Prupe.2G277600_v2.0.a1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp02
OG0018081
Physical Location & Seq
Reverse (-)
27845690 .. 27846487
798 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.2G277600.1

Sequence Viewer

Length: 798 bp
ATGCCGAAGAGATCCTTAATTTTGCAGAAGAAACTGAACGAAGTGGAAGCCCAACTCAACCATGTCCTCTCTCTTCCGCCAGAAGATCCTTCGACGACCCCATGCCGCCACGAACTTCAGTGTTATGACATGGAGCAGAGGCTCGCCTTCGTGAAGACTCTGCTGTGCGCTGAGATGGCGTCCCATCCATCGAAGCCCCACCACTTGAAGCACATGGCTTGGAGGCTCGGGGAACTCGAGAAAATCTTCCATGACTGGAACAGTTTCACGTTGACCTCCACGGAACTTGATCAAGATCATGTGGATCATGATGGTAATGGTAATGGTGATGACGGCCGTTCGACATGTTCTTGCACCGAGTCCTGCCTCGACGACGACGACTGCAAGACATCGACTGATGATAGCCTGATTGGCTCACCGTTGGAGCGTAACGAAGAGGCGGCAGAAGGAGGCTCTGAAGTTGAAGAAAATAACAAGGAAATGCCGATGGTGGTGTTTAATAATTCTGTTTTTGAACACGATGAAGGTGAGGAGGAGATGAAGGAAAAGGTGACTGAAGATGAGGAGAGAGATGATGTGGTAGAGGTGATGAAGAGATCATCATCAAATAGAATATCAGAAGAAGAAATAGAGAGGAAGAGAGGGAGTAGTGGGGTTGGGATGACGTGCGGGGCAATGGTGACAGGGTGGATGCTGGGTATGGTTTCCATGGGACTGGTGATGTTGTCTTCTGCAGGTTTCCTCTTTCCATGTGGAGGAGGAGATCACCAATATGGAAATTTTCTTATTCCTACTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

266

Amino Acids

29.59

Weight (kDa)

4.61

Isoelectric Point (pI)

54.78

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0018081)

Species Orthologous Gene IDs
fragaria_vesca FvH4_7g27590
malus_domestica MD07G1254300.v1.1
prunus_persica Prupe.2G277600_v2.0.a1
pyrus_communis pycom01g19370
rosa_laevigata RLG00000026736
rosa_roxburghii Rroxscaffold_4G00283470
rosa_rugosa Rorug01G0383200
rosa_samantha Rh1AG394100 Rh1BG358700 Rh1CG371700 Rh1DG389300

