Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr1

Orthogroup ID

OG0008253

Physical Location & Seq

Genomic Coordinates Reverse (-)

54557887 .. 54561682

Gene Structure 3796 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw1G027180.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2085 bp

ATGACAGCTCTGACCTCCCAATTCGTGCTCCTTGATCTCCAGAACTCATGGCACTCCGCCACCCAATTCCCCATCTCCACCCTCTGTTTTCTCCAGACCTCCAACTTCGTCTCCACACTCTCTTCCTCATTTCGTCGAACACGTGGCGTGCATAAGGGAATTGCTTCTTCCTCCAAACACTCCTCCTCGCCGGCGATTCGCCGCCCGTCGGATCGGTTCTTCTCCGGGAATGGGTCGTCGTCGAATTCGGGGAGCTCGGCTTCCACGTCGCAGACCCAGGCCGCGTCGGAGCTGGAGCTGTTTCTGGAGTTGTTGCCGGAGAGGATGAAGAGCGAGCTGTACAGGCATGAGGATATCGGCAGGCTCATTGAGGTCGTCATGGATTTGGGCAGGCCTCCGATTGCCAGGTTTCCCACCGGCGATTGGGTCATCTCGGAATATCCCGTCAGCCAAGAAGATCTCCGGCTCGCTGTATCCAAGGTTAGTGAGTTTTCAGATGACAACCGTTCTGGTATTAATAACTCATTACACCGGATAAGTGCTATCCGAAACCGAAAGCTGCAAATCATTGGACTTACTTGCCGGGTGGGGAGAGCTGTGTCAGGAAGTGCGGAGATTATCCGTGACTTGGTTGAGGGTGGTGGTTCAATCTTGGTCATAGGACCTCCTGGAGTTGGCAAGACAACCTTGATCAGAGAAATTGCTAGAATGTTGGCGGATGAGCATATGAAGCGTGTTGTCATTGTGGATACATCGAATGAGATTGGGGGAGATGGAGATGTACCTCATGCGGGAATAGGGCGTGCAAGGAGGATGCAAGTTCCTAATGTGAACATGCAGCATAATGTTATGATTGAAGCAGTTGAAAATCATATGCCTCAAACCATTATAATAGATGAAATTGGGACAGAGCTTGAAGCATTGGCTTCCAGTACTATTGCTCAAAGAGGAGTTCAGCTAGTTGGAACAGCACATGGAATGACGATAGACAACATAATAAAGAATCCTTCTTTACAAATCCTTGTTGGTGGCATAGAGAGTGTGACCCTGGGAGATGAAGAAGCAAGAAAGAGAAAAGTTCAAAAGACAATTCTTGAAAGAAAGGGGCCTCCTACATTTACATGTGCTGTTGAGATTATATCTAAAACAGAGTTCCGTGTTCATCACAGATTAGATGCAACCGTGGATGCTATACTAGCTGGAAAATCTCCTCTGTTTGAAGTTCGTCGTACTGATGCGGATGCTGATGACTCTTGCATGTCTACTCAAATATCTGAACTGAACTATCAAAAAGTATCGGATTTTGGTGTTACTAAAGACATTATTGCTAGTGTTTTGGAGTCTGACGAGGAAGATCTAGATCCTTCACCCAATGTGTCTAGAAGATTGAGCAGTGATAAATCTGTGAAGAAGAGAAGTTCACCAGTGTGTATATATACATACAAGATCCTTGAAGCTGACCTACTGCAAGTAGCACAGGTGATGGGGCTTGAGGATGAAATTGAGGTAACTGATGATATTGGAACAGCCGATGCAATTATAGCATCCAGTTCTGAGATGAAGCAAAACCCATGGATTCGTGGTGTAGCAAAATTCCACCAGTTGCCTGTATTTGTCATGAAGTCAAATACCATGGCACAAATCGTGAAGGCAGTTCGTACGATTCTTGAAATGGAATCAGTTGGTTCTTTGCCAAAGCAGCTTGTCAATAATTCCTTTGACATTGAAATTGAAGATGATGCACCCAAAAGAAAACCATCTTTAGAAGAGATCGATGCATTGGAGGAGGTTCGACTTGCAATCGAGTATATAGTGATTCCTGGTGGAGAGCCCGTAGAGCTCCTTCCAAGACGCTCCGAAATAATTGCCAGACAGCTGGAGCTGGTGGAAAGTTATCAGTTGGCTGCTGAAAATTCAGGTACTAAGCGCAATCCGAGGTTGCAGATTCTTCCCATGAGGATAAACAAGAAGAGTTCTTCGAAACCTGTTAAATCCAGTTCTATGAAACCGACTAACTCTAAATCACTAACCGGTGGTGGTGGAGGTAGCAGTGTTACTAGGCTCCCCCTTTTATCAGAACAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009536 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AAA

