591, 2602
BsmAI	GTCTC	4 cut(s)	1229, 2612, 2847, 3299
BsmFI	GGGAC	4 cut(s)	708, 999, 1399, 3284
BsmI	GAATGC	3 cut(s)	436, 796, 823
Bso31I	GGTCTC	2 cut(s)	2612, 3299
Bsp119I	TTCGAA	2 cut(s)	2657, 2956
Bsp1407I	TGTACA	1 cut(s)	1819
Bsp143I	GATC	9 cut(s)	4, 142, 1075, 1174, 1183, 2638, 2678, 3398, 3502
Bsp1720I	GCTNAGC	2 cut(s)	2148, 3414
Bsp19I	CCATGG	3 cut(s)	2197, 2505, 2900
BspACI	CCGC	4 cut(s)	1007, 2176, 3293, 3494
BspFNI	CGCG	1 cut(s)	115
BspHI	TCATGA	4 cut(s)	298, 1186, 2616, 3247
BspLI	GGNNCC	4 cut(s)	696, 3286, 3315, 3504
BspMAI	CTGCAG	5 cut(s)	429, 522, 2053, 2064, 3157
BspMI	ACCTGC	2 cut(s)	1766, 2053
BspOI	GCTAGC	2 cut(s)	1706, 2909
BspPI	GGATC	6 cut(s)	12, 2633, 2686, 3393, 3497, 3510
BspQI	GCTCTTC	1 cut(s)	2109
BspT104I	TTCGAA	2 cut(s)	2657, 2956
BspTNI	GGTCTC	2 cut(s)	2612, 3299
BsrBI	CCGCTC	1 cut(s)	2176
BsrDI	GCAATG	3 cut(s)	2032, 2093, 2453
BsrFI	RCCGGY	2 cut(s)	697, 3104
BsrGI	TGTACA	1 cut(s)	1819
BsrI	ACTGG	3 cut(s)	3438, 3520, 3543
BssAI	RCCGGY	2 cut(s)	697, 3104
BssMI	GATC	9 cut(s)	4, 142, 1075, 1174, 1183, 2638, 2678, 3398, 3502
BssSI	CACGAG	1 cut(s)	716
BssT1I	CCWWGG	4 cut(s)	2197, 2505, 2900, 3309
Bst2BI	CACGAG	1 cut(s)	716
Bst6I	CTCTTC	3 cut(s)	74, 585, 2109
BstAPI	GCANNNNNTGC	5 cut(s)	536, 920, 2354, 2807, 3152
BstAUI	TGTACA	1 cut(s)	1819
BstBAI	YACGTR	1 cut(s)	1604
BstBI	TTCGAA	2 cut(s)	2657, 2956
BstC8I	GCNNGC	4 cut(s)	810, 870, 1704, 2907
BstDSI	CCRYGG	4 cut(s)	2197, 2505, 2900, 3259
BstF5I	GGATG	9 cut(s)	324, 412, 529, 714, 844, 1546, 2042, 2149, 2285
BstFNI	CGCG	1 cut(s)	115
BstH2I	RGCGCY	1 cut(s)	3010
BstHHI	GCGC	2 cut(s)	322, 3009
BstKTI	GATC	9 cut(s)	7, 145, 1078, 1177, 1186, 2641, 2681, 3401, 3505
BstMAI	GTCTC	4 cut(s)	1229, 2612, 2847, 3299
BstMBI	GATC	9 cut(s)	4, 142, 1075, 1174, 1183, 2638, 2678, 3398, 3502
BstNSI	RCATGY	4 cut(s)	399, 905, 1690, 3150
BstPAI	GACNNNNGTC	1 cut(s)	3261
BstSFI	CTRYAG	7 cut(s)	425, 518, 2049, 2060, 3153, 3187, 3323
BstSNI	TACGTA	1 cut(s)	1604
BstUI	CGCG	1 cut(s)	115
BstV2I	GAAGAC	3 cut(s)	752, 2471, 2765
BstX2I	RGATCY	4 cut(s)	4, 1075, 3398, 3502
BstXI	CCANNNNNNTGG	2 cut(s)	2512, 3131
BstYI	RGATCY	4 cut(s)	4, 1075, 3398, 3502
BsuI	GTATCC	1 cut(s)	2124
BtgI	CCRYGG	4 cut(s)	2197, 2505, 2900, 3259
BtrI	CACGTC	2 cut(s)	2190, 3366
BtsCI	GGATG	9 cut(s)	324, 412, 529, 714, 844, 1546, 2042, 2149, 2285
BtsI	GCAGTG	3 cut(s)	1448, 2046, 2484
