Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr6

Orthogroup ID

OG0008253

Physical Location & Seq

Genomic Coordinates Forward (+)

13561245 .. 13564756

Gene Structure 3512 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000027652

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2088 bp

ATGACATCTCTGACCTCCCAATTCGTGCTCCTTGATCTCCAGAACTCATGGCACTCCGCCACCCAATTCCCCATCTCCACCCTCTGTTTTCTCCAGACCTCCAACTTCGTCTCCACACTCTCTTCCTCATTTCGTCGTACACGTGGCGTGCATAGGGGAATTGCTTCTTCCTCCAAACACTCCTCGTCGCCGGCGATTCGCCGCCCGTCGGATCGGTTCTTCTCCGGGAATGGGTCGTCGTCGAATAATTCGGGGAGCTCGGCTTCCACGTCGCAGACCCAGGCCGCGTCGGAGCTGGAGCTGTTTCTGGAGTTGTTGCCGGAGAGGATGAAGAGCGAGCTGTACAGGCATGAGGAGATCGGCAGGCTCATTGAGGTCGTCATGGATTTGGGGAGGCCTCCGATTGCCAGGTTTCCTACCGGCGATTGGGTCATCTCGGAAAATCCCGTCAGCCAAGAAGATCTCCGGCTCGCTGTATCCAAGGTTAGTGAGTTTTCAGATGACAACCGTTCTGGTATTAATAACTCATTACACCGGATAAGTGCTATCCGAAACCGAAAGCTGCAAATCATTGGACTTACTTGCCGGGTGGGGAGAGCTGTGTCAGGAAGTGCGGAGATTATCCGTGACTTGGTTGAGGGTGGTGGTTCAATCTTGGTCATAGGACCTCCTGGAGTTGGCAAGACAACCTTGATCAGAGAAATTGCTAGAATGTTGGCAGATGAGCATATGAAGCGTGTTGTCATTGTGGATACATCGAATGAGATTGGGGGAGATGGAGATGTACCTCATGCGGGAATAGGCCGTGCAAGGAGGATGCAAGTTCCTAATGTGAACATGCAGCATAATGTTATGATTGAAGCAGTTGAAAATCATATGCCTCAAACCATTATAATAGATGAAATTGGGACAGAGCTTGAAGCATTGGCTTCCAGTACTATTGCTCAAAGAGGAGTTCAGCTAGTTGGAACAGCACATGGAATGACGATAGACAACATAATAAAGAATCCTTCTTTACAAATCCTTGTTGGTGGCATAGAGAGTGTGACCCTGGGAGATGAAGAAGCAAGAAAGAGAAAAGTTCAAAAGACAATTCTTGAAAGAAAGGGGCCTCCTACATTTACATGTGCTGTTGAGATTATATCTAAAACAGAGTTTCGTGTTCATCACAGATTAGATGCAACCGTGGATGCTATACTAGCTGGAAAATCTCCTCTGTTTGAAGTTCGTCGTACTGATGGGGATGCTGATGACTCTTGCATGTCTACTCAAATATCTGAACCGAACTATCAAAAAGTATCAGATTTTGGTGTTACTAAAGACATTATTGCTAGTGTTTTGGAGTCTGACGAGGAAGATCTGGATCCTTCACCCAATGTGTCTAGAAGATTGAGCAGTGATAAATCTGTGAAGAAGAGAAGTTCACCAGTGTGTATATATACATACAAGATCCTTGAAGCTGACCTACTGCAAGTAGCACAGGTGATGGGGCTTGAGGATGAAATTGAGGTCACTGATGATATTGGAACAGCAGATGCAATTATAGCATCCAGTTCTGAGATGAAGCAAAACCCATGGATTCGTGGTGTAGCAAAATTCCACCAGTTGCCTGTATTTGTCATGAAGTCAAATACCATGGCACAAATCGTGAAGGCAGTTCGTACGATTCTTGAAATGGAATCAGTTGGTTCTTTGCCAAAGCAGCTTGTCAATAATTCCTTTGACGTTGAAATTGAAGATGATGCACCCAAAAGAAAACCATCTTTAGAAGAGATTGATGCATTGGAGGAGGTTCGACTTGCAATCGAGTATATAGTGATTCCTGGTGGAGAGCCCGTAGAGCTCCTTCCAAGACGCTCCGAAATAATTGCCAGACAGCTGGAGCTGGTGGAAAGTTATCAGTTGGCTGCTGAAAATTCAGGTACTAAGCGCAATCCGAGGTTGCAGATTCTTCCCATGAGGCTAAACAAGAAGAGTTCTTCGAAACCTGTTCAATCCGGTTCTATGAAACCTACTAACTCTAAATCACTGACTGGTGGTGGTGGAGGTAGCAGTGTTACTAGGCTCCCCCTTTTATCAGAACAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009536 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AAA

