ATPase family associated with various cellular activities (AAA)
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT3G10420 AT3G10420 |
| fragaria_vesca | FvH4_7g18530 FvH4_7g18530 FvH4_7g18530 |
| malus_domestica | MD01G1101700.v1.1 MD07G1168300.v1.1 |
| prunus_persica | Prupe.2G206900_v2.0.a1 |
| pyrus_communis | pycom01g12830 pycom07g16270 |
| rosa_chinensis | RchiOBHm_Chr1g0362311 |
| rosa_laevigata | RLG00000027652 |
| rosa_multiflora | Rmu_sc0013178.1_g000001 Rmu_sc0037182.1_g000001 |
| rosa_roxburghii | Rroxscaffold_4G00294260 |
| rosa_rugosa | Rorug01G0297300.1 Rorug01G0297400 Rorug01G0297500 |
| rosa_samantha | Rh1AG306200 Rh1BG269700 Rh1CG287200 Rh1DG299900 |
| rosa_wichuraiana | Rw1G027180 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc16I | TGCGCA | 1 cut(s) | 150 |
| Acc36I | ACCTGC | 1 cut(s) | 1500 |
| Acc65I | GGTACC | 1 cut(s) | 2084 |
| AccB1I | GGYRCC | 1 cut(s) | 2084 |
| AccII | CGCG | 1 cut(s) | 639 |
| AciI | CCGC | 5 cut(s) | 290, 637, 654, 1253, 2073 |
| AclWI | GGATC | 5 cut(s) | 42, 228, 1471, 1600, 1613 |
| AcsI | RAATTY | 6 cut(s) | 204, 253, 262, 268, 1622, 1942 |
| AcuI | CTGAAG | 3 cut(s) | 23, 77, 2063 |
| AfaI | GTAC | 4 cut(s) | 356, 949, 1951, 2086 |
| AfiI | CCNNNNNNNGG | 4 cut(s) | 240, 643, 689, 806 |
| AflIII | ACRYGT | 1 cut(s) | 1136 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 1357 |
| AhlI | ACTAGT | 1 cut(s) | 973 |
| AjiI | CACGTC | 1 cut(s) | 282 |
| AjnI | CCWGG | 3 cut(s) | 682, 1849, 1964 |
| Alw21I | GWGCWC | 3 cut(s) | 17, 381, 559 |
| Alw26I | GTCTC | 2 cut(s) | 124, 780 |
| AlwI | GGATC | 5 cut(s) | 42, 228, 1471, 1600, 1613 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 1952 |
| AoxI | GGCC | 4 cut(s) | 212, 586, 1121, 1485 |
| ApoI | RAATTY | 6 cut(s) | 204, 253, 262, 268, 1622, 1942 |
| AseI | ATTAAT | 1 cut(s) | 531 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 1745 |
| Asp718I | GGTACC | 1 cut(s) | 2084 |
| AspLEI | GCGC | 1 cut(s) | 151 |
| AspS9I | GGNCC | 3 cut(s) | 677, 1121, 1395 |
| AsuC2I | CCSGG | 3 cut(s) | 235, 1419, 1900 |
| AsuHPI | GGTGA | 5 cut(s) | 446, 682, 1079, 1522, 2059 |
| AsuII | TTCGAA | 2 cut(s) | 266, 562 |
| AvaII | GGWCC | 2 cut(s) | 677, 1395 |
| BaeGI | GKGCMC | 1 cut(s) | 363 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 2076, 2109 |
| BamHI | GGATCC | 1 cut(s) | 1605 |
