Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1D

Orthogroup ID

OG0008253

Physical Location & Seq

Genomic Coordinates Reverse (-)

52566413 .. 52570329

Gene Structure 3917 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1DG299900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2082 bp

ATGACAGCTCTGACCTCCCAATTCGTGCTCCTTGATCTCCAGAACTCATGGCACTCCGCCACCCAATTCCCCATCTCCACCCTCTGTTTTCTCCAGACCTCCAACTTCGTCTCCACACTCTCTTCCTCATTTCGTCGAACACGTGGCGTGCATAGGGGAATTGCTTCGTCCAAACACTCCTCGTCGCCGGCGATTCGCCGCCCGTCGGATCGGTTCTTCTCCGGGAATGGGTCGTCGTCGAATTCGGGGAGCTCGGCTTCCACGTCGCAGACCCAGGCCGCGTCGGAGCTGGAGCTGTTTCTGGAGTTGTTGCCGGAGAGGATGAAGAGCGAGCTGTACAGGCATGAGGAGGTCGGCAGGCTCATTGAGGTCGTCATGGATTTGGGGAGGCCTCCGATTGCCAGGTTTCCTACCGGCGATTGGGTCATCTCGGAAAATCCCGTCAGCCAAGAAGATCTCCGGCTCGCCATATCCAAGGTTAGTGAGTTTTCAGATGACAACCGTTCTGGTATTAATAACTCATTACACAGGATAAGTGCTATCCGAAACCGAAAGCTGCAAATCATTGGACTTACTTGCCGGGTGGGGAGAGCTGTGTCAGGAAGTGCGGAGATTATCCGTGACTTGGTTGAGGGTGGTGGTTCAATCTTGGTTATAGGACCTCCTGGAGTTGGCAAGACAACCTTGATCAGGGAAATAGCTAGAATGTTGGCAGATGAGCATATGAAGCGTGTCGTCATTGTGGATACATCGAATGAGATTGGGGGAGATGGTGATGTTCCTCATGCAGGAATAGGTCGTGCAAGGAGGATGCAAGTTCCTAATGTGAACATGCAGCATAATGTTATGATTGAAGCAGTTGAAAATCATATGCCTCAAACCATTATAATAGATGAAATTGGGACAGAGCTTGAAGCATTGGCTTCCAGTACTATTGCTCAAAGAGGAGTTCAGCTAGTTGGAACAGCACATGGAATGACGATAGACAATATAATAAAGAATCCTTCTTTACAAATCCTTGTTGGTGGTATAGAGAGTGTGACCCTGGGAGATGAAGAAGCGAGAAAGAGGAAAGTTCAAAAGACAATTCTTGAAAGAAAGGGGCCTCCTACATTTACATGTGCTGTTGAGATTATATCTAAAACAGAATTTCGAGTTCATCACAGATTAGATGCGACCGTGGATGCTATACTAGCTGGGAAATCTCCTCTGTTTGAAGTTCGTCGTATTGATGCGGATGCTGATGACTCTTGCATGTCTACTCAAATATCCGAACCGAACTATCAAAAAGTATCAGATTTTGGTGTTACTAAAGACATTATTGCTAGTGTTTTGGAGTCTGACGAGGAAGATCTAGATCCTTCACCCAATGTGTCTAGAAGATTGAGCAGTGATAAATCTGTGAAGAAGAGAAGTTCACCAGTGTGTATATATACATACAAGATCCTTGAAGCTGACCTACTGCAAGTAGCACAGGTGATGGGGCTTGAGGATGAAATTGAGGTAACTGATGATATTGGAACAGCAGATGCAATTATAGCATCCAGTTTTGAGATGAAGCAAAACCCATGGATTCGTGGTGTAGCAAAATTCCACCAGTTGCCTGTATTTGTCATGAAGTCAAATACCATGGCACAAATCGTGAAGGCAGTTCGTACGATTCTTGAAATGGAATCAGTTGGTTCTTTGCCAAAGCAGCTTGTCAATAATTCCTTTGACATTGAAATTGAAGATGATGCACCCAAAAGAAAACCATCTTTAGAAGAGATCGATGCATTGGAGGAGGTTCGACTTGCAATCGAGTATATAGTGATTCCTGGTGGGGAGCCAGTAGAGCTCCTTCCAAGACGCTCCGAAATAATTGCCAGACAGCTGGAGCTGGTGGAAAGTTATCAGTTGGCTGCTGAAAATTCAGGTACTAAGCGCAACCCGAGGTTGCAGATTCTTCCCATGAGGATAAACAAGAAGAGTTCTTCGAAACCTGTTAAATCCAATTCTATGAAACCGACTAACTCTAAATCACTAACCGGTGGTGGTGGAGGTAGCAGTGTTACTAGGCTCCCCCTTTTATCAGAACAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009536 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AAA