BtsIMutI	CAGTG	7 cut(s)	1413, 1448, 2046, 2484, 3445, 3525, 3536
BveI	ACCTGC	2 cut(s)	1766, 2053
Cac8I	GCNNGC	4 cut(s)	810, 870, 1704, 2907
CaiI	CAGNNNCTG	5 cut(s)	506, 536, 1420, 2549, 3338
CciI	TCATGA	4 cut(s)	298, 1186, 2616, 3247
CfoI	GCGC	2 cut(s)	322, 3009
Cfr10I	RCCGGY	2 cut(s)	697, 3104
Cfr13I	GGNCC	6 cut(s)	695, 1446, 1790, 2003, 2890, 3285
CseI	GACGC	1 cut(s)	2391
Csp6I	GTAC	4 cut(s)	399, 1765, 1820, 2066
CspAI	ACCGGT	1 cut(s)	697
CspCI	CAANNNNNGTGG	8 cut(s)	1236, 1271, 1540, 1575, 2035, 2070, 3277, 3312
CviQI	GTAC	4 cut(s)	399, 1765, 1820, 2066
DpnI	GATC	9 cut(s)	6, 144, 1077, 1176, 1185, 2640, 2680, 3400, 3504
DpnII	GATC	9 cut(s)	4, 142, 1075, 1174, 1183, 2638, 2678, 3398, 3502
DraI	TTTAAA	1 cut(s)	1219
DrdI	GACNNNNNNGTC	2 cut(s)	1243, 3086
DseDI	GACNNNNNNGTC	2 cut(s)	1243, 3086
EaeI	YGGCCR	1 cut(s)	806
Eam1104I	CTCTTC	3 cut(s)	74, 585, 2109
EarI	CTCTTC	3 cut(s)	74, 585, 2109
EciI	GGCGGA	1 cut(s)	3483
Ecl136II	GAGCTC	3 cut(s)	309, 1885, 2119
Eco105I	TACGTA	1 cut(s)	1604
Eco130I	CCWWGG	4 cut(s)	2197, 2505, 2900, 3309
Eco147I	AGGCCT	1 cut(s)	1585
Eco24I	GRGCYC	6 cut(s)	125, 311, 1488, 1887, 2121, 3205
Eco31I	GGTCTC	2 cut(s)	2612, 3299
Eco47I	GGWCC	1 cut(s)	695
Eco53kI	GAGCTC	3 cut(s)	309, 1885, 2119
Eco57I	CTGAAG	7 cut(s)	641, 764, 1113, 1248, 1398, 2340, 3549
EcoICRI	GAGCTC	3 cut(s)	309, 1885, 2119
EcoRI	GAATTC	1 cut(s)	1391
EcoT14I	CCWWGG	4 cut(s)	2197, 2505, 2900, 3309
EcoT38I	GRGCYC	6 cut(s)	125, 311, 1488, 1887, 2121, 3205
ErhI	CCWWGG	4 cut(s)	2197, 2505, 2900, 3309
FaqI	GGGAC	4 cut(s)	708, 999, 1399, 3284
FauI	CCCGC	1 cut(s)	2169
FbaI	TGATCA	1 cut(s)	1183
FblI	GTMKAC	1 cut(s)	3322
FokI	GGATG	9 cut(s)	311, 419, 536, 721, 851, 1553, 2029, 2156, 2272
FriOI	GRGCYC	6 cut(s)	125, 311, 1488, 1887, 2121, 3205
FspBI	CTAG	7 cut(s)	126, 1554, 1589, 1703, 1949, 2033, 2906
GlaI	GCGC	2 cut(s)	321, 3008
GsaI	CCCAGC	1 cut(s)	3285
GsuI	CTGGAG	3 cut(s)	172, 1764, 2934
HaeII	RGCGCY	1 cut(s)	3010
HapII	CCGG	5 cut(s)	698, 1538, 3086, 3105, 3403
HgaI	GACGC	1 cut(s)	2391
HhaI	GCGC	2 cut(s)	322, 3009
Hin6I	GCGC	2 cut(s)	320, 3007
HinP1I	GCGC	2 cut(s)	320, 3007
HincII	GTYRAC	1 cut(s)	3256
HindII	GTYRAC	1 cut(s)	3256
HindIII	AAGCTT	1 cut(s)	1671
HpaII	CCGG	5 cut(s)	698, 1538, 3086, 3105, 3403
HphI	GGTGA	8 cut(s)	88, 377, 1103, 1480, 1669, 2192, 2268, 2828
Hpy166II	GTNNAC	6 cut(s)	1607, 2381, 2963, 3256, 3323, 3525