Protein Analysis

696

Amino Acids

76.05

Weight (kDa)

5.93

Isoelectric Point (pI)

53.9

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Spore_III_AA	PF19568	190 - 343	4.8e-13	Sporulation stage III, protein AA
AAA	PF00004	218 - 303	8e-06	ATPase family associated with various cellular activities (AAA)
PTPase	PF25516	477 - 557	3.6e-28	Phosphotyrosine protein phosphatase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008253)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G10420 AT3G10420
fragaria_vesca	FvH4_7g18530 FvH4_7g18530 FvH4_7g18530
malus_domestica	MD01G1101700.v1.1 MD07G1168300.v1.1
prunus_persica	Prupe.2G206900_v2.0.a1
pyrus_communis	pycom01g12830 pycom07g16270
rosa_chinensis	RchiOBHm_Chr1g0362311
rosa_laevigata	RLG00000027652
rosa_multiflora	Rmu_sc0013178.1_g000001 Rmu_sc0037182.1_g000001
rosa_roxburghii	Rroxscaffold_4G00294260
rosa_rugosa	Rorug01G0297300.1 Rorug01G0297400 Rorug01G0297500
rosa_samantha	Rh1AG306200 Rh1BG269700 Rh1CG287200 Rh1DG299900
rosa_wichuraiana	Rw1G027180

