Rh1AG394100

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1A
OG0018081
Physical Location & Seq
Reverse (-)
62242543 .. 62243717
1175 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1AG394100.1

Sequence Viewer

Length: 795 bp
ATGAGGAACAAGAGGCCCTCAATTTTGCCGAAGAAACTCAATGAACTCGACCACCTAGTCAACAAGACCTTCTCTGTTCAACCCGATAACCCCAGTCTCCAACGCAATGAAGCAGAAATTGAGCAGAGTCTGACGTTCGTGAAGAATCTGCTGTCGGCGGAGATGGCATCACATCCGGCGAAGCAGCACTACTTGGAGAAAATGTCGGAGAGAGTACGGGAAATCGAGGCGGCGTTTCGCGGCTTTGGGACAGGTTCCAGTACGACAACCTCGACGCTCGACCATGTCGATAATGTTGGAGACGACGACGACGACGACGACGACGACGATCATGCATCGAAGTGTTCTTGCAACAAGTCTTCTCTCCAGGACGAGGAGGAAGGTGACAGTGTTTCAGATGATCTTGAGTCAACGCTTGGTCAAGATACGGGAGGTTGTGTGGATTTGGTTGAAGAGAAGAAGGCTATGCCGGTGACGGTGTTTAATAATGAATTATTTGAGGAAAAGGTTGATGATGATCGGGTTGAAGATGAGTCTCTTGATCGGGTCGAAGATGTGTTTGATGATATGTCTCATAATGGCGCTTCTGTTGAAGATGGGAAGGAGGAGAAGGAGATTGGGGCTGACATGGATTTGAAGGAGAGTGAAAAGAAGGAAAATGGTTTAGGGTTTGGGAAGTTATGTGGGGCTGTGGTGAGTGGGTTTGTGATTGGAATGTTTTCGATGGCTTTGATGATGGAGAGCCTTGATTACGAGGGCTATGAGGGACATGGACACTTTCTTACTCCTACTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

264

Amino Acids

29.24

Weight (kDa)

4.32

Isoelectric Point (pI)

49.05

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF7610 PF24583 9 - 80 2.2e-20 Domain of unknown function (DUF7610)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0018081)

Species Orthologous Gene IDs
fragaria_vesca FvH4_7g27590
malus_domestica MD07G1254300.v1.1
prunus_persica Prupe.2G277600_v2.0.a1
pyrus_communis pycom01g19370
rosa_laevigata RLG00000026736
rosa_roxburghii Rroxscaffold_4G00283470
rosa_rugosa Rorug01G0383200
rosa_samantha Rh1AG394100 Rh1BG358700 Rh1CG371700 Rh1DG389300