Hpy8I	GTNNAC	6 cut(s)	1607, 2381, 2963, 3256, 3323, 3525
HpyAV	CCTTC	8 cut(s)	67, 287, 1021, 1137, 1279, 2606, 3271, 3524
HpyCH4IV	ACGT	7 cut(s)	457, 1603, 2189, 3070, 3164, 3225, 3365
HpySE526I	ACGT	7 cut(s)	457, 1603, 2189, 3070, 3164, 3225, 3365
HspAI	GCGC	2 cut(s)	320, 3007
Ksp22I	TGATCA	1 cut(s)	1183
Kzo9I	GATC	9 cut(s)	4, 142, 1075, 1174, 1183, 2638, 2678, 3398, 3502
LguI	GCTCTTC	1 cut(s)	2109
LmnI	GCTCC	5 cut(s)	665, 2124, 2516, 2587, 3126
LweI	GCATC	8 cut(s)	699, 901, 994, 1370, 2134, 2939, 3091, 3415
MaeI	CTAG	7 cut(s)	126, 1554, 1589, 1703, 1949, 2033, 2906
MaeII	ACGT	7 cut(s)	457, 1603, 2189, 3070, 3164, 3225, 3365
MaeIII	GTNAC	6 cut(s)	225, 239, 841, 1951, 2190, 3058
MalI	GATC	9 cut(s)	6, 144, 1077, 1176, 1185, 2640, 2680, 3400, 3504
MbiI	CCGCTC	1 cut(s)	2176
MboI	GATC	9 cut(s)	4, 142, 1075, 1174, 1183, 2638, 2678, 3398, 3502
MfeI	CAATTG	2 cut(s)	1836, 2013
MflI	RGATCY	4 cut(s)	4, 1075, 3398, 3502
MlsI	TGGCCA	1 cut(s)	808
MluNI	TGGCCA	1 cut(s)	808
MlyI	GAGTC	4 cut(s)	239, 625, 2579, 3328
MmeI	TCCRAC	6 cut(s)	254, 1404, 2553, 2605, 2857, 3046
Mox20I	TGGCCA	1 cut(s)	808
MroXI	GAANNNNTTC	2 cut(s)	612, 782
MscI	TGGCCA	1 cut(s)	808
MslI	CAYNNNNRTG	3 cut(s)	333, 906, 2202
Msp20I	TGGCCA	1 cut(s)	808
MspA1I	CMGCKG	3 cut(s)	1958, 3293, 3335
MspI	CCGG	5 cut(s)	698, 1538, 3086, 3105, 3403
MunI	CAATTG	2 cut(s)	1836, 2013
Mva1269I	GAATGC	3 cut(s)	436, 796, 823
MvnI	CGCG	1 cut(s)	115
NciI	CCSGG	1 cut(s)	3403
NcoI	CCATGG	3 cut(s)	2197, 2505, 2900
NdeII	GATC	9 cut(s)	4, 142, 1075, 1174, 1183, 2638, 2678, 3398, 3502
NheI	GCTAGC	2 cut(s)	1702, 2905
NlaIV	GGNNCC	4 cut(s)	696, 3286, 3315, 3504
NmuCI	GTSAC	4 cut(s)	225, 1951, 2190, 3058
NspI	RCATGY	4 cut(s)	399, 905, 1690, 3150
NspV	TTCGAA	2 cut(s)	2657, 2956
PagI	TCATGA	4 cut(s)	298, 1186, 2616, 3247
PceI	AGGCCT	1 cut(s)	1585
PciI	ACATGT	2 cut(s)	901, 1686
PciSI	GCTCTTC	1 cut(s)	2109
PcsI	WCGNNNNNNNCGW	1 cut(s)	2200
PctI	GAATGC	3 cut(s)	436, 796, 823
PdmI	GAANNNNTTC	2 cut(s)	612, 782
PfeI	GAWTC	9 cut(s)	160, 386, 671, 739, 1094, 1137, 1211, 1738, 3170
PflMI	CCANNNNNTGG	2 cut(s)	2236, 2591
PfoI	TCCNGGA	2 cut(s)	1741, 2229
PinAI	ACCGGT	1 cut(s)	697
PleI	GAGTC	4 cut(s)	239, 625, 2578, 3327
PpsI	GAGTC	4 cut(s)	239, 625, 2578, 3327
Ppu21I	YACGTR	1 cut(s)	1604
PscI	ACATGT	2 cut(s)	901, 1686
PshAI	GACNNNNGTC	1 cut(s)	3261
PsiI	TTATAA	1 cut(s)	2672