| BanI | GGYRCC | 1 cut(s) | 2084 |
| BanII | GRGCYC | 3 cut(s) | 17, 381, 413 |
| BauI | CACGAG | 1 cut(s) | 362 |
| BbsI | GAAGAC | 2 cut(s) | 1106, 1338 |
| Bbv12I | GWGCWC | 3 cut(s) | 17, 381, 559 |
| BbvCI | CCTCAGC | 1 cut(s) | 627 |
| BccI | CCATC | 6 cut(s) | 193, 223, 388, 1358, 1507, 1795 |
| BceAI | ACGGC | 2 cut(s) | 494, 582 |
| BciT130I | CCWGG | 3 cut(s) | 684, 1851, 1966 |
| BciVI | GTATCC | 1 cut(s) | 757 |
| BclI | TGATCA | 2 cut(s) | 705, 736 |
| BcnI | CCSGG | 3 cut(s) | 235, 1419, 1900 |
| BcoDI | GTCTC | 2 cut(s) | 124, 780 |
| BcuI | ACTAGT | 1 cut(s) | 973 |
| BfaI | CTAG | 5 cut(s) | 720, 974, 1376, 1907, 1913 |
| BfuAI | ACCTGC | 1 cut(s) | 1500 |
| BfuI | GTATCC | 1 cut(s) | 757 |
| BglII | AGATCT | 2 cut(s) | 472, 1372 |
| BmcAI | AGTACT | 1 cut(s) | 949 |
| Bme1390I | CCNGG | 6 cut(s) | 235, 684, 1419, 1851, 1900, 1966 |
| Bme18I | GGWCC | 2 cut(s) | 677, 1395 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 1357 |
| BmgBI | CACGTC | 1 cut(s) | 282 |
| BmgT120I | GGNCC | 3 cut(s) | 677, 1121, 1395 |
| BmiI | GGNNCC | 4 cut(s) | 410, 1122, 1607, 2086 |
| BmrFI | CCNGG | 6 cut(s) | 235, 684, 1419, 1851, 1900, 1966 |
| BpiI | GAAGAC | 2 cut(s) | 1106, 1338 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 1045, 1077 |
| BpmI | CTGGAG | 2 cut(s) | 705, 1832 |
| Bpu10I | CCTNAGC | 1 cut(s) | 627 |
| Bpu14I | TTCGAA | 2 cut(s) | 266, 562 |
| BpuEI | CTTGAG | 1 cut(s) | 1502 |
| BpuMI | CCSGG | 3 cut(s) | 235, 1419, 1900 |
| Bsa29I | ATCGAT | 1 cut(s) | 188 |
| BsaBI | GATNNNNATC | 1 cut(s) | 1377 |
| BsaJI | CCNNGG | 4 cut(s) | 1601, 1609, 1662, 1964 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 95, 125, 1848, 1878 |
| Bsc4I | CCNNNNNNNGG | 4 cut(s) | 240, 643, 689, 806 |
| Bse118I | RCCGGY | 1 cut(s) | 1861 |
| Bse1I | ACTGG | 8 cut(s) | 945, 1215, 1454, 1578, 1630, 1815, 2028, 2074 |
| Bse8I | GATNNNNATC | 1 cut(s) | 1377 |
| BseBI | CCWGG | 3 cut(s) | 684, 1851, 1966 |
| BseCI | ATCGAT | 1 cut(s) | 188 |
| BseDI | CCNNGG | 4 cut(s) | 1601, 1609, 1662, 1964 |
| BseGI | GGATG | 4 cut(s) | 633, 834, 1207, 1574 |
| BseJI | GATNNNNATC | 1 cut(s) | 1377 |
| BseLI | CCNNNNNNNGG | 4 cut(s) | 240, 643, 689, 806 |
| BseMII | CTCAG | 5 cut(s) | 69, 462, 618, 971, 1944 |
| BseNI | ACTGG | 8 cut(s) | 945, 1215, 1454, 1578, 1630, 1815, 2028, 2074 |