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	893
AccI	GTMKAC	1 cut(s)	1265
AccII	CGCG	1 cut(s)	287
AciI	CCGC	5 cut(s)	57, 202, 285, 614, 794
AclWI	GGATC	4 cut(s)	219, 1358, 1371, 1444
AcsI	RAATTY	2 cut(s)	1595, 1915
AcvI	CACGTG	1 cut(s)	143
AfaI	GTAC	7 cut(s)	139, 344, 786, 937, 1234, 1663, 1924
AfiI	CCNNNNNNNGG	6 cut(s)	208, 231, 426, 631, 677, 794
AflIII	ACRYGT	2 cut(s)	140, 1124
AjiI	CACGTC	1 cut(s)	270
AjnI	CCWGG	5 cut(s)	279, 407, 670, 1050, 1822
AleI	CACNNNNGTG	1 cut(s)	1429
Alw21I	GWGCWC	3 cut(s)	30, 260, 1845
Alw26I	GTCTC	1 cut(s)	115
AlwI	GGATC	4 cut(s)	219, 1358, 1371, 1444
AoxI	GGCC	4 cut(s)	282, 395, 802, 1109
ApeKI	GCWGC	4 cut(s)	562, 841, 1702, 1907
ApoI	RAATTY	2 cut(s)	1595, 1915
AseI	ATTAAT	1 cut(s)	519
Asp700I	GAANNNNTTC	1 cut(s)	163
AspLEI	GCGC	1 cut(s)	1932
AspS9I	GGNCC	2 cut(s)	665, 1109
AsuC2I	CCSGG	2 cut(s)	226, 587
AsuHPI	GGTGA	3 cut(s)	1362, 1416, 1495
AsuII	TTCGAA	1 cut(s)	1982
AvaII	GGWCC	1 cut(s)	665
BamHI	GGATCC	1 cut(s)	1363
BanII	GRGCYC	3 cut(s)	260, 1836, 1845
BarI	GAAGNNNNNNTAC	4 cut(s)	1449, 1481, 1830, 1862
BbrPI	CACGTG	1 cut(s)	143
Bbv12I	GWGCWC	3 cut(s)	30, 260, 1845
BbvI	GCAGC	4 cut(s)	549, 853, 1714, 1894
BccI	CCATC	5 cut(s)	80, 770, 1232, 1480, 1768
BceAI	ACGGC	1 cut(s)	789
BcgI	CGANNNNNNTGC	2 cut(s)	1850, 1884
BciT130I	CCWGG	5 cut(s)	281, 409, 672, 1052, 1824
BciVI	GTATCC	2 cut(s)	487, 745
BclI	TGATCA	1 cut(s)	693
BcnI	CCSGG	2 cut(s)	226, 587
BcoDI	GTCTC	1 cut(s)	115
BfaI	CTAG	6 cut(s)	708, 962, 1199, 1332, 1383, 2061
BfuI	GTATCC	2 cut(s)	487, 745
BglII	AGATCT	2 cut(s)	460, 1357
BisI	GCNGC	6 cut(s)	202, 285, 563, 842, 1703, 1908
BlsI	GCNGC	6 cut(s)	203, 286, 564, 843, 1704, 1909
BmcAI	AGTACT	1 cut(s)	937
Bme1390I	CCNGG	7 cut(s)	226, 281, 409, 587, 672, 1052, 1824
Bme18I	GGWCC	1 cut(s)	665
BmgBI	CACGTC	1 cut(s)	270
BmgT120I	GGNCC	2 cut(s)	665, 1109
BmiI	GGNNCC	3 cut(s)	1110, 1365, 2066
BmrFI	CCNGG	7 cut(s)	226, 281, 409, 587, 672, 1052, 1824
BmsI	GCATC	8 cut(s)	807, 1168, 1180, 1234, 1525, 1556, 1732, 1768
BpmI	CTGGAG	6 cut(s)	23, 77, 317, 329, 693, 1901
Bpu14I	TTCGAA	1 cut(s)	1982
BpuEI	CTTGAG	1 cut(s)	1514
BpuMI	CCSGG	2 cut(s)	226, 587
BsaAI	YACGTR	1 cut(s)	143
BsaBI	GATNNNNATC	1 cut(s)	1362
BsaJI	CCNNGG	8 cut(s)	279, 480, 1050, 1051, 1185, 1574, 1635, 1937
BsaWI	WCCGGW	2 cut(s)	534, 1997
BsaXI	ACNNNNNCTCC	4 cut(s)	95, 125, 1821, 1851
Bsc4I	CCNNNNNNNGG	6 cut(s)	208, 231, 426, 631, 677, 794
Bse118I	RCCGGY	2 cut(s)	190, 419
Bse1I	ACTGG	5 cut(s)	933, 1427, 1551, 1603, 2038
Bse8I	GATNNNNATC	1 cut(s)	1362