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 725
AciI CCGC 4 cut(s) 77, 106, 440, 669
AclWI GGATC 3 cut(s) 6, 80, 312
AcoI YGGCCR 1 cut(s) 334
AcsI RAATTY 1 cut(s) 778
AcuI CTGAAG 3 cut(s) 101, 477, 576
AcyI GRCGYC 1 cut(s) 179
AfiI CCNNNNNNNGG 1 cut(s) 755
AflIII ACRYGT 1 cut(s) 344
AgsI TTSAA 3 cut(s) 208, 464, 515
AjiI CACGTC 1 cut(s) 666
AlwI GGATC 3 cut(s) 6, 80, 312
Ama87I CYCGRG 2 cut(s) 227, 236
AoxI GGCC 1 cut(s) 334
ApoI RAATTY 1 cut(s) 778
Asp700I GAANNNNTTC 2 cut(s) 245, 263
AspLEI GCGC 1 cut(s) 170
AsuHPI GGTGA 8 cut(s) 338, 408, 539, 562, 598, 691, 730, 758
AvaI CYCGRG 2 cut(s) 227, 236
BbsI GAAGAC 2 cut(s) 161, 720
BccI CCATC 5 cut(s) 169, 192, 196, 305, 481
BceAI ACGGC 2 cut(s) 321, 349
BclI TGATCA 1 cut(s) 289
BfmI CTRYAG 1 cut(s) 732
BfuAI ACCTGC 1 cut(s) 725
BglI GCCNNNNNGGC 1 cut(s) 411
BisI GCNGC 2 cut(s) 106, 441
BlsI GCNGC 2 cut(s) 107, 442
BmeT110I CYCGRG 2 cut(s) 227, 236
BmgBI CACGTC 1 cut(s) 666
BmsI GCATC 1 cut(s) 681
BpiI GAAGAC 2 cut(s) 161, 720
BsaBI GATNNNNATC 2 cut(s) 294, 601
BsaHI GRCGYC 1 cut(s) 179
BsaJI CCNNGG 2 cut(s) 279, 708
Bsc4I CCNNNNNNNGG 1 cut(s) 755
Bse1I ACTGG 2 cut(s) 260, 720
Bse3DI GCAATG 1 cut(s) 681
Bse8I GATNNNNATC 2 cut(s) 294, 601
BseDI CCNNGG 2 cut(s) 279, 708
BseGI GGATG 3 cut(s) 184, 666, 696
BseJI GATNNNNATC 2 cut(s) 294, 601
BseLI CCNNNNNNNGG 1 cut(s) 755
BseMI GCAATG 1 cut(s) 681
BseMII CTCAG 1 cut(s) 162
BseNI ACTGG 2 cut(s) 260, 720
BseRI GAGGAG 5 cut(s) 545, 548, 578, 771, 774
BseX3I CGGCCG 1 cut(s) 334
BseYI CCCAGC 1 cut(s) 694
Bsh1285I CGRYCG 1 cut(s) 337
BshFI GGCC 1 cut(s) 336
BsiEI CGRYCG 1 cut(s) 337
BsiHKCI CYCGRG 2 cut(s) 227, 236
BslFI GGGAC 2 cut(s) 166, 726
BslI CCNNNNNNNGG 1 cut(s) 755
BsmFI GGGAC 2 cut(s) 166, 726
BsnI GGCC 1 cut(s) 336
BsoBI CYCGRG 2 cut(s) 227, 236
Bsp143I GATC 7 cut(s) 11, 85, 289, 295, 304, 596, 763
Bsp19I CCATGG 1 cut(s) 708
BspACI CCGC 4 cut(s) 77, 106, 440, 669
BspANI GGCC 1 cut(s) 336
BspCNI CTCAG 1 cut(s) 163
BspHI TCATGA 1 cut(s) 307
BspMAI CTGCAG 1 cut(s) 736
BspMI ACCTGC 1 cut(s) 725
BspPI GGATC 3 cut(s) 6, 80, 312
BsrDI GCAATG 1 cut(s) 681
BsrI ACTGG 2 cut(s) 260, 720
BssECI CCNNGG 2 cut(s) 279, 708
BssMI GATC 7 cut(s) 11, 85, 289, 295, 304, 596, 763
BssNI GRCGYC 1 cut(s) 179
BssT1I CCWWGG 1 cut(s) 708
Bst4CI ACNGT 2 cut(s) 263, 420
Bst6I CTCTTC 5 cut(s) 2, 78, 429, 587, 632