Protein Analysis

693

Amino Acids

75.99

Weight (kDa)

6.01

Isoelectric Point (pI)

52.63

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Spore_III_AA	PF19568	188 - 341	4.8e-13	Sporulation stage III, protein AA
AAA	PF00004	216 - 301	8e-06	ATPase family associated with various cellular activities (AAA)
PTPase	PF25516	475 - 555	3.3e-27	Phosphotyrosine protein phosphatase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008253)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G10420 AT3G10420
fragaria_vesca	FvH4_7g18530 FvH4_7g18530 FvH4_7g18530
malus_domestica	MD01G1101700.v1.1 MD07G1168300.v1.1
prunus_persica	Prupe.2G206900_v2.0.a1
pyrus_communis	pycom01g12830 pycom07g16270
rosa_chinensis	RchiOBHm_Chr1g0362311
rosa_laevigata	RLG00000027652
rosa_multiflora	Rmu_sc0013178.1_g000001 Rmu_sc0037182.1_g000001
rosa_roxburghii	Rroxscaffold_4G00294260
rosa_rugosa	Rorug01G0297300.1 Rorug01G0297400 Rorug01G0297500
rosa_samantha	Rh1AG306200 Rh1BG269700 Rh1CG287200 Rh1DG299900
rosa_wichuraiana	Rw1G027180

