RLG00000026736

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr6
OG0018081
Physical Location & Seq
Forward (+)
5417114 .. 5417899
786 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000026736

Sequence Viewer

Length: 786 bp
ATGAGGAACAAGAGGTCCTCAATTTTGCCGAAGAAACTCAATGAACTCGACCACCTAGTCAACAAGACCTTCTCTGTTCAACCCGATAACCCTAGTCTCCAACGCAATGAAGCAGAAATTGAGCAGAGTCTGACGTTCGTGAAGAATCTGCTGTCGGCGGAGATGGCATCACATCCGGCGAAGCAGTACTACTTGGAGAACATGTCGGAGAGAGTTCGAGAAATCGAGGCGGCGTTTCGCGGCTTTGGGGCAGGTTCCGGTACGACAACCTCGACGCTCGACCATGTCGATAATGTTGGTGATGACGATGACGACGATGATCATGCATCGAAGTGTTCTTGCAACAAGTCTCCTCTCCAGGACGAGGAGGAAGGTGACAATGTTTCAGATGATCTTGAGTCAACGCTTGGTCAAGATACAGGAGTTTGTGAGGATTTGGTTGAAGAGAAGAAGGCAATGCCGGTGACAGTGTTTAATAATGTCTTGTTTGAGGAGAAGGTTGATGATGGTCGGGTTGAAGATGAGTTTCTTGATCGGGTTGAAGATGTGTTTGATGATATGTCTCATAATGGCGCTTCTGCTGAAGATGTTAAGGAGGAGAAGGAGATTGGGGCTGACATGGATTTGAAGGAGAGTGAAAAGAAGGAAAATGGTTTAGGGTTTGGGAAGTTATGTGGAGCTGTGGTGAGTGGGTTTGTGATTGGAATGTTTTCGATGGCTTTGATGATGGAGAGCCTTCATTACGATGGCTATGAGGGACATGGACACTTTCTTACTCCTACTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

262

Amino Acids

28.94

Weight (kDa)

4.38

Isoelectric Point (pI)

50.94

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF7610 PF24583 9 - 80 1.3e-19 Domain of unknown function (DUF7610)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0018081)

Species Orthologous Gene IDs
fragaria_vesca FvH4_7g27590
malus_domestica MD07G1254300.v1.1
prunus_persica Prupe.2G277600_v2.0.a1
pyrus_communis pycom01g19370
rosa_laevigata RLG00000026736
rosa_roxburghii Rroxscaffold_4G00283470
rosa_rugosa Rorug01G0383200
rosa_samantha Rh1AG394100 Rh1BG358700 Rh1CG371700 Rh1DG389300