Protein Analysis

694

Amino Acids

76.01

Weight (kDa)

6.01

Isoelectric Point (pI)

54.17

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Spore_III_AA	PF19568	189 - 342	4.7e-13	Sporulation stage III, protein AA
AAA	PF00004	217 - 302	8e-06	ATPase family associated with various cellular activities (AAA)
PTPase	PF25516	476 - 556	3.6e-28	Phosphotyrosine protein phosphatase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008253)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G10420 AT3G10420
fragaria_vesca	FvH4_7g18530 FvH4_7g18530 FvH4_7g18530
malus_domestica	MD01G1101700.v1.1 MD07G1168300.v1.1
prunus_persica	Prupe.2G206900_v2.0.a1
pyrus_communis	pycom01g12830 pycom07g16270
rosa_chinensis	RchiOBHm_Chr1g0362311
rosa_laevigata	RLG00000027652
rosa_multiflora	Rmu_sc0013178.1_g000001 Rmu_sc0037182.1_g000001
rosa_roxburghii	Rroxscaffold_4G00294260
rosa_rugosa	Rorug01G0297300.1 Rorug01G0297400 Rorug01G0297500
rosa_samantha	Rh1AG306200 Rh1BG269700 Rh1CG287200 Rh1DG299900
rosa_wichuraiana	Rw1G027180