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	887
AccI	GTMKAC	1 cut(s)	1259
AccII	CGCG	1 cut(s)	281
AciI	CCGC	5 cut(s)	57, 199, 279, 608, 1235
AclWI	GGATC	3 cut(s)	216, 1352, 1438
AcsI	RAATTY	4 cut(s)	241, 1148, 1589, 1909
AcvI	CACGTG	1 cut(s)	143
AfaI	GTAC	4 cut(s)	338, 931, 1657, 1918
AfiI	CCNNNNNNNGG	7 cut(s)	205, 228, 420, 625, 671, 690, 788
AflIII	ACRYGT	2 cut(s)	140, 1118
AgeI	ACCGGT	1 cut(s)	2027
AjiI	CACGTC	1 cut(s)	264
AjnI	CCWGG	5 cut(s)	273, 401, 664, 1044, 1816
AleI	CACNNNNGTG	1 cut(s)	1423
Alw21I	GWGCWC	3 cut(s)	30, 254, 1839
Alw26I	GTCTC	1 cut(s)	115
AlwI	GGATC	3 cut(s)	216, 1352, 1438
Ama87I	CYCGRG	1 cut(s)	1930
AoxI	GGCC	3 cut(s)	276, 389, 1103
ApeKI	GCWGC	4 cut(s)	556, 835, 1696, 1901
ApoI	RAATTY	4 cut(s)	241, 1148, 1589, 1909
AseI	ATTAAT	1 cut(s)	513
AsiGI	ACCGGT	1 cut(s)	2027
Asp700I	GAANNNNTTC	1 cut(s)	163
AspLEI	GCGC	1 cut(s)	1926
AspS9I	GGNCC	2 cut(s)	659, 1103
AsuC2I	CCSGG	2 cut(s)	223, 581
AsuHPI	GGTGA	4 cut(s)	785, 1356, 1410, 1489
AsuII	TTCGAA	1 cut(s)	1976
AvaI	CYCGRG	1 cut(s)	1930
AvaII	GGWCC	1 cut(s)	659
BanII	GRGCYC	2 cut(s)	254, 1839
BarI	GAAGNNNNNNTAC	4 cut(s)	1443, 1475, 1824, 1856
BbrPI	CACGTG	1 cut(s)	143
Bbv12I	GWGCWC	3 cut(s)	30, 254, 1839
BbvI	GCAGC	4 cut(s)	543, 847, 1708, 1888
BccI	CCATC	4 cut(s)	80, 764, 1474, 1762
BcgI	CGANNNNNNTGC	2 cut(s)	1844, 1878
BciT130I	CCWGG	5 cut(s)	275, 403, 666, 1046, 1818
BciVI	GTATCC	1 cut(s)	739
BclI	TGATCA	1 cut(s)	687
BcnI	CCSGG	2 cut(s)	223, 581
BcoDI	GTCTC	1 cut(s)	115
BfaI	CTAG	7 cut(s)	702, 956, 1193, 1326, 1355, 1377, 2055
BfuI	GTATCC	1 cut(s)	739
BglII	AGATCT	2 cut(s)	454, 1351
BisI	GCNGC	6 cut(s)	199, 279, 557, 836, 1697, 1902
BlsI	GCNGC	6 cut(s)	200, 280, 558, 837, 1698, 1903
BmcAI	AGTACT	1 cut(s)	931
Bme1390I	CCNGG	7 cut(s)	223, 275, 403, 581, 666, 1046, 1818
Bme18I	GGWCC	1 cut(s)	659
BmeT110I	CYCGRG	1 cut(s)	1930
BmgBI	CACGTC	1 cut(s)	264
BmgT120I	GGNCC	2 cut(s)	659, 1103
BmiI	GGNNCC	3 cut(s)	1104, 1827, 2060
BmrFI	CCNGG	7 cut(s)	223, 275, 403, 581, 666, 1046, 1818
BmsI	GCATC	9 cut(s)	801, 1162, 1174, 1222, 1228, 1519, 1550, 1726, 1762
BpmI	CTGGAG	6 cut(s)	23, 77, 311, 323, 687, 1895
Bpu14I	TTCGAA	1 cut(s)	1976
BpuEI	CTTGAG	1 cut(s)	1508