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 56
Acc36I ACCTGC 1 cut(s) 242
AccII CGCG 1 cut(s) 240
AciI CCGC 3 cut(s) 158, 230, 240
AcuI CTGAAG 1 cut(s) 603
AfaI GTAC 2 cut(s) 188, 262
AfiI CCNNNNNNNGG 1 cut(s) 364
AflIII ACRYGT 1 cut(s) 201
AgsI TTSAA 5 cut(s) 80, 443, 518, 542, 628
AjnI CCWGG 1 cut(s) 357
AloI GAACNNNNNNTCC 1 cut(s) 31
AluBI AGCT 1 cut(s) 680
AluI AGCT 1 cut(s) 680
Alw26I GTCTC 3 cut(s) 101, 354, 567
AlwNI CAGNNNCTG 1 cut(s) 130
Asp700I GAANNNNTTC 1 cut(s) 709
AspLEI GCGC 1 cut(s) 575
AspS9I GGNCC 1 cut(s) 15
AsuHPI GGTGA 4 cut(s) 311, 386, 475, 697
AvaII GGWCC 1 cut(s) 15
BaeI ACNNNNGTAYC 2 cut(s) 408, 441
BarI GAAGNNNNNNTAC 2 cut(s) 173, 205
BccI CCATC 5 cut(s) 157, 500, 709, 721, 740
BcgI CGANNNNNNTGC 2 cut(s) 305, 339
BciT130I CCWGG 1 cut(s) 359
BclI TGATCA 1 cut(s) 319
BcoDI GTCTC 3 cut(s) 101, 354, 567
BfaI CTAG 2 cut(s) 56, 93
BfoI RGCGCY 1 cut(s) 576
BfuAI ACCTGC 1 cut(s) 242
BisI GCNGC 2 cut(s) 231, 241
BlsI GCNGC 2 cut(s) 232, 242
BmcAI AGTACT 1 cut(s) 188
Bme1390I CCNGG 1 cut(s) 359
Bme18I GGWCC 1 cut(s) 15
BmgT120I GGNCC 1 cut(s) 15
BmiI GGNNCC 1 cut(s) 256
BmrFI CCNGG 1 cut(s) 359
BmsI GCATC 2 cut(s) 176, 335
BpmI CTGGAG 1 cut(s) 341
BpuEI CTTGAG 1 cut(s) 416
BsaWI WCCGGW 1 cut(s) 257
BsaXI ACNNNNNCTCC 4 cut(s) 188, 218, 669, 699
Bsc4I CCNNNNNNNGG 1 cut(s) 364
Bse118I RCCGGY 1 cut(s) 460
Bse3DI GCAATG 2 cut(s) 112, 462
BseBI CCWGG 1 cut(s) 359
BseGI GGATG 1 cut(s) 172
BseLI CCNNNNNNNGG 1 cut(s) 364
BseMI GCAATG 2 cut(s) 112, 462
BseRI GAGGAG 4 cut(s) 342, 380, 506, 611
Bsh1236I CGCG 1 cut(s) 240
BsiSI CCGG 3 cut(s) 176, 258, 461
BslFI GGGAC 1 cut(s) 771
BslI CCNNNNNNNGG 1 cut(s) 364
BsmAI GTCTC 3 cut(s) 101, 354, 567
BsmFI GGGAC 1 cut(s) 771
Bsp143I GATC 3 cut(s) 319, 391, 532
BspACI CCGC 3 cut(s) 158, 230, 240
BspFNI CGCG 1 cut(s) 240
BspLI GGNNCC 1 cut(s) 256
BspMI ACCTGC 1 cut(s) 242
BsrDI GCAATG 2 cut(s) 112, 462
BsrFI RCCGGY 1 cut(s) 460
BssAI RCCGGY 1 cut(s) 460
BssMI GATC 3 cut(s) 319, 391, 532
Bst2UI CCWGG 1 cut(s) 359
Bst4CI ACNGT 1 cut(s) 469
Bst6I CTCTTC 1 cut(s) 438
BstF5I GGATG 1 cut(s) 172
BstFNI CGCG 1 cut(s) 240
BstH2I RGCGCY 1 cut(s) 576
BstHHI GCGC 1 cut(s) 575
BstKTI GATC 3 cut(s) 322, 394, 535
BstMAI GTCTC 3 cut(s) 101, 354, 567
BstMBI GATC 3 cut(s) 319, 391, 532
BstMWI GCNNNNNNNGC 1 cut(s) 164
BstNI CCWGG 1 cut(s) 359
BstNSI RCATGY 1 cut(s) 205