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	890
AccI	GTMKAC	1 cut(s)	1262
AccII	CGCG	1 cut(s)	284
AciI	CCGC	7 cut(s)	57, 202, 282, 611, 716, 791, 1238
AclWI	GGATC	3 cut(s)	219, 1355, 1441
AcsI	RAATTY	3 cut(s)	244, 1592, 1912
AcvI	CACGTG	1 cut(s)	143
AfaI	GTAC	6 cut(s)	341, 783, 934, 1231, 1660, 1921
AfiI	CCNNNNNNNGG	6 cut(s)	208, 231, 423, 628, 674, 791
AflIII	ACRYGT	2 cut(s)	140, 1121
AgeI	ACCGGT	1 cut(s)	2030
AjiI	CACGTC	1 cut(s)	267
AjnI	CCWGG	5 cut(s)	276, 404, 667, 1047, 1819
AleI	CACNNNNGTG	1 cut(s)	1426
Alw21I	GWGCWC	3 cut(s)	30, 257, 1842
Alw26I	GTCTC	1 cut(s)	115
AlwI	GGATC	3 cut(s)	219, 1355, 1441
AoxI	GGCC	3 cut(s)	279, 392, 1106
ApeKI	GCWGC	4 cut(s)	559, 838, 1699, 1904
ApoI	RAATTY	3 cut(s)	244, 1592, 1912
AseI	ATTAAT	1 cut(s)	516
AsiGI	ACCGGT	1 cut(s)	2030
Asp700I	GAANNNNTTC	1 cut(s)	163
AspLEI	GCGC	1 cut(s)	1929
AspS9I	GGNCC	2 cut(s)	662, 1106
AsuC2I	CCSGG	2 cut(s)	226, 584
AsuHPI	GGTGA	3 cut(s)	1359, 1413, 1492
AsuII	TTCGAA	1 cut(s)	1979
AvaII	GGWCC	1 cut(s)	662
BanII	GRGCYC	3 cut(s)	257, 1833, 1842
BarI	GAAGNNNNNNTAC	4 cut(s)	1446, 1478, 1827, 1859
BbrPI	CACGTG	1 cut(s)	143
Bbv12I	GWGCWC	3 cut(s)	30, 257, 1842
BbvI	GCAGC	4 cut(s)	546, 850, 1711, 1891
BccI	CCATC	4 cut(s)	80, 767, 1477, 1765
BcgI	CGANNNNNNTGC	2 cut(s)	1847, 1881
BciT130I	CCWGG	5 cut(s)	278, 406, 669, 1049, 1821
BciVI	GTATCC	2 cut(s)	484, 742
BclI	TGATCA	1 cut(s)	690
BcnI	CCSGG	2 cut(s)	226, 584
BcoDI	GTCTC	1 cut(s)	115
BfaI	CTAG	7 cut(s)	705, 959, 1196, 1329, 1358, 1380, 2058
BfuI	GTATCC	2 cut(s)	484, 742
BglII	AGATCT	2 cut(s)	457, 1354
BisI	GCNGC	6 cut(s)	202, 282, 560, 839, 1700, 1905
BlsI	GCNGC	6 cut(s)	203, 283, 561, 840, 1701, 1906
BmcAI	AGTACT	1 cut(s)	934
Bme1390I	CCNGG	7 cut(s)	226, 278, 406, 584, 669, 1049, 1821
Bme18I	GGWCC	1 cut(s)	662
BmgBI	CACGTC	1 cut(s)	267
BmgT120I	GGNCC	2 cut(s)	662, 1106
BmiI	GGNNCC	2 cut(s)	1107, 2063
BmrFI	CCNGG	7 cut(s)	226, 278, 406, 584, 669, 1049, 1821
BmsI	GCATC	9 cut(s)	804, 1165, 1177, 1225, 1231, 1522, 1553, 1729, 1765
BpmI	CTGGAG	6 cut(s)	23, 77, 314, 326, 690, 1898
Bpu14I	TTCGAA	1 cut(s)	1979
BpuEI	CTTGAG	1 cut(s)	1511
BpuMI	CCSGG	2 cut(s)	226, 584