BpuMI	CCSGG	2 cut(s)	223, 581
Bsa29I	ATCGAT	1 cut(s)	1770
BsaAI	YACGTR	1 cut(s)	143
BsaBI	GATNNNNATC	1 cut(s)	1356
BsaJI	CCNNGG	8 cut(s)	273, 474, 1044, 1045, 1179, 1568, 1629, 1931
BsaWI	WCCGGW	1 cut(s)	2027
BsaXI	ACNNNNNCTCC	2 cut(s)	95, 125
Bsc4I	CCNNNNNNNGG	7 cut(s)	205, 228, 420, 625, 671, 690, 788
Bse118I	RCCGGY	3 cut(s)	187, 413, 2027
Bse1I	ACTGG	5 cut(s)	927, 1421, 1545, 1597, 1829
Bse8I	GATNNNNATC	1 cut(s)	1356
BseBI	CCWGG	5 cut(s)	275, 403, 666, 1046, 1818
BseCI	ATCGAT	1 cut(s)	1770
BseDI	CCNNGG	8 cut(s)	273, 474, 1044, 1045, 1179, 1568, 1629, 1931
BseGI	GGATG	6 cut(s)	327, 816, 1189, 1243, 1498, 1541
BseJI	GATNNNNATC	1 cut(s)	1356
BseLI	CCNNNNNNNGG	7 cut(s)	205, 228, 420, 625, 671, 690, 788
BseNI	ACTGG	5 cut(s)	927, 1421, 1545, 1597, 1829
BseRI	GAGGAG	5 cut(s)	169, 362, 960, 1197, 1796
BseXI	GCAGC	4 cut(s)	543, 847, 1708, 1888
BseYI	CCCAGC	1 cut(s)	1196
Bsh1236I	CGCG	1 cut(s)	281
Bsh1285I	CGRYCG	1 cut(s)	1179
BshFI	GGCC	3 cut(s)	278, 391, 1105
BshTI	ACCGGT	1 cut(s)	2027
BshVI	ATCGAT	1 cut(s)	1770
BsiEI	CGRYCG	1 cut(s)	1179
BsiHKAI	GWGCWC	3 cut(s)	30, 254, 1839
BsiHKCI	CYCGRG	1 cut(s)	1930
BsiSI	CCGG	7 cut(s)	188, 222, 314, 414, 460, 580, 2028
BsiWI	CGTACG	1 cut(s)	1655
BslFI	GGGAC	1 cut(s)	916
BslI	CCNNNNNNNGG	7 cut(s)	205, 228, 420, 625, 671, 690, 788
BsmAI	GTCTC	1 cut(s)	115
BsmBI	CGTCTC	1 cut(s)	115
BsmFI	GGGAC	1 cut(s)	916
BsnI	GGCC	3 cut(s)	278, 391, 1105
BsoBI	CYCGRG	1 cut(s)	1930
Bsp119I	TTCGAA	1 cut(s)	1976
Bsp1286I	GDGCHC	3 cut(s)	30, 254, 1839
Bsp1407I	TGTACA	1 cut(s)	336
Bsp143I	GATC	8 cut(s)	34, 208, 454, 687, 1351, 1357, 1443, 1767
Bsp19I	CCATGG	2 cut(s)	1568, 1629
BspACI	CCGC	5 cut(s)	57, 199, 279, 608, 1235
BspANI	GGCC	3 cut(s)	278, 391, 1105
BspDI	ATCGAT	1 cut(s)	1770
BspFNI	CGCG	1 cut(s)	281
BspHI	TCATGA	1 cut(s)	1614
BspLI	GGNNCC	3 cut(s)	1104, 1827, 2060
BspPI	GGATC	3 cut(s)	216, 1352, 1438
BspQI	GCTCTTC	1 cut(s)	320
BspT104I	TTCGAA	1 cut(s)	1976
BsrFI	RCCGGY	3 cut(s)	187, 413, 2027
BsrGI	TGTACA	1 cut(s)	336
BsrI	ACTGG	5 cut(s)	927, 1421, 1545, 1597, 1829
BssAI	RCCGGY	3 cut(s)	187, 413, 2027
BssECI	CCNNGG	8 cut(s)	273, 474, 1044, 1045, 1179, 1568, 1629, 1931