| BseRI | GAGGAG | 5 cut(s) | 169, 380, 978, 1829, 2094 |
| BseSI | GKGCMC | 1 cut(s) | 363 |
| Bsh1236I | CGCG | 1 cut(s) | 639 |
| BshFI | GGCC | 4 cut(s) | 214, 588, 1123, 1487 |
| BshNI | GGYRCC | 1 cut(s) | 2084 |
| BshVI | ATCGAT | 1 cut(s) | 188 |
| BsiHKAI | GWGCWC | 3 cut(s) | 17, 381, 559 |
| BsiSI | CCGG | 5 cut(s) | 200, 234, 1419, 1862, 1900 |
| BslFI | GGGAC | 1 cut(s) | 618 |
| BslI | CCNNNNNNNGG | 4 cut(s) | 240, 643, 689, 806 |
| BsmAI | GTCTC | 2 cut(s) | 124, 780 |
| BsmBI | CGTCTC | 1 cut(s) | 780 |
| BsmFI | GGGAC | 1 cut(s) | 618 |
| BsnI | GGCC | 4 cut(s) | 214, 588, 1123, 1487 |
| Bsp119I | TTCGAA | 2 cut(s) | 266, 562 |
| Bsp1286I | GDGCHC | 5 cut(s) | 17, 363, 381, 413, 559 |
| Bsp143I | GATC | 9 cut(s) | 34, 220, 472, 705, 736, 1372, 1378, 1476, 1605 |
| Bsp19I | CCATGG | 2 cut(s) | 1601, 1662 |
| BspACI | CCGC | 5 cut(s) | 290, 637, 654, 1253, 2073 |
| BspANI | GGCC | 4 cut(s) | 214, 588, 1123, 1487 |
| BspCNI | CTCAG | 5 cut(s) | 68, 461, 619, 970, 1945 |
| BspDI | ATCGAT | 1 cut(s) | 188 |
| BspFNI | CGCG | 1 cut(s) | 639 |
| BspHI | TCATGA | 1 cut(s) | 1647 |
| BspLI | GGNNCC | 4 cut(s) | 410, 1122, 1607, 2086 |
| BspMI | ACCTGC | 1 cut(s) | 1500 |
| BspPI | GGATC | 5 cut(s) | 42, 228, 1471, 1600, 1613 |
| BspQI | GCTCTTC | 1 cut(s) | 564 |
| BspT104I | TTCGAA | 2 cut(s) | 266, 562 |
| BspT107I | GGYRCC | 1 cut(s) | 2084 |
| BsrFI | RCCGGY | 1 cut(s) | 1861 |
| BsrI | ACTGG | 8 cut(s) | 945, 1215, 1454, 1578, 1630, 1815, 2028, 2074 |
| BssAI | RCCGGY | 1 cut(s) | 1861 |
| BssECI | CCNNGG | 4 cut(s) | 1601, 1609, 1662, 1964 |
| BssMI | GATC | 9 cut(s) | 34, 220, 472, 705, 736, 1372, 1378, 1476, 1605 |
| BssSI | CACGAG | 1 cut(s) | 362 |
| BssT1I | CCWWGG | 2 cut(s) | 1601, 1662 |
| Bst2BI | CACGAG | 1 cut(s) | 362 |
| Bst2UI | CCWGG | 3 cut(s) | 684, 1851, 1966 |
| Bst4CI | ACNGT | 6 cut(s) | 118, 521, 569, 1198, 1301, 1324 |
| Bst6I | CTCTTC | 4 cut(s) | 127, 338, 564, 1791 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 941 |
| BstBI | TTCGAA | 2 cut(s) | 266, 562 |
| BstC8I | GCNNGC | 3 cut(s) | 294, 377, 483 |
| BstDEI | CTNAG | 5 cut(s) | 55, 448, 627, 957, 1953 |
| BstDSI | CCRYGG | 2 cut(s) | 1601, 1662 |
| BstEII | GGTNACC | 1 cut(s) | 1449 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 804 |
| BstF5I | GGATG | 4 cut(s) | 633, 834, 1207, 1574 |
| BstFNI | CGCG | 1 cut(s) | 639 |