BstSCI CCNGG 1 cut(s) 357
BstUI CGCG 1 cut(s) 240
BtsCI GGATG 1 cut(s) 172
BtsIMutI CAGTG 1 cut(s) 474
BveI ACCTGC 1 cut(s) 242
CaiI CAGNNNCTG 1 cut(s) 130
CfoI GCGC 1 cut(s) 575
Cfr10I RCCGGY 1 cut(s) 460
Cfr13I GGNCC 1 cut(s) 15
CseI GACGC 1 cut(s) 283
Csp6I GTAC 2 cut(s) 187, 261
CviAII CATG 5 cut(s) 202, 284, 323, 619, 761
CviJI RGCY 6 cut(s) 243, 614, 680, 719, 735, 750
CviKI_1 RGCY 6 cut(s) 243, 614, 680, 719, 735, 750
CviQI GTAC 2 cut(s) 187, 261
DpnI GATC 3 cut(s) 321, 393, 534
DpnII GATC 3 cut(s) 319, 391, 532
DrdI GACNNNNNNGTC 1 cut(s) 56
DseDI GACNNNNNNGTC 1 cut(s) 56
Eam1104I CTCTTC 1 cut(s) 438
EarI CTCTTC 1 cut(s) 438
EciI GGCGGA 1 cut(s) 173
Eco47I GGWCC 1 cut(s) 15
Eco57I CTGAAG 1 cut(s) 603
EcoO109I RGGNCCY 1 cut(s) 15
EcoRII CCWGG 1 cut(s) 357
EcoT22I ATGCAT 1 cut(s) 328
FaeI CATG 5 cut(s) 205, 287, 326, 622, 764
FaiI YATR 9 cut(s) 203, 285, 324, 560, 567, 620, 673, 753, 762
FaqI GGGAC 1 cut(s) 771
FatI CATG 5 cut(s) 201, 283, 322, 618, 760
FbaI TGATCA 1 cut(s) 319
Fnu4HI GCNGC 2 cut(s) 231, 241
FokI GGATG 1 cut(s) 159
Fsp4HI GCNGC 2 cut(s) 231, 241
FspBI CTAG 2 cut(s) 56, 93
GlaI GCGC 1 cut(s) 574
GluI GCNGC 2 cut(s) 231, 241
GsuI CTGGAG 1 cut(s) 341
HaeII RGCGCY 1 cut(s) 576
HapII CCGG 3 cut(s) 176, 258, 461
HgaI GACGC 1 cut(s) 283
HhaI GCGC 1 cut(s) 575
Hin1II CATG 5 cut(s) 205, 287, 326, 622, 764
Hin6I GCGC 1 cut(s) 573
HinP1I GCGC 1 cut(s) 573
HincII GTYRAC 2 cut(s) 61, 402
HindII GTYRAC 2 cut(s) 61, 402
HinfI GANTC 3 cut(s) 127, 145, 398
HpaII CCGG 3 cut(s) 176, 258, 461
HphI GGTGA 4 cut(s) 311, 386, 475, 697
Hpy166II GTNNAC 2 cut(s) 61, 402
Hpy188I TCNGA 3 cut(s) 132, 208, 388
Hpy188III TCNNGA 5 cut(s) 139, 218, 395, 413, 530
Hpy8I GTNNAC 2 cut(s) 61, 402
Hpy99I CGWCG 2 cut(s) 277, 317
HpyAV CCTTC 8 cut(s) 79, 365, 445, 490, 595, 622, 637, 746
HpyCH4III ACNGT 1 cut(s) 469
HpyCH4IV ACGT 1 cut(s) 134
HpyCH4V TGCA 2 cut(s) 326, 342
HpyF10VI GCNNNNNNNGC 1 cut(s) 164
HpySE526I ACGT 1 cut(s) 134
Hsp92II CATG 5 cut(s) 205, 287, 326, 622, 764
HspAI GCGC 1 cut(s) 573
Ksp22I TGATCA 1 cut(s) 319
Kzo9I GATC 3 cut(s) 319, 391, 532
LmnI GCTCC 1 cut(s) 677
LpnPI CCDG 7 cut(s) 189, 237, 271, 344, 371, 405, 474
LweI GCATC 2 cut(s) 176, 335
MaeI CTAG 2 cut(s) 56, 93
MaeII ACGT 1 cut(s) 134
MaeIII GTNAC 2 cut(s) 374, 463
MalI GATC 3 cut(s) 321, 393, 534
MboI GATC 3 cut(s) 319, 391, 532
MboII GAAGA 7 cut(s) 43, 154, 455, 460, 530, 554, 596