BssMI	GATC	8 cut(s)	34, 208, 454, 687, 1351, 1357, 1443, 1767
BssT1I	CCWWGG	3 cut(s)	474, 1568, 1629
Bst2UI	CCWGG	5 cut(s)	275, 403, 666, 1046, 1818
Bst4CI	ACNGT	2 cut(s)	503, 1180
Bst6I	CTCTTC	5 cut(s)	127, 320, 1403, 1758, 1961
BstAUI	TGTACA	1 cut(s)	336
BstBAI	YACGTR	1 cut(s)	143
BstBI	TTCGAA	1 cut(s)	1976
BstC8I	GCNNGC	5 cut(s)	149, 189, 332, 359, 465
BstDEI	CTNAG	1 cut(s)	1920
BstDSI	CCRYGG	3 cut(s)	1179, 1568, 1629
BstENI	CCTNNNNNAGG	2 cut(s)	688, 786
BstF5I	GGATG	6 cut(s)	327, 816, 1189, 1243, 1498, 1541
BstFNI	CGCG	1 cut(s)	281
BstHHI	GCGC	1 cut(s)	1926
BstKTI	GATC	8 cut(s)	37, 211, 457, 690, 1354, 1360, 1446, 1770
BstMAI	GTCTC	1 cut(s)	115
BstMBI	GATC	8 cut(s)	34, 208, 454, 687, 1351, 1357, 1443, 1767
BstMCI	CGRYCG	1 cut(s)	1179
BstMWI	GCNNNNNNNGC	6 cut(s)	340, 727, 1193, 1538, 1696, 1834
BstNI	CCWGG	5 cut(s)	275, 403, 666, 1046, 1818
BstNSI	RCATGY	3 cut(s)	835, 1122, 1258
BstSCI	CCNGG	7 cut(s)	221, 273, 401, 579, 664, 1044, 1816
BstUI	CGCG	1 cut(s)	281
BstV1I	GCAGC	4 cut(s)	543, 847, 1708, 1888
BstX2I	RGATCY	4 cut(s)	454, 1351, 1357, 1443
BstXI	CCANNNNNNTGG	1 cut(s)	1873
BstYI	RGATCY	4 cut(s)	454, 1351, 1357, 1443
Bsu15I	ATCGAT	1 cut(s)	1770
BsuI	GTATCC	1 cut(s)	739
BsuRI	GGCC	3 cut(s)	278, 391, 1105
BsuTUI	ATCGAT	1 cut(s)	1770
BtgI	CCRYGG	3 cut(s)	1179, 1568, 1629
BtrI	CACGTC	1 cut(s)	264
BtsCI	GGATG	6 cut(s)	327, 816, 1189, 1243, 1498, 1541
BtsI	GCAGTG	2 cut(s)	1396, 2053
BtsIMutI	CAGTG	3 cut(s)	1396, 1428, 2053
Cac8I	GCNNGC	5 cut(s)	149, 189, 332, 359, 465
CciI	TCATGA	1 cut(s)	1614
CfoI	GCGC	1 cut(s)	1926
Cfr10I	RCCGGY	3 cut(s)	187, 413, 2027
Cfr13I	GGNCC	2 cut(s)	659, 1103
ClaI	ATCGAT	1 cut(s)	1770
CseI	GACGC	2 cut(s)	270, 1857
Csp6I	GTAC	4 cut(s)	337, 930, 1656, 1917
CspAI	ACCGGT	1 cut(s)	2027
CviQI	GTAC	4 cut(s)	337, 930, 1656, 1917
DdeI	CTNAG	1 cut(s)	1920
DpnI	GATC	8 cut(s)	36, 210, 456, 689, 1353, 1359, 1445, 1769
DpnII	GATC	8 cut(s)	34, 208, 454, 687, 1351, 1357, 1443, 1767
Eam1104I	CTCTTC	5 cut(s)	127, 320, 1403, 1758, 1961
EarI	CTCTTC	5 cut(s)	127, 320, 1403, 1758, 1961
EciI	GGCGGA	1 cut(s)	46
Ecl136II	GAGCTC	2 cut(s)	252, 1837
Eco130I	CCWWGG	3 cut(s)	474, 1568, 1629
Eco147I	AGGCCT	1 cut(s)	391
Eco24I	GRGCYC	2 cut(s)	254, 1839