| BstHHI | GCGC | 1 cut(s) | 151 |
| BstKTI | GATC | 9 cut(s) | 37, 223, 475, 708, 739, 1375, 1381, 1479, 1608 |
| BstMAI | GTCTC | 2 cut(s) | 124, 780 |
| BstMBI | GATC | 9 cut(s) | 34, 220, 472, 705, 736, 1372, 1378, 1476, 1605 |
| BstMWI | GCNNNNNNNGC | 8 cut(s) | 358, 594, 941, 1211, 1571, 1729, 1867, 1909 |
| BstNI | CCWGG | 3 cut(s) | 684, 1851, 1966 |
| BstNSI | RCATGY | 1 cut(s) | 1140 |
| BstPI | GGTNACC | 1 cut(s) | 1449 |
| BstSCI | CCNGG | 6 cut(s) | 233, 682, 1417, 1849, 1898, 1964 |
| BstSLI | GKGCMC | 1 cut(s) | 363 |
| BstUI | CGCG | 1 cut(s) | 639 |
| BstV2I | GAAGAC | 2 cut(s) | 1106, 1338 |
| BstX2I | RGATCY | 5 cut(s) | 34, 472, 1372, 1476, 1605 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 977 |
| BstYI | RGATCY | 5 cut(s) | 34, 472, 1372, 1476, 1605 |
| Bsu15I | ATCGAT | 1 cut(s) | 188 |
| BsuI | GTATCC | 1 cut(s) | 757 |
| BsuRI | GGCC | 4 cut(s) | 214, 588, 1123, 1487 |
| BsuTUI | ATCGAT | 1 cut(s) | 188 |
| BtgI | CCRYGG | 2 cut(s) | 1601, 1662 |
| BtrI | CACGTC | 1 cut(s) | 282 |
| BtsCI | GGATG | 4 cut(s) | 633, 834, 1207, 1574 |
| BtsI | GCAGTG | 1 cut(s) | 882 |
| BtsIMutI | CAGTG | 3 cut(s) | 882, 1461, 1808 |
| BveI | ACCTGC | 1 cut(s) | 1500 |
| Cac8I | GCNNGC | 3 cut(s) | 294, 377, 483 |
| CaiI | CAGNNNCTG | 1 cut(s) | 1952 |
| CciI | TCATGA | 1 cut(s) | 1647 |
| CfoI | GCGC | 1 cut(s) | 151 |
| Cfr10I | RCCGGY | 1 cut(s) | 1861 |
| Cfr13I | GGNCC | 3 cut(s) | 677, 1121, 1395 |
| ClaI | ATCGAT | 1 cut(s) | 188 |
| CseI | GACGC | 1 cut(s) | 1890 |
| Csp6I | GTAC | 4 cut(s) | 355, 948, 1950, 2085 |
| CviAII | CATG | 7 cut(s) | 48, 803, 989, 1137, 1602, 1648, 1663 |
| CviQI | GTAC | 4 cut(s) | 355, 948, 1950, 2085 |
| DdeI | CTNAG | 5 cut(s) | 55, 448, 627, 957, 1953 |
| DpnI | GATC | 9 cut(s) | 36, 222, 474, 707, 738, 1374, 1380, 1478, 1607 |
| DpnII | GATC | 9 cut(s) | 34, 220, 472, 705, 736, 1372, 1378, 1476, 1605 |
| DriI | GACNNNNNGTC | 1 cut(s) | 1357 |
| Eam1104I | CTCTTC | 4 cut(s) | 127, 338, 564, 1791 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 1357 |
| EarI | CTCTTC | 4 cut(s) | 127, 338, 564, 1791 |
| EciI | GGCGGA | 1 cut(s) | 669 |
| Ecl136II | GAGCTC | 2 cut(s) | 15, 379 |
| Eco130I | CCWWGG | 2 cut(s) | 1601, 1662 |
| Eco24I | GRGCYC | 3 cut(s) | 17, 381, 413 |
| Eco47I | GGWCC | 2 cut(s) | 677, 1395 |
