Rh1BG358700

No description available

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1B
Physical Location & Seq
Reverse (-)
48941647 .. 48941976
330 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1BG358700.1

Sequence Viewer

Length: 330 bp
ATGCCGGTGACGGTGTTTAATAATGACTTATTTGAGGAAAAGGTTGATGATGATCGGGTTCAAGATGAGTTTCTTGATCGGGTCGAAGATGTGTTTGATGATATGTCTCATAATGGCGCTTCTGTTGAAGATGGGAACGAGGAGAAGGAGATTGGGGCTGACATGGATTTGAAGGAGAGTGAAAAGAAGGAAAATGGTTTAGGGTTTGGGAAGTTATGTGGGGCTGTGGTGAGTGGGTTTGTGATTGGAATGTTTTCGATGGCTTTGATGATGGAGAGCCTTGATTACGAGGGCTATGAGGGACATGGACACTTTCTTACTCCTACTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

109

Amino Acids

12.15

Weight (kDa)

4.1

Isoelectric Point (pI)

24.89

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0018081)

Species Orthologous Gene IDs
fragaria_vesca FvH4_7g27590
malus_domestica MD07G1254300.v1.1
prunus_persica Prupe.2G277600_v2.0.a1
pyrus_communis pycom01g19370
rosa_laevigata RLG00000026736
rosa_roxburghii Rroxscaffold_4G00283470
rosa_rugosa Rorug01G0383200
rosa_samantha Rh1AG394100 Rh1BG358700 Rh1CG371700 Rh1DG389300

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AgsI TTSAA 3 cut(s) 62, 128, 172
Alw26I GTCTC 1 cut(s) 111
Asp700I GAANNNNTTC 1 cut(s) 253
AspLEI GCGC 1 cut(s) 119
AsuHPI GGTGA 2 cut(s) 19, 241
BccI CCATC 3 cut(s) 125, 253, 265
BcoDI GTCTC 1 cut(s) 111
BfoI RGCGCY 1 cut(s) 120
BsaBI GATNNNNATC 1 cut(s) 51
Bse118I RCCGGY 1 cut(s) 4
Bse8I GATNNNNATC 1 cut(s) 51
BseJI GATNNNNATC 1 cut(s) 51
BseRI GAGGAG 1 cut(s) 155
BsiSI CCGG 1 cut(s) 5
BslFI GGGAC 1 cut(s) 315
BsmAI GTCTC 1 cut(s) 111
BsmFI GGGAC 1 cut(s) 315
Bsp143I GATC 2 cut(s) 52, 76
BsrFI RCCGGY 1 cut(s) 4
BssAI RCCGGY 1 cut(s) 4
BssMI GATC 2 cut(s) 52, 76
Bst4CI ACNGT 1 cut(s) 13
BstDEI CTNAG 1 cut(s) 327
BstH2I RGCGCY 1 cut(s) 120
BstHHI GCGC 1 cut(s) 119
BstKTI GATC 2 cut(s) 55, 79
BstMAI GTCTC 1 cut(s) 111
BstMBI GATC 2 cut(s) 52, 76
CfoI GCGC 1 cut(s) 119
Cfr10I RCCGGY 1 cut(s) 4
CviAII CATG 2 cut(s) 163, 305
CviJI RGCY 5 cut(s) 158, 224, 263, 279, 294
CviKI_1 RGCY 5 cut(s) 158, 224, 263, 279, 294
DdeI CTNAG 1 cut(s) 327
DpnI GATC 2 cut(s) 54, 78
DpnII GATC 2 cut(s) 52, 76
FaeI CATG 2 cut(s) 166, 308
FaiI YATR 6 cut(s) 104, 111, 164, 217, 297, 306
FaqI GGGAC 1 cut(s) 315
FatI CATG 2 cut(s) 162, 304
GlaI GCGC 1 cut(s) 118
HaeII RGCGCY 1 cut(s) 120
HapII CCGG 1 cut(s) 5
HhaI GCGC 1 cut(s) 119
Hin1II CATG 2 cut(s) 166, 308
Hin6I GCGC 1 cut(s) 117
HinP1I GCGC 1 cut(s) 117
HpaII CCGG 1 cut(s) 5
HphI GGTGA 2 cut(s) 19, 241
Hpy188III TCNNGA 2 cut(s) 62, 74
HpyAV CCTTC 3 cut(s) 139, 166, 181
HpyCH4III ACNGT 1 cut(s) 13
HpyF3I CTNAG 1 cut(s) 327
Hsp92II CATG 2 cut(s) 166, 308
HspAI GCGC 1 cut(s) 117
Kzo9I GATC 2 cut(s) 52, 76
LpnPI CCDG 1 cut(s) 18
MaeIII GTNAC 1 cut(s) 7
MalI GATC 2 cut(s) 54, 78
MboI GATC 2 cut(s) 52, 76
MboII GAAGA 2 cut(s) 98, 140
MnlI CCTC 4 cut(s) 28, 133, 283, 292
MroXI GAANNNNTTC 1 cut(s) 253
MseI TTAA 1 cut(s) 18
MspI CCGG 1 cut(s) 5
NdeII GATC 2 cut(s) 52, 76
NlaIII CATG 2 cut(s) 166, 308
NmuCI GTSAC 1 cut(s) 7
PdmI GAANNNNTTC 1 cut(s) 253
SaqAI TTAA 1 cut(s) 18
Sau3AI GATC 2 cut(s) 52, 76
SetI ASST 1 cut(s) 45
TaaI ACNGT 1 cut(s) 13
TaqI TCGA 2 cut(s) 84, 257
Tru1I TTAA 1 cut(s) 18
Tru9I TTAA 1 cut(s) 18
TseFI GTSAC 1 cut(s) 7
Tsp45I GTSAC 1 cut(s) 7
XmnI GAANNNNTTC 1 cut(s) 253
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.