Eco47I	GGWCC	1 cut(s)	659
Eco53kI	GAGCTC	2 cut(s)	252, 1837
Eco72I	CACGTG	1 cut(s)	143
Eco88I	CYCGRG	1 cut(s)	1930
EcoICRI	GAGCTC	2 cut(s)	252, 1837
EcoNI	CCTNNNNNAGG	2 cut(s)	688, 786
EcoO109I	RGGNCCY	2 cut(s)	659, 1103
EcoRI	GAATTC	1 cut(s)	241
EcoRII	CCWGG	5 cut(s)	273, 401, 664, 1044, 1816
EcoT14I	CCWWGG	3 cut(s)	474, 1568, 1629
EcoT22I	ATGCAT	1 cut(s)	1777
EcoT38I	GRGCYC	2 cut(s)	254, 1839
ErhI	CCWWGG	3 cut(s)	474, 1568, 1629
Esp3I	CGTCTC	1 cut(s)	115
FalI	AAGNNNNNCTT	2 cut(s)	668, 700
FaqI	GGGAC	1 cut(s)	916
FauNDI	CATATG	2 cut(s)	723, 870
FbaI	TGATCA	1 cut(s)	687
FblI	GTMKAC	1 cut(s)	1259
Fnu4HI	GCNGC	6 cut(s)	199, 279, 557, 836, 1697, 1902
FokI	GGATG	6 cut(s)	334, 823, 1196, 1250, 1505, 1528
FriOI	GRGCYC	2 cut(s)	254, 1839
Fsp4HI	GCNGC	6 cut(s)	199, 279, 557, 836, 1697, 1902
FspBI	CTAG	7 cut(s)	702, 956, 1193, 1326, 1355, 1377, 2055
GlaI	GCGC	1 cut(s)	1925
GluI	GCNGC	6 cut(s)	199, 279, 557, 836, 1697, 1902
GsaI	CCCAGC	1 cut(s)	1200
GsuI	CTGGAG	6 cut(s)	23, 77, 311, 323, 687, 1895
HaeIII	GGCC	3 cut(s)	278, 391, 1105
HapII	CCGG	7 cut(s)	188, 222, 314, 414, 460, 580, 2028
HgaI	GACGC	2 cut(s)	270, 1857
HhaI	GCGC	1 cut(s)	1926
Hin6I	GCGC	1 cut(s)	1924
HinP1I	GCGC	1 cut(s)	1924
HinfI	GANTC	9 cut(s)	193, 1000, 1247, 1337, 1573, 1660, 1673, 1813, 1942
HpaII	CCGG	7 cut(s)	188, 222, 314, 414, 460, 580, 2028
HphI	GGTGA	4 cut(s)	785, 1356, 1410, 1489
Hpy166II	GTNNAC	3 cut(s)	829, 1260, 1418
Hpy8I	GTNNAC	3 cut(s)	829, 1260, 1418
Hpy99I	CGWCG	8 cut(s)	138, 187, 208, 238, 241, 268, 286, 1227
HpyAV	CCTTC	4 cut(s)	1014, 1371, 1639, 1850
HpyCH4III	ACNGT	2 cut(s)	503, 1180
HpyCH4IV	ACGT	2 cut(s)	142, 263
HpyF10VI	GCNNNNNNNGC	6 cut(s)	340, 727, 1193, 1538, 1696, 1834
HpyF3I	CTNAG	1 cut(s)	1920
HpySE526I	ACGT	2 cut(s)	142, 263
HspAI	GCGC	1 cut(s)	1924
KroI	GCCGGC	1 cut(s)	187
KroNI	GCCGGC	1 cut(s)	189
Ksp22I	TGATCA	1 cut(s)	687
Kzo9I	GATC	8 cut(s)	34, 208, 454, 687, 1351, 1357, 1443, 1767
LguI	GCTCTTC	1 cut(s)	320
LmnI	GCTCC	9 cut(s)	33, 249, 286, 292, 1825, 1842, 1856, 1876, 2064
Lsp1109I	GCAGC	4 cut(s)	543, 847, 1708, 1888
LweI	GCATC	9 cut(s)	801, 1162, 1174, 1222, 1228, 1519, 1550, 1726, 1762
MaeI	CTAG	7 cut(s)	702, 956, 1193, 1326, 1355, 1377, 2055