| Eco53kI | GAGCTC | 2 cut(s) | 15, 379 |
| Eco57I | CTGAAG | 3 cut(s) | 23, 77, 2063 |
| Eco91I | GGTNACC | 1 cut(s) | 1449 |
| EcoICRI | GAGCTC | 2 cut(s) | 15, 379 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 804 |
| EcoO109I | RGGNCCY | 2 cut(s) | 677, 1121 |
| EcoO65I | GGTNACC | 1 cut(s) | 1449 |
| EcoRI | GAATTC | 3 cut(s) | 253, 262, 268 |
| EcoRII | CCWGG | 3 cut(s) | 682, 1849, 1964 |
| EcoT14I | CCWWGG | 2 cut(s) | 1601, 1662 |
| EcoT38I | GRGCYC | 3 cut(s) | 17, 381, 413 |
| ErhI | CCWWGG | 2 cut(s) | 1601, 1662 |
| Esp3I | CGTCTC | 1 cut(s) | 780 |
| FaeI | CATG | 7 cut(s) | 51, 806, 992, 1140, 1605, 1651, 1666 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 686, 718 |
| FaqI | GGGAC | 1 cut(s) | 618 |
| FatI | CATG | 7 cut(s) | 47, 802, 988, 1136, 1601, 1647, 1662 |
| FauNDI | CATATG | 1 cut(s) | 888 |
| FbaI | TGATCA | 2 cut(s) | 705, 736 |
| FokI | GGATG | 4 cut(s) | 620, 841, 1214, 1561 |
| FriOI | GRGCYC | 3 cut(s) | 17, 381, 413 |
| FspAI | RTGCGCAY | 1 cut(s) | 150 |
| FspBI | CTAG | 5 cut(s) | 720, 974, 1376, 1907, 1913 |
| FspI | TGCGCA | 1 cut(s) | 150 |
| GlaI | GCGC | 1 cut(s) | 150 |
| GsuI | CTGGAG | 2 cut(s) | 705, 1832 |
| HaeIII | GGCC | 4 cut(s) | 214, 588, 1123, 1487 |
| HapII | CCGG | 5 cut(s) | 200, 234, 1419, 1862, 1900 |
| HgaI | GACGC | 1 cut(s) | 1890 |
| HhaI | GCGC | 1 cut(s) | 151 |
| Hin1II | CATG | 7 cut(s) | 51, 806, 992, 1140, 1605, 1651, 1666 |
| Hin6I | GCGC | 1 cut(s) | 149 |
| HinP1I | GCGC | 1 cut(s) | 149 |
| HpaII | CCGG | 5 cut(s) | 200, 234, 1419, 1862, 1900 |
| HphI | GGTGA | 5 cut(s) | 446, 682, 1079, 1522, 2059 |
| Hpy166II | GTNNAC | 1 cut(s) | 463 |
| Hpy188III | TCNNGA | 7 cut(s) | 618, 1109, 1376, 1648, 1697, 1738, 1843 |
| Hpy8I | GTNNAC | 1 cut(s) | 463 |
| Hpy99I | CGWCG | 4 cut(s) | 138, 199, 286, 1245 |
| HpyAV | CCTTC | 7 cut(s) | 101, 399, 438, 487, 1032, 1084, 2038 |
| HpyCH4III | ACNGT | 6 cut(s) | 118, 521, 569, 1198, 1301, 1324 |
| HpyCH4IV | ACGT | 1 cut(s) | 281 |
| HpyF10VI | GCNNNNNNNGC | 8 cut(s) | 358, 594, 941, 1211, 1571, 1729, 1867, 1909 |
| HpyF3I | CTNAG | 5 cut(s) | 55, 448, 627, 957, 1953 |
| HpySE526I | ACGT | 1 cut(s) | 281 |
| Hsp92II | CATG | 7 cut(s) | 51, 806, 992, 1140, 1605, 1651, 1666 |
| HspAI | GCGC | 1 cut(s) | 149 |
| KpnI | GGTACC | 1 cut(s) | 2088 |
| Ksp22I | TGATCA | 2 cut(s) | 705, 736 |
