Rorug01G0383200

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000001
OG0018081
Physical Location & Seq
Forward (+)
49547724 .. 49551750
4027 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug01G0383200.1

Sequence Viewer

Length: 381 bp
ATGTCATGCATCGAGCTAGAACTACATATATCCAAGGAGTTGACCCAACTCTCTATGATCCAACTTCCTTACGTCGCTCGTCCGGCAGTGGCTCGTGAACACCGACGACGGAGGCGGCGCAGACTGGGTGGTTCTATGCGGTGGCCGGTGGCGGTAACAAATGCTTCATTGATGGGGTCAAGTAGCAGCGTGGATGCAGGGGATCCTAACCCGATTTTGGTTTTTTGGGTCTGGATGCTCTTTTCAGGTCGTTGTTTTGTCCTCAAGTCGGTGGAGGCTGCGTGGCAAGTCATGGCTGCGGGTCGTGGCGGTGGAGGTTGCACGGTGAGTGAGTCGTGGAGGCGGTGTGAGACAGGTTGCACAGTGTGGAGATTGGAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

126

Amino Acids

14.14

Weight (kDa)

9.94

Isoelectric Point (pI)

78.2

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0018081)

Species Orthologous Gene IDs
fragaria_vesca FvH4_7g27590
malus_domestica MD07G1254300.v1.1
prunus_persica Prupe.2G277600_v2.0.a1
pyrus_communis pycom01g19370
rosa_laevigata RLG00000026736
rosa_roxburghii Rroxscaffold_4G00283470
rosa_rugosa Rorug01G0383200
rosa_samantha Rh1AG394100 Rh1BG358700 Rh1CG371700 Rh1DG389300