BstACI GRCGYC 1 cut(s) 179
BstC8I GCNNGC 1 cut(s) 144
BstDEI CTNAG 1 cut(s) 171
BstDSI CCRYGG 2 cut(s) 279, 708
BstF5I GGATG 3 cut(s) 184, 666, 696
BstHHI GCGC 1 cut(s) 170
BstKTI GATC 7 cut(s) 14, 88, 292, 298, 307, 599, 766
BstMBI GATC 7 cut(s) 11, 85, 289, 295, 304, 596, 763
BstMCI CGRYCG 1 cut(s) 337
BstMWI GCNNNNNNNGC 2 cut(s) 176, 411
BstNSI RCATGY 1 cut(s) 348
BstSFI CTRYAG 1 cut(s) 732
BstV2I GAAGAC 2 cut(s) 161, 720
BstX2I RGATCY 2 cut(s) 11, 85
BstXI CCANNNNNNTGG 1 cut(s) 715
BstYI RGATCY 2 cut(s) 11, 85
BstZI CGGCCG 1 cut(s) 334
BsuRI GGCC 1 cut(s) 336
BtgI CCRYGG 2 cut(s) 279, 708
BtrI CACGTC 1 cut(s) 666
BtsCI GGATG 3 cut(s) 184, 666, 696
BtsIMutI CAGTG 1 cut(s) 125
BveI ACCTGC 1 cut(s) 725
Cac8I GCNNGC 1 cut(s) 144
CciI TCATGA 1 cut(s) 307
CfoI GCGC 1 cut(s) 170
CseI GACGC 1 cut(s) 168
CspCI CAANNNNNGTGG 2 cut(s) 268, 303
CviJI RGCY 9 cut(s) 50, 142, 196, 218, 226, 336, 405, 414, 453
CviKI_1 RGCY 9 cut(s) 50, 142, 196, 218, 226, 336, 405, 414, 453
DdeI CTNAG 1 cut(s) 171
DpnI GATC 7 cut(s) 13, 87, 291, 297, 306, 598, 765
DpnII GATC 7 cut(s) 11, 85, 289, 295, 304, 596, 763
EaeI YGGCCR 1 cut(s) 334
EagI CGGCCG 1 cut(s) 334
Eam1104I CTCTTC 5 cut(s) 2, 78, 429, 587, 632
EarI CTCTTC 5 cut(s) 2, 78, 429, 587, 632
EciI GGCGGA 1 cut(s) 66
EclXI CGGCCG 1 cut(s) 334
Eco130I CCWWGG 1 cut(s) 708
Eco52I CGGCCG 1 cut(s) 334
Eco57I CTGAAG 3 cut(s) 101, 477, 576
Eco88I CYCGRG 2 cut(s) 227, 236
EcoT14I CCWWGG 1 cut(s) 708
ErhI CCWWGG 1 cut(s) 708
FalI AAGNNNNNCTT 1 cut(s) 31
FaqI GGGAC 2 cut(s) 166, 726
FauI CCCGC 1 cut(s) 662
FbaI TGATCA 1 cut(s) 289
Fnu4HI GCNGC 2 cut(s) 106, 441
FokI GGATG 3 cut(s) 171, 673, 703
Fsp4HI GCNGC 2 cut(s) 106, 441
GlaI GCGC 1 cut(s) 169
GluI GCNGC 2 cut(s) 106, 441
GsaI CCCAGC 1 cut(s) 698
HaeIII GGCC 1 cut(s) 336
HgaI GACGC 1 cut(s) 168
HhaI GCGC 1 cut(s) 170
Hin1I GRCGYC 1 cut(s) 179
Hin6I GCGC 1 cut(s) 168
HinP1I GCGC 1 cut(s) 168
HincII GTYRAC 1 cut(s) 273
HindII GTYRAC 1 cut(s) 273
HinfI GANTC 2 cut(s) 157, 359
HphI GGTGA 8 cut(s) 338, 408, 539, 562, 598, 691, 730, 758
Hpy166II GTNNAC 1 cut(s) 273
Hpy188I TCNGA 2 cut(s) 457, 619
Hpy188III TCNNGA 4 cut(s) 151, 238, 293, 308
Hpy8I GTNNAC 1 cut(s) 273
Hpy99I CGWCG 4 cut(s) 97, 374, 377, 380
HpyAV CCTTC 5 cut(s) 99, 157, 440, 518, 535
HpyCH4III ACNGT 2 cut(s) 263, 420
HpyCH4IV ACGT 2 cut(s) 269, 665