| Kzo9I | GATC | 9 cut(s) | 34, 220, 472, 705, 736, 1372, 1378, 1476, 1605 |
| LguI | GCTCTTC | 1 cut(s) | 564 |
| LmnI | GCTCC | 2 cut(s) | 304, 408 |
| MaeI | CTAG | 5 cut(s) | 720, 974, 1376, 1907, 1913 |
| MaeII | ACGT | 1 cut(s) | 281 |
| MaeIII | GTNAC | 5 cut(s) | 86, 1057, 1449, 1537, 2092 |
| MalI | GATC | 9 cut(s) | 36, 222, 474, 707, 738, 1374, 1380, 1478, 1607 |
| MboI | GATC | 9 cut(s) | 34, 220, 472, 705, 736, 1372, 1378, 1476, 1605 |
| MfeI | CAATTG | 1 cut(s) | 1830 |
| MflI | RGATCY | 5 cut(s) | 34, 472, 1372, 1476, 1605 |
| MhlI | GDGCHC | 5 cut(s) | 17, 363, 381, 413, 559 |
| MlyI | GAGTC | 3 cut(s) | 975, 1259, 1367 |
| MmeI | TCCRAC | 3 cut(s) | 126, 958, 994 |
| MroXI | GAANNNNTTC | 1 cut(s) | 1745 |
| MseI | TTAA | 5 cut(s) | 531, 846, 1326, 1991, 2052 |
| MslI | CAYNNNNRTG | 1 cut(s) | 1135 |
| MspA1I | CMGCKG | 1 cut(s) | 1937 |
| MspI | CCGG | 5 cut(s) | 200, 234, 1419, 1862, 1900 |
| MspR9I | CCNGG | 6 cut(s) | 235, 684, 1419, 1851, 1900, 1966 |
| MunI | CAATTG | 1 cut(s) | 1830 |
| MvaI | CCWGG | 3 cut(s) | 684, 1851, 1966 |
| MvnI | CGCG | 1 cut(s) | 639 |
| MwoI | GCNNNNNNNGC | 8 cut(s) | 358, 594, 941, 1211, 1571, 1729, 1867, 1909 |
| NciI | CCSGG | 3 cut(s) | 235, 1419, 1900 |
| NcoI | CCATGG | 2 cut(s) | 1601, 1662 |
| NdeI | CATATG | 1 cut(s) | 888 |
| NdeII | GATC | 9 cut(s) | 34, 220, 472, 705, 736, 1372, 1378, 1476, 1605 |
| NlaIII | CATG | 7 cut(s) | 51, 806, 992, 1140, 1605, 1651, 1666 |
| NlaIV | GGNNCC | 4 cut(s) | 410, 1122, 1607, 2086 |
| NsbI | TGCGCA | 1 cut(s) | 150 |
| NspI | RCATGY | 1 cut(s) | 1140 |
| NspV | TTCGAA | 2 cut(s) | 266, 562 |
| PagI | TCATGA | 1 cut(s) | 1647 |
| PciI | ACATGT | 1 cut(s) | 1136 |
| PciSI | GCTCTTC | 1 cut(s) | 564 |
| PcsI | WCGNNNNNNNCGW | 3 cut(s) | 142, 257, 278 |
| PdmI | GAANNNNTTC | 1 cut(s) | 1745 |
| PfeI | GAWTC | 9 cut(s) | 190, 1018, 1597, 1693, 1706, 1741, 1846, 1960, 1975 |
| PfoI | TCCNGGA | 2 cut(s) | 233, 682 |
| PleI | GAGTC | 3 cut(s) | 974, 1259, 1366 |
| PpsI | GAGTC | 3 cut(s) | 974, 1259, 1366 |
| PpuMI | RGGWCCY | 1 cut(s) | 677 |
| PscI | ACATGT | 1 cut(s) | 1136 |
| PshBI | ATTAAT | 1 cut(s) | 531 |
| Psp124BI | GAGCTC | 2 cut(s) | 17, 381 |
| Psp5II | RGGWCCY | 1 cut(s) | 677 |
| Psp6I | CCWGG | 3 cut(s) | 682, 1849, 1964 |
| PspEI | GGTNACC | 1 cut(s) | 1449 |
| PspGI | CCWGG | 3 cut(s) | 682, 1849, 1964 |