BseBI	CCWGG	5 cut(s)	281, 409, 672, 1052, 1824
BseDI	CCNNGG	8 cut(s)	279, 480, 1050, 1051, 1185, 1574, 1635, 1937
BseGI	GGATG	6 cut(s)	333, 822, 1195, 1249, 1504, 1547
BseJI	GATNNNNATC	1 cut(s)	1362
BseLI	CCNNNNNNNGG	6 cut(s)	208, 231, 426, 631, 677, 794
BseMII	CTCAG	1 cut(s)	1548
BseNI	ACTGG	5 cut(s)	933, 1427, 1551, 1603, 2038
BseRI	GAGGAG	5 cut(s)	172, 368, 966, 1203, 1802
BseXI	GCAGC	4 cut(s)	549, 853, 1714, 1894
Bsh1236I	CGCG	1 cut(s)	287
BshFI	GGCC	4 cut(s)	284, 397, 804, 1111
BsiHKAI	GWGCWC	3 cut(s)	30, 260, 1845
BsiSI	CCGG	8 cut(s)	191, 225, 320, 420, 466, 535, 586, 1998
BsiWI	CGTACG	1 cut(s)	1661
BslFI	GGGAC	1 cut(s)	922
BslI	CCNNNNNNNGG	6 cut(s)	208, 231, 426, 631, 677, 794
BsmAI	GTCTC	1 cut(s)	115
BsmBI	CGTCTC	1 cut(s)	115
BsmFI	GGGAC	1 cut(s)	922
BsnI	GGCC	4 cut(s)	284, 397, 804, 1111
Bsp119I	TTCGAA	1 cut(s)	1982
Bsp1286I	GDGCHC	4 cut(s)	30, 260, 1836, 1845
Bsp1407I	TGTACA	1 cut(s)	342
Bsp143I	GATC	8 cut(s)	34, 211, 357, 460, 693, 1357, 1363, 1449
Bsp19I	CCATGG	2 cut(s)	1574, 1635
BspACI	CCGC	5 cut(s)	57, 202, 285, 614, 794
BspANI	GGCC	4 cut(s)	284, 397, 804, 1111
BspCNI	CTCAG	1 cut(s)	1549
BspFNI	CGCG	1 cut(s)	287
BspHI	TCATGA	1 cut(s)	1620
BspLI	GGNNCC	3 cut(s)	1110, 1365, 2066
BspPI	GGATC	4 cut(s)	219, 1358, 1371, 1444
BspQI	GCTCTTC	1 cut(s)	326
BspT104I	TTCGAA	1 cut(s)	1982
BsrFI	RCCGGY	2 cut(s)	190, 419
BsrGI	TGTACA	1 cut(s)	342
BsrI	ACTGG	5 cut(s)	933, 1427, 1551, 1603, 2038
BssAI	RCCGGY	2 cut(s)	190, 419
BssECI	CCNNGG	8 cut(s)	279, 480, 1050, 1051, 1185, 1574, 1635, 1937
BssMI	GATC	8 cut(s)	34, 211, 357, 460, 693, 1357, 1363, 1449
BssT1I	CCWWGG	3 cut(s)	480, 1574, 1635
Bst2UI	CCWGG	5 cut(s)	281, 409, 672, 1052, 1824
Bst4CI	ACNGT	2 cut(s)	509, 1186
Bst6I	CTCTTC	5 cut(s)	127, 326, 1409, 1764, 1967
BstAUI	TGTACA	1 cut(s)	342
BstBAI	YACGTR	1 cut(s)	143
BstBI	TTCGAA	1 cut(s)	1982
BstC8I	GCNNGC	5 cut(s)	149, 192, 338, 365, 471
BstDEI	CTNAG	2 cut(s)	1557, 1926
BstDSI	CCRYGG	3 cut(s)	1185, 1574, 1635
BstF5I	GGATG	6 cut(s)	333, 822, 1195, 1249, 1504, 1547
BstFNI	CGCG	1 cut(s)	287
BstHHI	GCGC	1 cut(s)	1932
BstKTI	GATC	8 cut(s)	37, 214, 360, 463, 696, 1360, 1366, 1452
BstMAI	GTCTC	1 cut(s)	115
BstMBI	GATC	8 cut(s)	34, 211, 357, 460, 693, 1357, 1363, 1449
BstMWI	GCNNNNNNNGC	6 cut(s)	346, 733, 1199, 1544, 1702, 1840
BstNI	CCWGG	5 cut(s)	281, 409, 672, 1052, 1824
BstNSI	RCATGY	3 cut(s)	841, 1128, 1264
BstSCI	CCNGG	7 cut(s)	224, 279, 407, 585, 670, 1050, 1822
BstUI	CGCG	1 cut(s)	287
BstV1I	GCAGC	4 cut(s)	549, 853, 1714, 1894