MaeII	ACGT	2 cut(s)	142, 263
MaeIII	GTNAC	5 cut(s)	620, 1039, 1306, 1504, 2050
MalI	GATC	8 cut(s)	36, 210, 456, 689, 1353, 1359, 1445, 1769
MboI	GATC	8 cut(s)	34, 208, 454, 687, 1351, 1357, 1443, 1767
MflI	RGATCY	4 cut(s)	454, 1351, 1357, 1443
MhlI	GDGCHC	3 cut(s)	30, 254, 1839
MlyI	GAGTC	2 cut(s)	1241, 1346
MmeI	TCCRAC	4 cut(s)	126, 186, 264, 940
Mph1103I	ATGCAT	1 cut(s)	1777
MreI	CGCCGGCG	1 cut(s)	187
MroNI	GCCGGC	1 cut(s)	187
MroXI	GAANNNNTTC	1 cut(s)	163
MseI	TTAA	2 cut(s)	513, 1986
MslI	CAYNNNNRTG	2 cut(s)	1117, 1423
MspA1I	CMGCKG	1 cut(s)	1873
MspI	CCGG	7 cut(s)	188, 222, 314, 414, 460, 580, 2028
MspR9I	CCNGG	7 cut(s)	223, 275, 403, 581, 666, 1046, 1818
MvaI	CCWGG	5 cut(s)	275, 403, 666, 1046, 1818
MvnI	CGCG	1 cut(s)	281
MwoI	GCNNNNNNNGC	6 cut(s)	340, 727, 1193, 1538, 1696, 1834
NaeI	GCCGGC	1 cut(s)	189
NciI	CCSGG	2 cut(s)	223, 581
NcoI	CCATGG	2 cut(s)	1568, 1629
NdeI	CATATG	2 cut(s)	723, 870
NdeII	GATC	8 cut(s)	34, 208, 454, 687, 1351, 1357, 1443, 1767
NgoMIV	GCCGGC	1 cut(s)	187
NlaIV	GGNNCC	3 cut(s)	1104, 1827, 2060
NmeAIII	GCCGAG	1 cut(s)	233
NmuCI	GTSAC	2 cut(s)	620, 1039
NsiI	ATGCAT	1 cut(s)	1777
NspI	RCATGY	3 cut(s)	835, 1122, 1258
NspV	TTCGAA	1 cut(s)	1976
OliI	CACNNNNGTG	1 cut(s)	1423
PagI	TCATGA	1 cut(s)	1614
PasI	CCCWGGG	1 cut(s)	1045
PceI	AGGCCT	1 cut(s)	391
PciI	ACATGT	1 cut(s)	1118
PciSI	GCTCTTC	1 cut(s)	320
PcsI	WCGNNNNNNNCGW	3 cut(s)	139, 188, 260
PdiI	GCCGGC	1 cut(s)	189
PdmI	GAANNNNTTC	1 cut(s)	163
PfeI	GAWTC	7 cut(s)	193, 1000, 1573, 1660, 1673, 1813, 1942
Pfl23II	CGTACG	1 cut(s)	1655
PfoI	TCCNGGA	2 cut(s)	221, 664
PinAI	ACCGGT	1 cut(s)	2027
PkrI	GCNGC	6 cut(s)	200, 280, 558, 837, 1698, 1903
PleI	GAGTC	2 cut(s)	1241, 1345
PmaCI	CACGTG	1 cut(s)	143
PmlI	CACGTG	1 cut(s)	143
PpsI	GAGTC	2 cut(s)	1241, 1345
Ppu21I	YACGTR	1 cut(s)	143
PpuMI	RGGWCCY	1 cut(s)	659
PscI	ACATGT	1 cut(s)	1118
PshBI	ATTAAT	1 cut(s)	513
PsiI	TTATAA	1 cut(s)	887
Psp124BI	GAGCTC	2 cut(s)	254, 1839
Psp5II	RGGWCCY	1 cut(s)	659
Psp6I	CCWGG	5 cut(s)	273, 401, 664, 1044, 1816
PspCI	CACGTG	1 cut(s)	143
PspFI	CCCAGC	1 cut(s)	1196
PspGI	CCWGG	5 cut(s)	273, 401, 664, 1044, 1816
PspLI	CGTACG	1 cut(s)	1655
PspN4I	GGNNCC	3 cut(s)	1104, 1827, 2060