| PspN4I | GGNNCC | 4 cut(s) | 410, 1122, 1607, 2086 |
| PspPI | GGNCC | 3 cut(s) | 677, 1121, 1395 |
| PspPPI | RGGWCCY | 1 cut(s) | 677 |
| PstNI | CAGNNNCTG | 1 cut(s) | 1952 |
| PsuI | RGATCY | 5 cut(s) | 34, 472, 1372, 1476, 1605 |
| PvuII | CAGCTG | 1 cut(s) | 1937 |
| RsaI | GTAC | 4 cut(s) | 356, 949, 1951, 2086 |
| RsaNI | GTAC | 4 cut(s) | 355, 948, 1950, 2085 |
| RseI | CAYNNNNRTG | 1 cut(s) | 1135 |
| SacI | GAGCTC | 2 cut(s) | 17, 381 |
| SapI | GCTCTTC | 1 cut(s) | 564 |
| SaqAI | TTAA | 5 cut(s) | 531, 846, 1326, 1991, 2052 |
| Sau3AI | GATC | 9 cut(s) | 34, 220, 472, 705, 736, 1372, 1378, 1476, 1605 |
| Sau96I | GGNCC | 3 cut(s) | 677, 1121, 1395 |
| ScaI | AGTACT | 1 cut(s) | 949 |
| SchI | GAGTC | 3 cut(s) | 975, 1259, 1367 |
| ScrFI | CCNGG | 6 cut(s) | 235, 684, 1419, 1851, 1900, 1966 |
| SduI | GDGCHC | 5 cut(s) | 17, 363, 381, 413, 559 |
| SfuI | TTCGAA | 2 cut(s) | 266, 562 |
| SinI | GGWCC | 2 cut(s) | 677, 1395 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 1135 |
| SmlI | CTYRAG | 1 cut(s) | 1481 |
| SmoI | CTYRAG | 1 cut(s) | 1481 |
| SpeI | ACTAGT | 1 cut(s) | 973 |
| SsiI | CCGC | 5 cut(s) | 290, 637, 654, 1253, 2073 |
| SspMI | CTAG | 5 cut(s) | 720, 974, 1376, 1907, 1913 |
| SstI | GAGCTC | 2 cut(s) | 17, 381 |
| StyD4I | CCNGG | 6 cut(s) | 233, 682, 1417, 1849, 1898, 1964 |
| StyI | CCWWGG | 2 cut(s) | 1601, 1662 |
| TaaI | ACNGT | 6 cut(s) | 118, 521, 569, 1198, 1301, 1324 |
| TaiI | ACGT | 1 cut(s) | 284 |
| TatI | WGTACW | 1 cut(s) | 947 |
| TauI | GCSGC | 1 cut(s) | 292 |
| TfiI | GAWTC | 9 cut(s) | 190, 1018, 1597, 1693, 1706, 1741, 1846, 1960, 1975 |
| Tru1I | TTAA | 5 cut(s) | 531, 846, 1326, 1991, 2052 |
| Tru9I | TTAA | 5 cut(s) | 531, 846, 1326, 1991, 2052 |
| TscAI | CASTG | 3 cut(s) | 882, 1461, 1815 |
| TspGWI | ACGGA | 3 cut(s) | 183, 804, 1229 |
| TspRI | CASTG | 3 cut(s) | 882, 1461, 1815 |
| VpaK11BI | GGWCC | 2 cut(s) | 677, 1395 |
| VspI | ATTAAT | 1 cut(s) | 531 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 804 |
| XapI | RAATTY | 6 cut(s) | 204, 253, 262, 268, 1622, 1942 |
| XbaI | TCTAGA | 1 cut(s) | 1375 |
| XceI | RCATGY | 1 cut(s) | 1140 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 1669 |
| XmnI | GAANNNNTTC | 1 cut(s) | 1745 |
| XspI | CTAG | 5 cut(s) | 720, 974, 1376, 1907, 1913 |
| ZrmI | AGTACT | 1 cut(s) | 949 |