BstX2I	RGATCY	4 cut(s)	460, 1357, 1363, 1449
BstXI	CCANNNNNNTGG	1 cut(s)	1879
BstYI	RGATCY	4 cut(s)	460, 1357, 1363, 1449
BsuI	GTATCC	2 cut(s)	487, 745
BsuRI	GGCC	4 cut(s)	284, 397, 804, 1111
BtgI	CCRYGG	3 cut(s)	1185, 1574, 1635
BtrI	CACGTC	1 cut(s)	270
BtsCI	GGATG	6 cut(s)	333, 822, 1195, 1249, 1504, 1547
BtsI	GCAGTG	2 cut(s)	1402, 2059
BtsIMutI	CAGTG	5 cut(s)	1402, 1434, 1512, 2027, 2059
Cac8I	GCNNGC	5 cut(s)	149, 192, 338, 365, 471
CciI	TCATGA	1 cut(s)	1620
CfoI	GCGC	1 cut(s)	1932
Cfr10I	RCCGGY	2 cut(s)	190, 419
Cfr13I	GGNCC	2 cut(s)	665, 1109
CseI	GACGC	2 cut(s)	276, 1863
Csp6I	GTAC	7 cut(s)	138, 343, 785, 936, 1233, 1662, 1923
CviQI	GTAC	7 cut(s)	138, 343, 785, 936, 1233, 1662, 1923
DdeI	CTNAG	2 cut(s)	1557, 1926
DpnI	GATC	8 cut(s)	36, 213, 359, 462, 695, 1359, 1365, 1451
DpnII	GATC	8 cut(s)	34, 211, 357, 460, 693, 1357, 1363, 1449
Eam1104I	CTCTTC	5 cut(s)	127, 326, 1409, 1764, 1967
EarI	CTCTTC	5 cut(s)	127, 326, 1409, 1764, 1967
EciI	GGCGGA	1 cut(s)	46
Ecl136II	GAGCTC	2 cut(s)	258, 1843
Eco130I	CCWWGG	3 cut(s)	480, 1574, 1635
Eco147I	AGGCCT	1 cut(s)	397
Eco24I	GRGCYC	3 cut(s)	260, 1836, 1845
Eco47I	GGWCC	1 cut(s)	665
Eco53kI	GAGCTC	2 cut(s)	258, 1843
Eco72I	CACGTG	1 cut(s)	143
EcoICRI	GAGCTC	2 cut(s)	258, 1843
EcoO109I	RGGNCCY	2 cut(s)	665, 1109
EcoRII	CCWGG	5 cut(s)	279, 407, 670, 1050, 1822
EcoT14I	CCWWGG	3 cut(s)	480, 1574, 1635
EcoT22I	ATGCAT	1 cut(s)	1783
EcoT38I	GRGCYC	3 cut(s)	260, 1836, 1845
ErhI	CCWWGG	3 cut(s)	480, 1574, 1635
Esp3I	CGTCTC	1 cut(s)	115
FalI	AAGNNNNNCTT	2 cut(s)	674, 706
FaqI	GGGAC	1 cut(s)	922
FauI	CCCGC	1 cut(s)	787
FauNDI	CATATG	2 cut(s)	729, 876
FbaI	TGATCA	1 cut(s)	693
FblI	GTMKAC	1 cut(s)	1265
Fnu4HI	GCNGC	6 cut(s)	202, 285, 563, 842, 1703, 1908
FokI	GGATG	6 cut(s)	340, 829, 1202, 1256, 1511, 1534
FriOI	GRGCYC	3 cut(s)	260, 1836, 1845
Fsp4HI	GCNGC	6 cut(s)	202, 285, 563, 842, 1703, 1908
FspBI	CTAG	6 cut(s)	708, 962, 1199, 1332, 1383, 2061
GlaI	GCGC	1 cut(s)	1931
GluI	GCNGC	6 cut(s)	202, 285, 563, 842, 1703, 1908
GsuI	CTGGAG	6 cut(s)	23, 77, 317, 329, 693, 1901
HaeIII	GGCC	4 cut(s)	284, 397, 804, 1111
HapII	CCGG	8 cut(s)	191, 225, 320, 420, 466, 535, 586, 1998
HgaI	GACGC	2 cut(s)	276, 1863
HhaI	GCGC	1 cut(s)	1932
Hin6I	GCGC	1 cut(s)	1930
HinP1I	GCGC	1 cut(s)	1930
HinfI	GANTC	9 cut(s)	196, 1006, 1253, 1343, 1579, 1666, 1679, 1819, 1948
HpaII	CCGG	8 cut(s)	191, 225, 320, 420, 466, 535, 586, 1998
HphI	GGTGA	3 cut(s)	1362, 1416, 1495
Hpy166II	GTNNAC	4 cut(s)	140, 835, 1266, 1424
Hpy8I	GTNNAC	4 cut(s)	140, 835, 1266, 1424