Bsa29I	ATCGAT	1 cut(s)	1773
BsaAI	YACGTR	1 cut(s)	143
BsaBI	GATNNNNATC	1 cut(s)	1359
BsaJI	CCNNGG	8 cut(s)	276, 477, 1047, 1048, 1182, 1571, 1632, 1934
BsaWI	WCCGGW	2 cut(s)	531, 2030
BsaXI	ACNNNNNCTCC	4 cut(s)	95, 125, 1818, 1848
Bsc4I	CCNNNNNNNGG	6 cut(s)	208, 231, 423, 628, 674, 791
Bse118I	RCCGGY	3 cut(s)	190, 416, 2030
Bse1I	ACTGG	5 cut(s)	930, 1424, 1548, 1600, 1995
Bse8I	GATNNNNATC	1 cut(s)	1359
BseBI	CCWGG	5 cut(s)	278, 406, 669, 1049, 1821
BseCI	ATCGAT	1 cut(s)	1773
BseDI	CCNNGG	8 cut(s)	276, 477, 1047, 1048, 1182, 1571, 1632, 1934
BseGI	GGATG	7 cut(s)	330, 724, 819, 1192, 1246, 1501, 1544
BseJI	GATNNNNATC	1 cut(s)	1359
BseLI	CCNNNNNNNGG	6 cut(s)	208, 231, 423, 628, 674, 791
BseMII	CTCAG	1 cut(s)	1545
BseNI	ACTGG	5 cut(s)	930, 1424, 1548, 1600, 1995
BseRI	GAGGAG	5 cut(s)	172, 175, 963, 1200, 1799
BseXI	GCAGC	4 cut(s)	546, 850, 1711, 1891
Bsh1236I	CGCG	1 cut(s)	284
BshFI	GGCC	3 cut(s)	281, 394, 1108
BshTI	ACCGGT	1 cut(s)	2030
BshVI	ATCGAT	1 cut(s)	1773
BsiHKAI	GWGCWC	3 cut(s)	30, 257, 1842
BsiSI	CCGG	8 cut(s)	191, 225, 317, 417, 463, 532, 583, 2031
BsiWI	CGTACG	1 cut(s)	1658
BslFI	GGGAC	1 cut(s)	919
BslI	CCNNNNNNNGG	6 cut(s)	208, 231, 423, 628, 674, 791
BsmAI	GTCTC	1 cut(s)	115
BsmBI	CGTCTC	1 cut(s)	115
BsmFI	GGGAC	1 cut(s)	919
BsnI	GGCC	3 cut(s)	281, 394, 1108
Bsp119I	TTCGAA	1 cut(s)	1979
Bsp1286I	GDGCHC	4 cut(s)	30, 257, 1833, 1842
Bsp1407I	TGTACA	1 cut(s)	339
Bsp143I	GATC	8 cut(s)	34, 211, 457, 690, 1354, 1360, 1446, 1770
Bsp19I	CCATGG	2 cut(s)	1571, 1632
BspACI	CCGC	7 cut(s)	57, 202, 282, 611, 716, 791, 1238
BspANI	GGCC	3 cut(s)	281, 394, 1108
BspCNI	CTCAG	1 cut(s)	1546
BspDI	ATCGAT	1 cut(s)	1773
BspFNI	CGCG	1 cut(s)	284
BspHI	TCATGA	1 cut(s)	1617
BspLI	GGNNCC	2 cut(s)	1107, 2063
BspPI	GGATC	3 cut(s)	219, 1355, 1441
BspQI	GCTCTTC	1 cut(s)	323
BspT104I	TTCGAA	1 cut(s)	1979
BsrFI	RCCGGY	3 cut(s)	190, 416, 2030
BsrGI	TGTACA	1 cut(s)	339
BsrI	ACTGG	5 cut(s)	930, 1424, 1548, 1600, 1995
BssAI	RCCGGY	3 cut(s)	190, 416, 2030
BssECI	CCNNGG	8 cut(s)	276, 477, 1047, 1048, 1182, 1571, 1632, 1934
BssMI	GATC	8 cut(s)	34, 211, 457, 690, 1354, 1360, 1446, 1770
BssT1I	CCWWGG	3 cut(s)	477, 1571, 1632