HpyCH4V TGCA 4 cut(s) 25, 354, 384, 734
HpyF10VI GCNNNNNNNGC 2 cut(s) 176, 411
HpyF3I CTNAG 1 cut(s) 171
HpySE526I ACGT 2 cut(s) 269, 665
Hsp92I GRCGYC 1 cut(s) 179
HspAI GCGC 1 cut(s) 168
Ksp22I TGATCA 1 cut(s) 289
Kzo9I GATC 7 cut(s) 11, 85, 289, 295, 304, 596, 763
LmnI GCTCC 2 cut(s) 133, 424
LpnPI CCDG 8 cut(s) 93, 241, 376, 419, 669, 680, 701, 720
LweI GCATC 1 cut(s) 681
MaeII ACGT 2 cut(s) 269, 665
MaeIII GTNAC 3 cut(s) 428, 550, 679
MalI GATC 7 cut(s) 13, 87, 291, 297, 306, 598, 765
MboI GATC 7 cut(s) 11, 85, 289, 295, 304, 596, 763
MflI RGATCY 2 cut(s) 11, 85
MluCI AATT 3 cut(s) 18, 502, 778
MlyI GAGTC 2 cut(s) 151, 368
MmeI TCCRAC 1 cut(s) 402
MroXI GAANNNNTTC 2 cut(s) 245, 263
MseI TTAA 2 cut(s) 17, 498
MslI CAYNNNNRTG 1 cut(s) 771
MwoI GCNNNNNNNGC 2 cut(s) 176, 411
NcoI CCATGG 1 cut(s) 708
NdeII GATC 7 cut(s) 11, 85, 289, 295, 304, 596, 763
NmuCI GTSAC 2 cut(s) 550, 679
NspI RCATGY 1 cut(s) 348
PaeR7I CTCGAG 1 cut(s) 236
PagI TCATGA 1 cut(s) 307
PciI ACATGT 1 cut(s) 344
PcsI WCGNNNNNNNCGW 2 cut(s) 234, 375
PdmI GAANNNNTTC 2 cut(s) 245, 263
PkrI GCNGC 2 cut(s) 107, 442
PleI GAGTC 2 cut(s) 151, 367
PpsI GAGTC 2 cut(s) 151, 367
PscI ACATGT 1 cut(s) 344
PspFI CCCAGC 1 cut(s) 694
PstI CTGCAG 1 cut(s) 736
PsuI RGATCY 2 cut(s) 11, 85
RseI CAYNNNNRTG 1 cut(s) 771
SaqAI TTAA 2 cut(s) 17, 498
SatI GCNGC 2 cut(s) 106, 441
Sau3AI GATC 7 cut(s) 11, 85, 289, 295, 304, 596, 763
SchI GAGTC 2 cut(s) 151, 368
SetI ASST 7 cut(s) 272, 278, 529, 552, 588, 668, 739
SfaNI GCATC 1 cut(s) 681
SfcI CTRYAG 1 cut(s) 732
Sfr274I CTCGAG 1 cut(s) 236
SlaI CTCGAG 1 cut(s) 236
SmiMI CAYNNNNRTG 1 cut(s) 771
SmlI CTYRAG 1 cut(s) 236
SmoI CTYRAG 1 cut(s) 236
Sse9I AATT 3 cut(s) 18, 502, 778
SsiI CCGC 4 cut(s) 77, 106, 440, 669
StyI CCWWGG 1 cut(s) 708
TaaI ACNGT 2 cut(s) 263, 420
TaiI ACGT 2 cut(s) 272, 668
TaqI TCGA 6 cut(s) 92, 191, 237, 341, 369, 392
TasI AATT 3 cut(s) 18, 502, 778
TauI GCSGC 2 cut(s) 108, 443
Tru1I TTAA 2 cut(s) 17, 498
Tru9I TTAA 2 cut(s) 17, 498
TscAI CASTG 1 cut(s) 125
TseFI GTSAC 2 cut(s) 550, 679
Tsp45I GTSAC 2 cut(s) 550, 679
TspDTI ATGAA 3 cut(s) 537, 554, 605
TspGWI ACGGA 1 cut(s) 296
TspRI CASTG 1 cut(s) 125
XapI RAATTY 1 cut(s) 778
XceI RCATGY 1 cut(s) 348
XhoI CTCGAG 1 cut(s) 236
XmnI GAANNNNTTC 2 cut(s) 245, 263
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.