Hpy99I	CGWCG	8 cut(s)	138, 190, 211, 241, 244, 274, 292, 1233
HpyAV	CCTTC	4 cut(s)	1020, 1377, 1645, 1856
HpyCH4III	ACNGT	2 cut(s)	509, 1186
HpyCH4IV	ACGT	3 cut(s)	142, 269, 1725
HpyF10VI	GCNNNNNNNGC	6 cut(s)	346, 733, 1199, 1544, 1702, 1840
HpyF3I	CTNAG	2 cut(s)	1557, 1926
HpySE526I	ACGT	3 cut(s)	142, 269, 1725
HspAI	GCGC	1 cut(s)	1930
KroI	GCCGGC	1 cut(s)	190
KroNI	GCCGGC	1 cut(s)	192
Ksp22I	TGATCA	1 cut(s)	693
Kzo9I	GATC	8 cut(s)	34, 211, 357, 460, 693, 1357, 1363, 1449
LguI	GCTCTTC	1 cut(s)	326
LmnI	GCTCC	8 cut(s)	33, 255, 292, 298, 1848, 1862, 1882, 2070
Lsp1109I	GCAGC	4 cut(s)	549, 853, 1714, 1894
LweI	GCATC	8 cut(s)	807, 1168, 1180, 1234, 1525, 1556, 1732, 1768
MaeI	CTAG	6 cut(s)	708, 962, 1199, 1332, 1383, 2061
MaeII	ACGT	3 cut(s)	142, 269, 1725
MaeIII	GTNAC	5 cut(s)	626, 1045, 1312, 1510, 2056
MalI	GATC	8 cut(s)	36, 213, 359, 462, 695, 1359, 1365, 1451
MboI	GATC	8 cut(s)	34, 211, 357, 460, 693, 1357, 1363, 1449
MflI	RGATCY	4 cut(s)	460, 1357, 1363, 1449
MhlI	GDGCHC	4 cut(s)	30, 260, 1836, 1845
MlyI	GAGTC	2 cut(s)	1247, 1352
MmeI	TCCRAC	4 cut(s)	126, 189, 270, 946
Mph1103I	ATGCAT	1 cut(s)	1783
MreI	CGCCGGCG	1 cut(s)	190
MroNI	GCCGGC	1 cut(s)	190
MroXI	GAANNNNTTC	1 cut(s)	163
MseI	TTAA	1 cut(s)	519
MslI	CAYNNNNRTG	2 cut(s)	1123, 1429
MspA1I	CMGCKG	1 cut(s)	1879
MspI	CCGG	8 cut(s)	191, 225, 320, 420, 466, 535, 586, 1998
MspR9I	CCNGG	7 cut(s)	226, 281, 409, 587, 672, 1052, 1824
MvaI	CCWGG	5 cut(s)	281, 409, 672, 1052, 1824
MvnI	CGCG	1 cut(s)	287
MwoI	GCNNNNNNNGC	6 cut(s)	346, 733, 1199, 1544, 1702, 1840
NaeI	GCCGGC	1 cut(s)	192
NciI	CCSGG	2 cut(s)	226, 587
NcoI	CCATGG	2 cut(s)	1574, 1635
NdeI	CATATG	2 cut(s)	729, 876
NdeII	GATC	8 cut(s)	34, 211, 357, 460, 693, 1357, 1363, 1449
NgoMIV	GCCGGC	1 cut(s)	190
NlaIV	GGNNCC	3 cut(s)	1110, 1365, 2066
NmeAIII	GCCGAG	1 cut(s)	239
NmuCI	GTSAC	3 cut(s)	626, 1045, 1510
NsiI	ATGCAT	1 cut(s)	1783
NspI	RCATGY	3 cut(s)	841, 1128, 1264
NspV	TTCGAA	1 cut(s)	1982
OliI	CACNNNNGTG	1 cut(s)	1429
PagI	TCATGA	1 cut(s)	1620
PasI	CCCWGGG	1 cut(s)	1051
PceI	AGGCCT	1 cut(s)	397
PciI	ACATGT	1 cut(s)	1124
PciSI	GCTCTTC	1 cut(s)	326
PcsI	WCGNNNNNNNCGW	3 cut(s)	139, 191, 266
PdiI	GCCGGC	1 cut(s)	192
PdmI	GAANNNNTTC	1 cut(s)	163
PfeI	GAWTC	7 cut(s)	196, 1006, 1579, 1666, 1679, 1819, 1948
Pfl23II	CGTACG	1 cut(s)	1661
PfoI	TCCNGGA	2 cut(s)	224, 670
PkrI	GCNGC	6 cut(s)	203, 286, 564, 843, 1704, 1909
PleI	GAGTC	2 cut(s)	1247, 1351
PmaCI	CACGTG	1 cut(s)	143
PmlI	CACGTG	1 cut(s)	143
PpsI	GAGTC	2 cut(s)	1247, 1351