Bst2UI	CCWGG	5 cut(s)	278, 406, 669, 1049, 1821
Bst4CI	ACNGT	2 cut(s)	506, 1183
Bst6I	CTCTTC	5 cut(s)	127, 323, 1406, 1761, 1964
BstAUI	TGTACA	1 cut(s)	339
BstBAI	YACGTR	1 cut(s)	143
BstBI	TTCGAA	1 cut(s)	1979
BstC8I	GCNNGC	7 cut(s)	149, 192, 335, 362, 392, 468, 804
BstDEI	CTNAG	2 cut(s)	1554, 1923
BstDSI	CCRYGG	3 cut(s)	1182, 1571, 1632
BstF5I	GGATG	7 cut(s)	330, 724, 819, 1192, 1246, 1501, 1544
BstFNI	CGCG	1 cut(s)	284
BstHHI	GCGC	1 cut(s)	1929
BstKTI	GATC	8 cut(s)	37, 214, 460, 693, 1357, 1363, 1449, 1773
BstMAI	GTCTC	1 cut(s)	115
BstMBI	GATC	8 cut(s)	34, 211, 457, 690, 1354, 1360, 1446, 1770
BstMWI	GCNNNNNNNGC	6 cut(s)	343, 730, 1196, 1541, 1699, 1837
BstNI	CCWGG	5 cut(s)	278, 406, 669, 1049, 1821
BstNSI	RCATGY	3 cut(s)	838, 1125, 1261
BstSCI	CCNGG	7 cut(s)	224, 276, 404, 582, 667, 1047, 1819
BstUI	CGCG	1 cut(s)	284
BstV1I	GCAGC	4 cut(s)	546, 850, 1711, 1891
BstX2I	RGATCY	4 cut(s)	457, 1354, 1360, 1446
BstXI	CCANNNNNNTGG	1 cut(s)	1876
BstYI	RGATCY	4 cut(s)	457, 1354, 1360, 1446
Bsu15I	ATCGAT	1 cut(s)	1773
BsuI	GTATCC	2 cut(s)	484, 742
BsuRI	GGCC	3 cut(s)	281, 394, 1108
BsuTUI	ATCGAT	1 cut(s)	1773
BtgI	CCRYGG	3 cut(s)	1182, 1571, 1632
BtrI	CACGTC	1 cut(s)	267
BtsCI	GGATG	7 cut(s)	330, 724, 819, 1192, 1246, 1501, 1544
BtsI	GCAGTG	2 cut(s)	1399, 2056
BtsIMutI	CAGTG	3 cut(s)	1399, 1431, 2056
Cac8I	GCNNGC	7 cut(s)	149, 192, 335, 362, 392, 468, 804
CciI	TCATGA	1 cut(s)	1617
CfoI	GCGC	1 cut(s)	1929
Cfr10I	RCCGGY	3 cut(s)	190, 416, 2030
Cfr13I	GGNCC	2 cut(s)	662, 1106
ClaI	ATCGAT	1 cut(s)	1773
CseI	GACGC	2 cut(s)	273, 1860
Csp6I	GTAC	6 cut(s)	340, 782, 933, 1230, 1659, 1920
CspAI	ACCGGT	1 cut(s)	2030
CviQI	GTAC	6 cut(s)	340, 782, 933, 1230, 1659, 1920
DdeI	CTNAG	2 cut(s)	1554, 1923
DpnI	GATC	8 cut(s)	36, 213, 459, 692, 1356, 1362, 1448, 1772
DpnII	GATC	8 cut(s)	34, 211, 457, 690, 1354, 1360, 1446, 1770
Eam1104I	CTCTTC	5 cut(s)	127, 323, 1406, 1761, 1964
EarI	CTCTTC	5 cut(s)	127, 323, 1406, 1761, 1964
EciI	GGCGGA	2 cut(s)	46, 731
Ecl136II	GAGCTC	2 cut(s)	255, 1840
Eco130I	CCWWGG	3 cut(s)	477, 1571, 1632
Eco147I	AGGCCT	1 cut(s)	394
Eco24I	GRGCYC	3 cut(s)	257, 1833, 1842
Eco32I	GATATC	1 cut(s)	355
Eco47I	GGWCC	1 cut(s)	662