MluCI AATT 2 cut(s) 21, 117
MlyI GAGTC 2 cut(s) 136, 407
MmeI TCCRAC 2 cut(s) 124, 186
Mph1103I ATGCAT 1 cut(s) 328
MroXI GAANNNNTTC 1 cut(s) 709
MseI TTAA 3 cut(s) 474, 591, 784
MslI CAYNNNNRTG 2 cut(s) 331, 744
MspI CCGG 3 cut(s) 176, 258, 461
MspR9I CCNGG 1 cut(s) 359
MvaI CCWGG 1 cut(s) 359
MvnI CGCG 1 cut(s) 240
MwoI GCNNNNNNNGC 1 cut(s) 164
NdeII GATC 3 cut(s) 319, 391, 532
NlaIII CATG 5 cut(s) 205, 287, 326, 622, 764
NlaIV GGNNCC 1 cut(s) 256
NmuCI GTSAC 2 cut(s) 374, 463
NsiI ATGCAT 1 cut(s) 328
NspI RCATGY 1 cut(s) 205
PciI ACATGT 1 cut(s) 201
PcsI WCGNNNNNNNCGW 3 cut(s) 269, 285, 312
PdmI GAANNNNTTC 1 cut(s) 709
PfeI GAWTC 1 cut(s) 145
PflFI GACNNNGTC 1 cut(s) 284
PfoI TCCNGGA 1 cut(s) 357
PkrI GCNGC 2 cut(s) 232, 242
PleI GAGTC 2 cut(s) 135, 406
PpsI GAGTC 2 cut(s) 135, 406
PpuMI RGGWCCY 1 cut(s) 15
PscI ACATGT 1 cut(s) 201
Psp5II RGGWCCY 1 cut(s) 15
Psp6I CCWGG 1 cut(s) 357
PspGI CCWGG 1 cut(s) 357
PspN4I GGNNCC 1 cut(s) 256
PspPI GGNCC 1 cut(s) 15
PspPPI RGGWCCY 1 cut(s) 15
PstNI CAGNNNCTG 1 cut(s) 130
PsyI GACNNNGTC 1 cut(s) 284
RsaI GTAC 2 cut(s) 188, 262
RsaNI GTAC 2 cut(s) 187, 261
RseI CAYNNNNRTG 2 cut(s) 331, 744
SaqAI TTAA 3 cut(s) 474, 591, 784
SatI GCNGC 2 cut(s) 231, 241
Sau3AI GATC 3 cut(s) 319, 391, 532
Sau96I GGNCC 1 cut(s) 15
ScaI AGTACT 1 cut(s) 188
SchI GAGTC 2 cut(s) 136, 407
ScrFI CCNGG 1 cut(s) 359
SetI ASST 9 cut(s) 17, 57, 71, 137, 256, 272, 376, 501, 682
SfaNI GCATC 2 cut(s) 176, 335
SinI GGWCC 1 cut(s) 15
SmiMI CAYNNNNRTG 2 cut(s) 331, 744
SmlI CTYRAG 1 cut(s) 395
SmoI CTYRAG 1 cut(s) 395
Sse9I AATT 2 cut(s) 21, 117
SsiI CCGC 3 cut(s) 158, 230, 240
SspMI CTAG 2 cut(s) 56, 93
StyD4I CCNGG 1 cut(s) 357
TaaI ACNGT 1 cut(s) 469
TaiI ACGT 1 cut(s) 137
TaqI TCGA 8 cut(s) 48, 217, 225, 272, 279, 288, 329, 713
TasI AATT 2 cut(s) 21, 117
TatI WGTACW 1 cut(s) 186
TauI GCSGC 2 cut(s) 233, 243
TfiI GAWTC 1 cut(s) 145
Tru1I TTAA 3 cut(s) 474, 591, 784
Tru9I TTAA 3 cut(s) 474, 591, 784
TscAI CASTG 1 cut(s) 474
TseFI GTSAC 2 cut(s) 374, 463
Tsp45I GTSAC 2 cut(s) 374, 463
TspDTI ATGAA 3 cut(s) 57, 123, 728
TspRI CASTG 1 cut(s) 474
Tth111I GACNNNGTC 1 cut(s) 284
VpaK11BI GGWCC 1 cut(s) 15
XceI RCATGY 1 cut(s) 205
XmnI GAANNNNTTC 1 cut(s) 709
XspI CTAG 2 cut(s) 56, 93
ZrmI AGTACT 1 cut(s) 188
Zsp2I ATGCAT 1 cut(s) 328
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.