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 6 cut(s) 115, 139, 152, 299, 309, 343
AclWI GGATC 3 cut(s) 52, 197, 210
AcoI YGGCCR 1 cut(s) 143
AdeI CACNNNGTG 1 cut(s) 366
AfiI CCNNNNNNNGG 2 cut(s) 217, 268
AluBI AGCT 1 cut(s) 16
AluI AGCT 1 cut(s) 16
Alw26I GTCTC 1 cut(s) 344
AlwI GGATC 3 cut(s) 52, 197, 210
AoxI GGCC 1 cut(s) 143
ApeKI GCWGC 3 cut(s) 186, 278, 296
AspLEI GCGC 1 cut(s) 120
AsuHPI GGTGA 1 cut(s) 337
BamHI GGATCC 1 cut(s) 202
BauI CACGAG 1 cut(s) 93
BbvI GCAGC 3 cut(s) 198, 265, 283
BccI CCATC 1 cut(s) 166
BcoDI GTCTC 1 cut(s) 344
BfaI CTAG 1 cut(s) 17
BisI GCNGC 4 cut(s) 116, 187, 279, 297
BlsI GCNGC 4 cut(s) 117, 188, 280, 298
BmiI GGNNCC 1 cut(s) 204
BmrI ACTGGG 1 cut(s) 134
BmsI GCATC 3 cut(s) 18, 184, 225
BmuI ACTGGG 1 cut(s) 134
BpuEI CTTGAG 1 cut(s) 248
BsaJI CCNNGG 1 cut(s) 33
BsaXI ACNNNNNCTCC 4 cut(s) 266, 296, 331, 361
Bsc4I CCNNNNNNNGG 2 cut(s) 217, 268
Bse118I RCCGGY 1 cut(s) 145
Bse1I ACTGG 1 cut(s) 129
BseDI CCNNGG 1 cut(s) 33
BseGI GGATG 2 cut(s) 199, 240
BseLI CCNNNNNNNGG 2 cut(s) 217, 268
BseNI ACTGG 1 cut(s) 129
BseXI GCAGC 3 cut(s) 198, 265, 283
BshFI GGCC 1 cut(s) 145
BsiSI CCGG 2 cut(s) 83, 146
BslI CCNNNNNNNGG 2 cut(s) 217, 268
BsmAI GTCTC 1 cut(s) 344
BsnI GGCC 1 cut(s) 145
Bsp143I GATC 2 cut(s) 57, 202
BspACI CCGC 6 cut(s) 115, 139, 152, 299, 309, 343
BspANI GGCC 1 cut(s) 145
BspLI GGNNCC 1 cut(s) 204
BspPI GGATC 3 cut(s) 52, 197, 210
BsrFI RCCGGY 1 cut(s) 145
BsrI ACTGG 1 cut(s) 129
BssAI RCCGGY 1 cut(s) 145
BssECI CCNNGG 1 cut(s) 33
BssMI GATC 2 cut(s) 57, 202
BssSI CACGAG 1 cut(s) 93
BssT1I CCWWGG 1 cut(s) 33
Bst2BI CACGAG 1 cut(s) 93
Bst4CI ACNGT 2 cut(s) 325, 364
BstF5I GGATG 2 cut(s) 199, 240
BstHHI GCGC 1 cut(s) 120
BstKTI GATC 2 cut(s) 60, 205
BstMAI GTCTC 1 cut(s) 344
BstMBI GATC 2 cut(s) 57, 202
BstMWI GCNNNNNNNGC 1 cut(s) 83
BstV1I GCAGC 3 cut(s) 198, 265, 283
BstX2I RGATCY 1 cut(s) 202
BstYI RGATCY 1 cut(s) 202
BsuRI GGCC 1 cut(s) 145
BtsCI GGATG 2 cut(s) 199, 240
BtsI GCAGTG 1 cut(s) 93
BtsIMutI CAGTG 2 cut(s) 93, 369
CfoI GCGC 1 cut(s) 120
Cfr10I RCCGGY 1 cut(s) 145
CviAII CATG 2 cut(s) 6, 292
CviJI RGCY 5 cut(s) 16, 92, 145, 278, 296
CviKI_1 RGCY 5 cut(s) 16, 92, 145, 278, 296
DpnI GATC 2 cut(s) 59, 204
DpnII GATC 2 cut(s) 57, 202
DraIII CACNNNGTG 1 cut(s) 366
EaeI YGGCCR 1 cut(s) 143
Eco130I CCWWGG 1 cut(s) 33
EcoT14I CCWWGG 1 cut(s) 33
EcoT22I ATGCAT 1 cut(s) 11
ErhI CCWWGG 1 cut(s) 33
FaeI CATG 2 cut(s) 9, 295
FaiI YATR 6 cut(s) 7, 27, 29, 56, 137, 293
FatI CATG 2 cut(s) 5, 291
FauI CCCGC 1 cut(s) 292
Fnu4HI GCNGC 4 cut(s) 116, 187, 279, 297
FokI GGATG 2 cut(s) 206, 247
Fsp4HI GCNGC 4 cut(s) 116, 187, 279, 297
FspBI CTAG 1 cut(s) 17
GlaI GCGC 1 cut(s) 119
GluI GCNGC 4 cut(s) 116, 187, 279, 297
HaeIII GGCC 1 cut(s) 145
HapII CCGG 2 cut(s) 83, 146
HhaI GCGC 1 cut(s) 120
Hin1II CATG 2 cut(s) 9, 295
Hin6I GCGC 1 cut(s) 118
HinP1I GCGC 1 cut(s) 118
HincII GTYRAC 1 cut(s) 42
HindII GTYRAC 1 cut(s) 42
HinfI GANTC 1 cut(s) 332
HpaII CCGG 2 cut(s) 83, 146
HphI GGTGA 1 cut(s) 337
Hpy166II GTNNAC 2 cut(s) 42, 98
Hpy188III TCNNGA 2 cut(s) 95, 232
Hpy8I GTNNAC 2 cut(s) 42, 98
Hpy99I CGWCG 3 cut(s) 77, 108, 111
HpyCH4III ACNGT 2 cut(s) 325, 364
HpyCH4IV ACGT 1 cut(s) 72
HpyCH4V TGCA 4 cut(s) 9, 197, 321, 360
HpyF10VI GCNNNNNNNGC 1 cut(s) 83
HpySE526I ACGT 1 cut(s) 72
Hsp92II CATG 2 cut(s) 9, 295
HspAI GCGC 1 cut(s) 118
Kzo9I GATC 2 cut(s) 57, 202
LpnPI CCDG 7 cut(s) 96, 110, 159, 183, 217, 231, 339
Lsp1109I GCAGC 3 cut(s) 198, 265, 283
LweI GCATC 3 cut(s) 18, 184, 225
MaeI CTAG 1 cut(s) 17
MaeII ACGT 1 cut(s) 72
MaeIII GTNAC 1 cut(s) 154
MalI GATC 2 cut(s) 59, 204
MboI GATC 2 cut(s) 57, 202
MflI RGATCY 1 cut(s) 202
MlyI GAGTC 1 cut(s) 341
MmeI TCCRAC 1 cut(s) 85
MnlI CCTC 5 cut(s) 105, 268, 272, 308, 333
Mph1103I ATGCAT 1 cut(s) 11
MspI CCGG 2 cut(s) 83, 146
MwoI GCNNNNNNNGC 1 cut(s) 83
NdeII GATC 2 cut(s) 57, 202
NlaIII CATG 2 cut(s) 9, 295
NlaIV GGNNCC 1 cut(s) 204
NsiI ATGCAT 1 cut(s) 11
PcsI WCGNNNNNNNCGW 1 cut(s) 100
PkrI GCNGC 4 cut(s) 117, 188, 280, 298
PleI GAGTC 1 cut(s) 340
PpsI GAGTC 1 cut(s) 340
PspN4I GGNNCC 1 cut(s) 204
PsuI RGATCY 1 cut(s) 202
SatI GCNGC 4 cut(s) 116, 187, 279, 297
Sau3AI GATC 2 cut(s) 57, 202
SchI GAGTC 1 cut(s) 341
SetI ASST 5 cut(s) 18, 75, 250, 319, 358
SfaNI GCATC 3 cut(s) 18, 184, 225
SmlI CTYRAG 1 cut(s) 263
SmoI CTYRAG 1 cut(s) 263
SsiI CCGC 6 cut(s) 115, 139, 152, 299, 309, 343
SspMI CTAG 1 cut(s) 17
StyI CCWWGG 1 cut(s) 33
TaaI ACNGT 2 cut(s) 325, 364
TaiI ACGT 1 cut(s) 75
TaqI TCGA 1 cut(s) 12
TauI GCSGC 1 cut(s) 118
TscAI CASTG 2 cut(s) 93, 369
TseI GCWGC 3 cut(s) 186, 278, 296
TspDTI ATGAA 1 cut(s) 156
TspGWI ACGGA 1 cut(s) 124
TspRI CASTG 2 cut(s) 93, 369
XspI CTAG 1 cut(s) 17
Zsp2I ATGCAT 1 cut(s) 11
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.