Eco53kI	GAGCTC	2 cut(s)	255, 1840
Eco72I	CACGTG	1 cut(s)	143
EcoICRI	GAGCTC	2 cut(s)	255, 1840
EcoO109I	RGGNCCY	2 cut(s)	662, 1106
EcoRI	GAATTC	1 cut(s)	244
EcoRII	CCWGG	5 cut(s)	276, 404, 667, 1047, 1819
EcoRV	GATATC	1 cut(s)	355
EcoT14I	CCWWGG	3 cut(s)	477, 1571, 1632
EcoT22I	ATGCAT	1 cut(s)	1780
EcoT38I	GRGCYC	3 cut(s)	257, 1833, 1842
ErhI	CCWWGG	3 cut(s)	477, 1571, 1632
Esp3I	CGTCTC	1 cut(s)	115
FalI	AAGNNNNNCTT	2 cut(s)	671, 703
FaqI	GGGAC	1 cut(s)	919
FauI	CCCGC	1 cut(s)	784
FauNDI	CATATG	2 cut(s)	726, 873
FbaI	TGATCA	1 cut(s)	690
FblI	GTMKAC	1 cut(s)	1262
Fnu4HI	GCNGC	6 cut(s)	202, 282, 560, 839, 1700, 1905
FokI	GGATG	7 cut(s)	337, 731, 826, 1199, 1253, 1508, 1531
FriOI	GRGCYC	3 cut(s)	257, 1833, 1842
Fsp4HI	GCNGC	6 cut(s)	202, 282, 560, 839, 1700, 1905
FspBI	CTAG	7 cut(s)	705, 959, 1196, 1329, 1358, 1380, 2058
GlaI	GCGC	1 cut(s)	1928
GluI	GCNGC	6 cut(s)	202, 282, 560, 839, 1700, 1905
GsuI	CTGGAG	6 cut(s)	23, 77, 314, 326, 690, 1898
HaeIII	GGCC	3 cut(s)	281, 394, 1108
HapII	CCGG	8 cut(s)	191, 225, 317, 417, 463, 532, 583, 2031
HgaI	GACGC	2 cut(s)	273, 1860
HhaI	GCGC	1 cut(s)	1929
Hin6I	GCGC	1 cut(s)	1927
HinP1I	GCGC	1 cut(s)	1927
HinfI	GANTC	9 cut(s)	196, 1003, 1250, 1340, 1576, 1663, 1676, 1816, 1945
HpaII	CCGG	8 cut(s)	191, 225, 317, 417, 463, 532, 583, 2031
HphI	GGTGA	3 cut(s)	1359, 1413, 1492
Hpy166II	GTNNAC	3 cut(s)	832, 1263, 1421
Hpy8I	GTNNAC	3 cut(s)	832, 1263, 1421
Hpy99I	CGWCG	7 cut(s)	138, 211, 241, 244, 271, 289, 1230
HpyAV	CCTTC	4 cut(s)	1017, 1374, 1642, 1853
HpyCH4III	ACNGT	2 cut(s)	506, 1183
HpyCH4IV	ACGT	2 cut(s)	142, 266
HpyF10VI	GCNNNNNNNGC	6 cut(s)	343, 730, 1196, 1541, 1699, 1837
HpyF3I	CTNAG	2 cut(s)	1554, 1923
HpySE526I	ACGT	2 cut(s)	142, 266
HspAI	GCGC	1 cut(s)	1927
KroI	GCCGGC	1 cut(s)	190
KroNI	GCCGGC	1 cut(s)	192
Ksp22I	TGATCA	1 cut(s)	690
Kzo9I	GATC	8 cut(s)	34, 211, 457, 690, 1354, 1360, 1446, 1770
LguI	GCTCTTC	1 cut(s)	323
LmnI	GCTCC	8 cut(s)	33, 252, 289, 295, 1845, 1859, 1879, 2067
Lsp1109I	GCAGC	4 cut(s)	546, 850, 1711, 1891
LweI	GCATC	9 cut(s)	804, 1165, 1177, 1225, 1231, 1522, 1553, 1729, 1765
MaeI	CTAG	7 cut(s)	705, 959, 1196, 1329, 1358, 1380, 2058