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 56
AccII CGCG 1 cut(s) 240
AciI CCGC 3 cut(s) 158, 230, 240
AfaI GTAC 2 cut(s) 216, 262
AfiI CCNNNNNNNGG 1 cut(s) 373
AgsI TTSAA 5 cut(s) 80, 452, 527, 593, 637
AjnI CCWGG 1 cut(s) 366
Alw26I GTCTC 4 cut(s) 101, 294, 540, 576
AlwNI CAGNNNCTG 1 cut(s) 130
AoxI GGCC 1 cut(s) 14
ApeKI GCWGC 1 cut(s) 184
Asp700I GAANNNNTTC 1 cut(s) 718
AspLEI GCGC 1 cut(s) 584
AspS9I GGNCC 1 cut(s) 15
AsuHPI GGTGA 3 cut(s) 395, 484, 706
BarI GAAGNNNNNNTAC 2 cut(s) 173, 205
BbsI GAAGAC 1 cut(s) 351
BbvI GCAGC 1 cut(s) 196
BccI CCATC 4 cut(s) 157, 590, 718, 730
BcgI CGANNNNNNTGC 2 cut(s) 314, 348
BciT130I CCWGG 1 cut(s) 368
BcoDI GTCTC 4 cut(s) 101, 294, 540, 576
BfaI CTAG 1 cut(s) 56
BfoI RGCGCY 1 cut(s) 585
BisI GCNGC 3 cut(s) 185, 231, 241
BlsI GCNGC 3 cut(s) 186, 232, 242
Bme1390I CCNGG 1 cut(s) 368
BmgT120I GGNCC 1 cut(s) 15
BmiI GGNNCC 1 cut(s) 256
BmrFI CCNGG 1 cut(s) 368
BmrI ACTGGG 1 cut(s) 87
BmsI GCATC 2 cut(s) 176, 344
BmuI ACTGGG 1 cut(s) 87
BpiI GAAGAC 1 cut(s) 351
BpmI CTGGAG 1 cut(s) 350
BpuEI CTTGAG 1 cut(s) 425
BsaBI GATNNNNATC 1 cut(s) 516
BsaXI ACNNNNNCTCC 4 cut(s) 188, 218, 423, 453
Bsc4I CCNNNNNNNGG 1 cut(s) 373
Bse118I RCCGGY 1 cut(s) 469
Bse1I ACTGG 2 cut(s) 93, 258
Bse3DI GCAATG 1 cut(s) 112
Bse8I GATNNNNATC 1 cut(s) 516
BseBI CCWGG 1 cut(s) 368
BseGI GGATG 1 cut(s) 172
BseJI GATNNNNATC 1 cut(s) 516
BseLI CCNNNNNNNGG 1 cut(s) 373
BseMI GCAATG 1 cut(s) 112
BseNI ACTGG 2 cut(s) 93, 258
BseRI GAGGAG 2 cut(s) 389, 620
BseXI GCAGC 1 cut(s) 196
Bsh1236I CGCG 1 cut(s) 240
BshFI GGCC 1 cut(s) 16
BsiSI CCGG 2 cut(s) 176, 470
BslFI GGGAC 2 cut(s) 262, 780
BslI CCNNNNNNNGG 1 cut(s) 373
BsmAI GTCTC 4 cut(s) 101, 294, 540, 576
BsmBI CGTCTC 1 cut(s) 294
BsmFI GGGAC 2 cut(s) 262, 780
BsnI GGCC 1 cut(s) 16
Bsp143I GATC 4 cut(s) 328, 400, 517, 541
BspACI CCGC 3 cut(s) 158, 230, 240
BspANI GGCC 1 cut(s) 16
BspFNI CGCG 1 cut(s) 240
BspLI GGNNCC 1 cut(s) 256
BsrDI GCAATG 1 cut(s) 112
BsrFI RCCGGY 1 cut(s) 469
BsrI ACTGG 2 cut(s) 93, 258
BssAI RCCGGY 1 cut(s) 469
BssMI GATC 4 cut(s) 328, 400, 517, 541
Bst2UI CCWGG 1 cut(s) 368
Bst4CI ACNGT 2 cut(s) 389, 478
Bst6I CTCTTC 1 cut(s) 447
BstDEI CTNAG 1 cut(s) 792
BstF5I GGATG 1 cut(s) 172
BstFNI CGCG 1 cut(s) 240
BstH2I RGCGCY 1 cut(s) 585
BstHHI GCGC 1 cut(s) 584
BstKTI GATC 4 cut(s) 331, 403, 520, 544