Ppu21I	YACGTR	1 cut(s)	143
PpuMI	RGGWCCY	1 cut(s)	665
PscI	ACATGT	1 cut(s)	1124
PshBI	ATTAAT	1 cut(s)	519
PsiI	TTATAA	1 cut(s)	893
Psp124BI	GAGCTC	2 cut(s)	260, 1845
Psp5II	RGGWCCY	1 cut(s)	665
Psp6I	CCWGG	5 cut(s)	279, 407, 670, 1050, 1822
PspCI	CACGTG	1 cut(s)	143
PspGI	CCWGG	5 cut(s)	279, 407, 670, 1050, 1822
PspLI	CGTACG	1 cut(s)	1661
PspN4I	GGNNCC	3 cut(s)	1110, 1365, 2066
PspPI	GGNCC	2 cut(s)	665, 1109
PspPPI	RGGWCCY	1 cut(s)	665
PsuI	RGATCY	4 cut(s)	460, 1357, 1363, 1449
PvuII	CAGCTG	1 cut(s)	1879
RsaI	GTAC	7 cut(s)	139, 344, 786, 937, 1234, 1663, 1924
RsaNI	GTAC	7 cut(s)	138, 343, 785, 936, 1233, 1662, 1923
RseI	CAYNNNNRTG	2 cut(s)	1123, 1429
SacI	GAGCTC	2 cut(s)	260, 1845
SapI	GCTCTTC	1 cut(s)	326
SaqAI	TTAA	1 cut(s)	519
SatI	GCNGC	6 cut(s)	202, 285, 563, 842, 1703, 1908
Sau3AI	GATC	8 cut(s)	34, 211, 357, 460, 693, 1357, 1363, 1449
Sau96I	GGNCC	2 cut(s)	665, 1109
ScaI	AGTACT	1 cut(s)	937
SchI	GAGTC	2 cut(s)	1247, 1352
ScrFI	CCNGG	7 cut(s)	226, 281, 409, 587, 672, 1052, 1824
SduI	GDGCHC	4 cut(s)	30, 260, 1836, 1845
SfaNI	GCATC	8 cut(s)	807, 1168, 1180, 1234, 1525, 1556, 1732, 1768
SfuI	TTCGAA	1 cut(s)	1982
SgrAI	CRCCGGYG	1 cut(s)	190
SinI	GGWCC	1 cut(s)	665
SmiMI	CAYNNNNRTG	2 cut(s)	1123, 1429
SmlI	CTYRAG	1 cut(s)	1493
SmoI	CTYRAG	1 cut(s)	1493
SseBI	AGGCCT	1 cut(s)	397
SsiI	CCGC	5 cut(s)	57, 202, 285, 614, 794
SspMI	CTAG	6 cut(s)	708, 962, 1199, 1332, 1383, 2061
SstI	GAGCTC	2 cut(s)	260, 1845
StuI	AGGCCT	1 cut(s)	397
StyD4I	CCNGG	7 cut(s)	224, 279, 407, 585, 670, 1050, 1822
StyI	CCWWGG	3 cut(s)	480, 1574, 1635
TaaI	ACNGT	2 cut(s)	509, 1186
TaiI	ACGT	3 cut(s)	145, 272, 1728
TaqI	TCGA	5 cut(s)	242, 758, 1795, 1806, 1982
TatI	WGTACW	2 cut(s)	342, 935
TauI	GCSGC	2 cut(s)	204, 287
TfiI	GAWTC	7 cut(s)	196, 1006, 1579, 1666, 1679, 1819, 1948
Tru1I	TTAA	1 cut(s)	519
Tru9I	TTAA	1 cut(s)	519
TscAI	CASTG	5 cut(s)	1402, 1434, 1519, 2034, 2059
TseFI	GTSAC	3 cut(s)	626, 1045, 1510
TseI	GCWGC	4 cut(s)	562, 841, 1702, 1907
Tsp45I	GTSAC	3 cut(s)	626, 1045, 1510
TspDTI	ATGAA	9 cut(s)	344, 746, 915, 1074, 1154, 1515, 1577, 1637, 2021
TspGWI	ACGGA	1 cut(s)	614
TspRI	CASTG	5 cut(s)	1402, 1434, 1519, 2034, 2059
VpaK11BI	GGWCC	1 cut(s)	665
VspI	ATTAAT	1 cut(s)	519
XapI	RAATTY	2 cut(s)	1595, 1915
XbaI	TCTAGA	1 cut(s)	1382
XceI	RCATGY	3 cut(s)	841, 1128, 1264
XmiI	GTMKAC	1 cut(s)	1265
XmnI	GAANNNNTTC	1 cut(s)	163
XspI	CTAG	6 cut(s)	708, 962, 1199, 1332, 1383, 2061
ZrmI	AGTACT	1 cut(s)	937
Zsp2I	ATGCAT	1 cut(s)	1783

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.