MaeII	ACGT	2 cut(s)	142, 266
MaeIII	GTNAC	5 cut(s)	623, 1042, 1309, 1507, 2053
MalI	GATC	8 cut(s)	36, 213, 459, 692, 1356, 1362, 1448, 1772
MboI	GATC	8 cut(s)	34, 211, 457, 690, 1354, 1360, 1446, 1770
MflI	RGATCY	4 cut(s)	457, 1354, 1360, 1446
MhlI	GDGCHC	4 cut(s)	30, 257, 1833, 1842
MlyI	GAGTC	2 cut(s)	1244, 1349
MmeI	TCCRAC	4 cut(s)	126, 189, 267, 943
Mph1103I	ATGCAT	1 cut(s)	1780
MreI	CGCCGGCG	1 cut(s)	190
MroNI	GCCGGC	1 cut(s)	190
MroXI	GAANNNNTTC	1 cut(s)	163
MseI	TTAA	2 cut(s)	516, 1989
MslI	CAYNNNNRTG	2 cut(s)	1120, 1426
MspA1I	CMGCKG	1 cut(s)	1876
MspI	CCGG	8 cut(s)	191, 225, 317, 417, 463, 532, 583, 2031
MspR9I	CCNGG	7 cut(s)	226, 278, 406, 584, 669, 1049, 1821
MvaI	CCWGG	5 cut(s)	278, 406, 669, 1049, 1821
MvnI	CGCG	1 cut(s)	284
MwoI	GCNNNNNNNGC	6 cut(s)	343, 730, 1196, 1541, 1699, 1837
NaeI	GCCGGC	1 cut(s)	192
NciI	CCSGG	2 cut(s)	226, 584
NcoI	CCATGG	2 cut(s)	1571, 1632
NdeI	CATATG	2 cut(s)	726, 873
NdeII	GATC	8 cut(s)	34, 211, 457, 690, 1354, 1360, 1446, 1770
NgoMIV	GCCGGC	1 cut(s)	190
NlaIV	GGNNCC	2 cut(s)	1107, 2063
NmeAIII	GCCGAG	1 cut(s)	236
NmuCI	GTSAC	2 cut(s)	623, 1042
NsiI	ATGCAT	1 cut(s)	1780
NspI	RCATGY	3 cut(s)	838, 1125, 1261
NspV	TTCGAA	1 cut(s)	1979
OliI	CACNNNNGTG	1 cut(s)	1426
PagI	TCATGA	1 cut(s)	1617
PasI	CCCWGGG	1 cut(s)	1048
PceI	AGGCCT	1 cut(s)	394
PciI	ACATGT	1 cut(s)	1121
PciSI	GCTCTTC	1 cut(s)	323
PcsI	WCGNNNNNNNCGW	2 cut(s)	139, 263
PdiI	GCCGGC	1 cut(s)	192
PdmI	GAANNNNTTC	1 cut(s)	163
PfeI	GAWTC	7 cut(s)	196, 1003, 1576, 1663, 1676, 1816, 1945
Pfl23II	CGTACG	1 cut(s)	1658
PfoI	TCCNGGA	2 cut(s)	224, 667
PinAI	ACCGGT	1 cut(s)	2030
PkrI	GCNGC	6 cut(s)	203, 283, 561, 840, 1701, 1906
PleI	GAGTC	2 cut(s)	1244, 1348
PmaCI	CACGTG	1 cut(s)	143
PmlI	CACGTG	1 cut(s)	143
PpsI	GAGTC	2 cut(s)	1244, 1348
Ppu21I	YACGTR	1 cut(s)	143
PpuMI	RGGWCCY	1 cut(s)	662
PscI	ACATGT	1 cut(s)	1121
PshBI	ATTAAT	1 cut(s)	516
PsiI	TTATAA	1 cut(s)	890
Psp124BI	GAGCTC	2 cut(s)	257, 1842
Psp5II	RGGWCCY	1 cut(s)	662
Psp6I	CCWGG	5 cut(s)	276, 404, 667, 1047, 1819
PspCI	CACGTG	1 cut(s)	143
PspGI	CCWGG	5 cut(s)	276, 404, 667, 1047, 1819
PspLI	CGTACG	1 cut(s)	1658
PspN4I	GGNNCC	2 cut(s)	1107, 2063