BstMAI GTCTC 4 cut(s) 101, 294, 540, 576
BstMBI GATC 4 cut(s) 328, 400, 517, 541
BstMWI GCNNNNNNNGC 1 cut(s) 164
BstNI CCWGG 1 cut(s) 368
BstSCI CCNGG 1 cut(s) 366
BstUI CGCG 1 cut(s) 240
BstV1I GCAGC 1 cut(s) 196
BstV2I GAAGAC 1 cut(s) 351
BsuRI GGCC 1 cut(s) 16
BtsCI GGATG 1 cut(s) 172
BtsIMutI CAGTG 1 cut(s) 394
CaiI CAGNNNCTG 1 cut(s) 130
CfoI GCGC 1 cut(s) 584
Cfr10I RCCGGY 1 cut(s) 469
Cfr13I GGNCC 1 cut(s) 15
CseI GACGC 1 cut(s) 283
Csp6I GTAC 2 cut(s) 215, 261
CviAII CATG 4 cut(s) 284, 332, 628, 770
CviJI RGCY 8 cut(s) 16, 243, 464, 623, 689, 728, 744, 759
CviKI_1 RGCY 8 cut(s) 16, 243, 464, 623, 689, 728, 744, 759
CviQI GTAC 2 cut(s) 215, 261
DdeI CTNAG 1 cut(s) 792
DpnI GATC 4 cut(s) 330, 402, 519, 543
DpnII GATC 4 cut(s) 328, 400, 517, 541
DrdI GACNNNNNNGTC 1 cut(s) 56
DseDI GACNNNNNNGTC 1 cut(s) 56
Eam1104I CTCTTC 1 cut(s) 447
EarI CTCTTC 1 cut(s) 447
EciI GGCGGA 1 cut(s) 173
EcoO109I RGGNCCY 1 cut(s) 15
EcoRII CCWGG 1 cut(s) 366
EcoT22I ATGCAT 1 cut(s) 337
Esp3I CGTCTC 1 cut(s) 294
FaeI CATG 4 cut(s) 287, 335, 631, 773
FaiI YATR 9 cut(s) 285, 333, 467, 569, 576, 629, 682, 762, 771
FaqI GGGAC 2 cut(s) 262, 780
FatI CATG 4 cut(s) 283, 331, 627, 769
Fnu4HI GCNGC 3 cut(s) 185, 231, 241
FokI GGATG 1 cut(s) 159
Fsp4HI GCNGC 3 cut(s) 185, 231, 241
FspBI CTAG 1 cut(s) 56
GlaI GCGC 1 cut(s) 583
GluI GCNGC 3 cut(s) 185, 231, 241
GsuI CTGGAG 1 cut(s) 350
HaeII RGCGCY 1 cut(s) 585
HaeIII GGCC 1 cut(s) 16
HapII CCGG 2 cut(s) 176, 470
HgaI GACGC 1 cut(s) 283
HhaI GCGC 1 cut(s) 584
Hin1II CATG 4 cut(s) 287, 335, 631, 773
Hin6I GCGC 1 cut(s) 582
HinP1I GCGC 1 cut(s) 582
HincII GTYRAC 2 cut(s) 61, 411
HindII GTYRAC 2 cut(s) 61, 411
HinfI GANTC 4 cut(s) 127, 145, 407, 533
HpaII CCGG 2 cut(s) 176, 470
HphI GGTGA 3 cut(s) 395, 484, 706
Hpy166II GTNNAC 2 cut(s) 61, 411
Hpy188I TCNGA 3 cut(s) 132, 208, 397
Hpy188III TCNNGA 4 cut(s) 139, 404, 422, 539
Hpy8I GTNNAC 2 cut(s) 61, 411
Hpy99I CGWCG 9 cut(s) 277, 308, 311, 314, 317, 320, 323, 326, 329
HpyAV CCTTC 7 cut(s) 79, 374, 454, 595, 604, 631, 646
HpyCH4III ACNGT 2 cut(s) 389, 478
HpyCH4IV ACGT 1 cut(s) 134
HpyCH4V TGCA 2 cut(s) 335, 351
HpyF10VI GCNNNNNNNGC 1 cut(s) 164
HpyF3I CTNAG 1 cut(s) 792
HpySE526I ACGT 1 cut(s) 134
Hsp92II CATG 4 cut(s) 287, 335, 631, 773
HspAI GCGC 1 cut(s) 582
Kzo9I GATC 4 cut(s) 328, 400, 517, 541
LpnPI CCDG 7 cut(s) 106, 189, 237, 271, 353, 380, 483