PspPI	GGNCC	2 cut(s)	659, 1103
PspPPI	RGGWCCY	1 cut(s)	659
PsuI	RGATCY	4 cut(s)	454, 1351, 1357, 1443
PvuII	CAGCTG	1 cut(s)	1873
RsaI	GTAC	4 cut(s)	338, 931, 1657, 1918
RsaNI	GTAC	4 cut(s)	337, 930, 1656, 1917
RseI	CAYNNNNRTG	2 cut(s)	1117, 1423
SacI	GAGCTC	2 cut(s)	254, 1839
SapI	GCTCTTC	1 cut(s)	320
SaqAI	TTAA	2 cut(s)	513, 1986
SatI	GCNGC	6 cut(s)	199, 279, 557, 836, 1697, 1902
Sau3AI	GATC	8 cut(s)	34, 208, 454, 687, 1351, 1357, 1443, 1767
Sau96I	GGNCC	2 cut(s)	659, 1103
ScaI	AGTACT	1 cut(s)	931
SchI	GAGTC	2 cut(s)	1241, 1346
ScrFI	CCNGG	7 cut(s)	223, 275, 403, 581, 666, 1046, 1818
SduI	GDGCHC	3 cut(s)	30, 254, 1839
SfaNI	GCATC	9 cut(s)	801, 1162, 1174, 1222, 1228, 1519, 1550, 1726, 1762
SfuI	TTCGAA	1 cut(s)	1976
SgrAI	CRCCGGYG	1 cut(s)	187
SinI	GGWCC	1 cut(s)	659
SmiMI	CAYNNNNRTG	2 cut(s)	1117, 1423
SmlI	CTYRAG	1 cut(s)	1487
SmoI	CTYRAG	1 cut(s)	1487
SseBI	AGGCCT	1 cut(s)	391
SsiI	CCGC	5 cut(s)	57, 199, 279, 608, 1235
SspMI	CTAG	7 cut(s)	702, 956, 1193, 1326, 1355, 1377, 2055
SstI	GAGCTC	2 cut(s)	254, 1839
StuI	AGGCCT	1 cut(s)	391
StyD4I	CCNGG	7 cut(s)	221, 273, 401, 579, 664, 1044, 1816
StyI	CCWWGG	3 cut(s)	474, 1568, 1629
TaaI	ACNGT	2 cut(s)	503, 1180
TaiI	ACGT	2 cut(s)	145, 266
TaqI	TCGA	8 cut(s)	136, 239, 752, 1153, 1770, 1789, 1800, 1976
TatI	WGTACW	2 cut(s)	336, 929
TauI	GCSGC	2 cut(s)	201, 281
TfiI	GAWTC	7 cut(s)	193, 1000, 1573, 1660, 1673, 1813, 1942
Tru1I	TTAA	2 cut(s)	513, 1986
Tru9I	TTAA	2 cut(s)	513, 1986
TscAI	CASTG	3 cut(s)	1396, 1428, 2053
TseFI	GTSAC	2 cut(s)	620, 1039
TseI	GCWGC	4 cut(s)	556, 835, 1696, 1901
Tsp45I	GTSAC	2 cut(s)	620, 1039
TspDTI	ATGAA	9 cut(s)	338, 740, 909, 1068, 1148, 1509, 1571, 1631, 2015
TspGWI	ACGGA	1 cut(s)	608
TspRI	CASTG	3 cut(s)	1396, 1428, 2053
VpaK11BI	GGWCC	1 cut(s)	659
VspI	ATTAAT	1 cut(s)	513
XagI	CCTNNNNNAGG	2 cut(s)	688, 786
XapI	RAATTY	4 cut(s)	241, 1148, 1589, 1909
XbaI	TCTAGA	2 cut(s)	1354, 1376
XceI	RCATGY	3 cut(s)	835, 1122, 1258
XmiI	GTMKAC	1 cut(s)	1259
XmnI	GAANNNNTTC	1 cut(s)	163
XspI	CTAG	7 cut(s)	702, 956, 1193, 1326, 1355, 1377, 2055
ZrmI	AGTACT	1 cut(s)	931
Zsp2I	ATGCAT	1 cut(s)	1777

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.