PspPI	GGNCC	2 cut(s)	662, 1106
PspPPI	RGGWCCY	1 cut(s)	662
PsuI	RGATCY	4 cut(s)	457, 1354, 1360, 1446
PvuII	CAGCTG	1 cut(s)	1876
RsaI	GTAC	6 cut(s)	341, 783, 934, 1231, 1660, 1921
RsaNI	GTAC	6 cut(s)	340, 782, 933, 1230, 1659, 1920
RseI	CAYNNNNRTG	2 cut(s)	1120, 1426
SacI	GAGCTC	2 cut(s)	257, 1842
SapI	GCTCTTC	1 cut(s)	323
SaqAI	TTAA	2 cut(s)	516, 1989
SatI	GCNGC	6 cut(s)	202, 282, 560, 839, 1700, 1905
Sau3AI	GATC	8 cut(s)	34, 211, 457, 690, 1354, 1360, 1446, 1770
Sau96I	GGNCC	2 cut(s)	662, 1106
ScaI	AGTACT	1 cut(s)	934
SchI	GAGTC	2 cut(s)	1244, 1349
ScrFI	CCNGG	7 cut(s)	226, 278, 406, 584, 669, 1049, 1821
SduI	GDGCHC	4 cut(s)	30, 257, 1833, 1842
SfaNI	GCATC	9 cut(s)	804, 1165, 1177, 1225, 1231, 1522, 1553, 1729, 1765
SfuI	TTCGAA	1 cut(s)	1979
SgrAI	CRCCGGYG	2 cut(s)	190, 416
SinI	GGWCC	1 cut(s)	662
SmiMI	CAYNNNNRTG	2 cut(s)	1120, 1426
SmlI	CTYRAG	1 cut(s)	1490
SmoI	CTYRAG	1 cut(s)	1490
SseBI	AGGCCT	1 cut(s)	394
SsiI	CCGC	7 cut(s)	57, 202, 282, 611, 716, 791, 1238
SspMI	CTAG	7 cut(s)	705, 959, 1196, 1329, 1358, 1380, 2058
SstI	GAGCTC	2 cut(s)	257, 1842
StuI	AGGCCT	1 cut(s)	394
StyD4I	CCNGG	7 cut(s)	224, 276, 404, 582, 667, 1047, 1819
StyI	CCWWGG	3 cut(s)	477, 1571, 1632
TaaI	ACNGT	2 cut(s)	506, 1183
TaiI	ACGT	2 cut(s)	145, 269
TaqI	TCGA	7 cut(s)	136, 242, 755, 1773, 1792, 1803, 1979
TatI	WGTACW	2 cut(s)	339, 932
TauI	GCSGC	2 cut(s)	204, 284
TfiI	GAWTC	7 cut(s)	196, 1003, 1576, 1663, 1676, 1816, 1945
Tru1I	TTAA	2 cut(s)	516, 1989
Tru9I	TTAA	2 cut(s)	516, 1989
TscAI	CASTG	3 cut(s)	1399, 1431, 2056
TseFI	GTSAC	2 cut(s)	623, 1042
TseI	GCWGC	4 cut(s)	559, 838, 1699, 1904
Tsp45I	GTSAC	2 cut(s)	623, 1042
TspDTI	ATGAA	9 cut(s)	341, 743, 912, 1071, 1151, 1512, 1574, 1634, 2018
TspGWI	ACGGA	2 cut(s)	611, 1145
TspRI	CASTG	3 cut(s)	1399, 1431, 2056
VpaK11BI	GGWCC	1 cut(s)	662
VspI	ATTAAT	1 cut(s)	516
XapI	RAATTY	3 cut(s)	244, 1592, 1912
XbaI	TCTAGA	2 cut(s)	1357, 1379
XceI	RCATGY	3 cut(s)	838, 1125, 1261
XmiI	GTMKAC	1 cut(s)	1262
XmnI	GAANNNNTTC	1 cut(s)	163
XspI	CTAG	7 cut(s)	705, 959, 1196, 1329, 1358, 1380, 2058
ZrmI	AGTACT	1 cut(s)	934
Zsp2I	ATGCAT	1 cut(s)	1780

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.