Lsp1109I GCAGC 1 cut(s) 196
LweI GCATC 2 cut(s) 176, 344
MaeI CTAG 1 cut(s) 56
MaeII ACGT 1 cut(s) 134
MaeIII GTNAC 2 cut(s) 383, 472
MalI GATC 4 cut(s) 330, 402, 519, 543
MboI GATC 4 cut(s) 328, 400, 517, 541
MboII GAAGA 8 cut(s) 43, 154, 351, 464, 469, 539, 563, 605
MluCI AATT 3 cut(s) 21, 117, 491
MlyI GAGTC 3 cut(s) 136, 416, 542
MmeI TCCRAC 3 cut(s) 124, 186, 277
Mph1103I ATGCAT 1 cut(s) 337
MroXI GAANNNNTTC 1 cut(s) 718
MseI TTAA 1 cut(s) 483
MslI CAYNNNNRTG 1 cut(s) 340
MspI CCGG 2 cut(s) 176, 470
MspR9I CCNGG 1 cut(s) 368
MvaI CCWGG 1 cut(s) 368
MvnI CGCG 1 cut(s) 240
MwoI GCNNNNNNNGC 1 cut(s) 164
NdeII GATC 4 cut(s) 328, 400, 517, 541
NlaIII CATG 4 cut(s) 287, 335, 631, 773
NlaIV GGNNCC 1 cut(s) 256
NmuCI GTSAC 2 cut(s) 383, 472
NsiI ATGCAT 1 cut(s) 337
PcsI WCGNNNNNNNCGW 8 cut(s) 269, 285, 309, 312, 315, 318, 321, 324
PdmI GAANNNNTTC 1 cut(s) 718
PfeI GAWTC 1 cut(s) 145
PflFI GACNNNGTC 1 cut(s) 284
PfoI TCCNGGA 1 cut(s) 366
PkrI GCNGC 3 cut(s) 186, 232, 242
PleI GAGTC 3 cut(s) 135, 415, 541
PpsI GAGTC 3 cut(s) 135, 415, 541
Psp6I CCWGG 1 cut(s) 366
PspGI CCWGG 1 cut(s) 366
PspN4I GGNNCC 1 cut(s) 256
PspPI GGNCC 1 cut(s) 15
PstNI CAGNNNCTG 1 cut(s) 130
PsyI GACNNNGTC 1 cut(s) 284
RsaI GTAC 2 cut(s) 216, 262
RsaNI GTAC 2 cut(s) 215, 261
RseI CAYNNNNRTG 1 cut(s) 340
SaqAI TTAA 1 cut(s) 483
SatI GCNGC 3 cut(s) 185, 231, 241
Sau3AI GATC 4 cut(s) 328, 400, 517, 541
Sau96I GGNCC 1 cut(s) 15
SchI GAGTC 3 cut(s) 136, 416, 542
ScrFI CCNGG 1 cut(s) 368
SetI ASST 8 cut(s) 57, 71, 137, 256, 272, 385, 436, 510
SfaNI GCATC 2 cut(s) 176, 344
SmiMI CAYNNNNRTG 1 cut(s) 340
SmlI CTYRAG 1 cut(s) 404
SmoI CTYRAG 1 cut(s) 404
Sse9I AATT 3 cut(s) 21, 117, 491
SsiI CCGC 3 cut(s) 158, 230, 240
SspMI CTAG 1 cut(s) 56
StyD4I CCNGG 1 cut(s) 366
TaaI ACNGT 2 cut(s) 389, 478
TaiI ACGT 1 cut(s) 137
TaqI TCGA 8 cut(s) 48, 225, 272, 279, 288, 338, 549, 722
TasI AATT 3 cut(s) 21, 117, 491
TauI GCSGC 2 cut(s) 233, 243
TfiI GAWTC 1 cut(s) 145
Tru1I TTAA 1 cut(s) 483
Tru9I TTAA 1 cut(s) 483
TscAI CASTG 1 cut(s) 394
TseFI GTSAC 2 cut(s) 383, 472
TseI GCWGC 1 cut(s) 184
Tsp45I GTSAC 2 cut(s) 383, 472
TspDTI ATGAA 3 cut(s) 57, 123, 504
TspRI CASTG 1 cut(s) 394
Tth111I GACNNNGTC 1 cut(s) 284
XmnI GAANNNNTTC 1 cut(s) 718
XspI CTAG 1 cut(s) 56
Zsp2I ATGCAT 1 cut(s) 337
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.