Psp124BI	GAGCTC	3 cut(s)	311, 1887, 2121
Psp1406I	AACGTT	1 cut(s)	3164
PspFI	CCCAGC	1 cut(s)	3281
PspN4I	GGNNCC	4 cut(s)	696, 3286, 3315, 3504
PspPI	GGNCC	6 cut(s)	695, 1446, 1790, 2003, 2890, 3285
PsrI	GAACNNNNNNTAC	4 cut(s)	1288, 1320, 3306, 3338
PstI	CTGCAG	5 cut(s)	429, 522, 2053, 2064, 3157
PstNI	CAGNNNCTG	5 cut(s)	506, 536, 1420, 2549, 3338
PsuI	RGATCY	4 cut(s)	4, 1075, 3398, 3502
PvuII	CAGCTG	2 cut(s)	1958, 3335
RsaI	GTAC	4 cut(s)	400, 1766, 1821, 2067
RsaNI	GTAC	4 cut(s)	399, 1765, 1820, 2066
RseI	CAYNNNNRTG	3 cut(s)	333, 906, 2202
SacI	GAGCTC	3 cut(s)	311, 1887, 2121
SapI	GCTCTTC	1 cut(s)	2109
Sau3AI	GATC	9 cut(s)	4, 142, 1075, 1174, 1183, 2638, 2678, 3398, 3502
Sau96I	GGNCC	6 cut(s)	695, 1446, 1790, 2003, 2890, 3285
SbfI	CCTGCAGG	1 cut(s)	522
SchI	GAGTC	4 cut(s)	239, 625, 2579, 3328
SdaI	CCTGCAGG	1 cut(s)	522
SfaNI	GCATC	8 cut(s)	699, 901, 994, 1370, 2134, 2939, 3091, 3415
SfcI	CTRYAG	7 cut(s)	425, 518, 2049, 2060, 3153, 3187, 3323
SfuI	TTCGAA	2 cut(s)	2657, 2956
SinI	GGWCC	1 cut(s)	695
SmiMI	CAYNNNNRTG	3 cut(s)	333, 906, 2202
SmlI	CTYRAG	2 cut(s)	887, 1880
SmoI	CTYRAG	2 cut(s)	887, 1880
SnaBI	TACGTA	1 cut(s)	1604
SpeI	ACTAGT	1 cut(s)	1553
Sse8387I	CCTGCAGG	1 cut(s)	522
SseBI	AGGCCT	1 cut(s)	1585
SsiI	CCGC	4 cut(s)	1007, 2176, 3293, 3494
SspI	AATATT	1 cut(s)	2439
SspMI	CTAG	7 cut(s)	126, 1554, 1589, 1703, 1949, 2033, 2906
SstI	GAGCTC	3 cut(s)	311, 1887, 2121
StuI	AGGCCT	1 cut(s)	1585
StyI	CCWWGG	4 cut(s)	2197, 2505, 2900, 3309
TaiI	ACGT	7 cut(s)	460, 1606, 2192, 3073, 3167, 3228, 3368
TaqI	TCGA	8 cut(s)	41, 1014, 1805, 2395, 2657, 2956, 3112, 3469
TatI	WGTACW	2 cut(s)	398, 1819
TauI	GCSGC	1 cut(s)	1010
TfiI	GAWTC	9 cut(s)	160, 386, 671, 739, 1094, 1137, 1211, 1738, 3170
TscAI	CASTG	7 cut(s)	1413, 1448, 2053, 2491, 3445, 3532, 3543
TseFI	GTSAC	4 cut(s)	225, 1951, 2190, 3058
Tsp45I	GTSAC	4 cut(s)	225, 1951, 2190, 3058
TspGWI	ACGGA	1 cut(s)	3230
TspRI	CASTG	7 cut(s)	1413, 1448, 2053, 2491, 3445, 3532, 3543
Van91I	CCANNNNNTGG	2 cut(s)	2236, 2591
VpaK11BI	GGWCC	1 cut(s)	695
XapI	RAATTY	7 cut(s)	782, 801, 1391, 1844, 2281, 2552, 2795
XbaI	TCTAGA	1 cut(s)	125
XceI	RCATGY	4 cut(s)	399, 905, 1690, 3150
XcmI	CCANNNNNNNNNTGG	2 cut(s)	442, 1739
XmiI	GTMKAC	1 cut(s)	3322
XmnI	GAANNNNTTC	2 cut(s)	612, 782
XspI	CTAG	7 cut(s)	126, 1554, 1589, 1703, 1949, 2033, 2906

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.