Prupe.2G313200_v2.0.a1

Tetratricopeptide repeat

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp02
Physical Location & Seq
Reverse (-)
29525974 .. 29529388
3415 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.2G313200.4

Sequence Viewer

Length: 1734 bp
ATGGCAGCTTCCCTTCTTCTCCCTTCTCCCTTTTTCAACAACTGCGGGATAAGCAAAGTGTGCTTACATCACATCCAGTCGGGCTATTTTCACAAAGGCCTCACTTTCTTCTCTGGCCGTCTCCCAAAAAAGAATTCCAGCATTTTCATGGTTCCTGTTAGAGCCTTTGCCCTCTGCTGCTATGCCTCCAGAACTTTTGCTTCTGTTGGCTCATTAGATACGGATGTGGCAGGCCGAGAAAGTCATGTTTCAAATTCAAATAACTTTCAGACCAGGTCAGTTACTTCTTTTCAGCATTCAAGTGACAAATTGGATGGGATGAAAGATTTTGAGAGAGAACTGCAAGAGTTATTTGATGAGGTCAAAATGATGATTATGATGGGGAACCAAAATGATGCCATAGACCTACTTCAAGCCAATTATGAGGCGGTGAAGGAAAGGATGAATGCCGGTGTTAGAGGCATTGAAGAAGCTGCTACCATTGACATCATAGCTCTAGGATACATGGCTATTGGTGACGTAAAATTTGTTAATGCCCTACTGGATATGTTGAATGAAGTTGTTGACAGTCTAAAGGATGATGAACCACTTCTGGATTCCGTTCTCGTGCATATGGGAAGTATGTATTCAACTTTGGGGAAGTTTGAGAAATCAATGTCTGCATATAGGAGGGCTATTGGTAACATGGAGAGCATTTATGGGAAAAATAGTGTCTTTCTTATCACACCAATTTTGGGCATGGCAAAAGTTCTCAGCTCCATTGGAAGAACTTCAAAAGCAGTAGAATTCTACCATCGTGCAATAAGTCTTCTAGAATCAAGTAGAGGTGCTGAAAGTGAGGATTTGGTCATACCTTTATTTGGTGTTGGCAGTCTTTTACTCAAAGAAGGAAAGCCTGTTGAGGCAGAAAGTCCTTTTCTAAGAATTTTTGACATTTACAAGAAGTTATACGGAGAGAATGATGGAAGAGTTGGATTGGCCATGTGTTCTCTGGCACACGTGAAGTGTGCAGTGGGAGATGCAAATGAAGCCATCTCTTTATATAGAAAAGCTCTCCAGGTCATCACAACTTCCAACTATATGGCTTTAGATGACAGCATAATGGAGAAGATGAGGATAGATTTGGCAGAGTTACTTCATGCTGTTGGAAGAGGGAAGGAAGGCCGAGAGCTACTGGAGCAATGTTTGATGATCACTGAGAAATATAAAGGTAAAGAGGACCCGAGCTCAGCAACACATCTTATTAATCTTGCAACGTCCCATTCGAGGTCGAAGAATTATGTGGAGGCTGAGCGCTTGCTGAGGACAAGTTTGGAGATCATGGGAAAGACAGTGGGGCCTGATGATCAATCCATCACATTCCCAATGCTGCACCTTGCCGTTACTCTCTACCATTTAAAGCGGGATGAAGAAGCTGAACAGCTTGCCCTGGAGGCTTTGCACATCCGTGAAAAAGCATTTGGAAAAGATTCCCTTCCTGTTGCGGAGGCTCTCGACTGTTTGGTGTCAATCCAAACTAGATTGAAGAAGGATGATGAAGAGTTGCTGGAGCAGCTAACGAGGGTTTTGAGCATCCAAGAGAGAGAGTTTGGCCCCGAGGGTGAGGAGGTTATGATAACCCTGAAAAAAGTTGTATTCTACTTAGACAAACTAGGGAGGAAAAACGAAATTTTCCCTTTGCAGAAAAGATTGTCTGCACTTGGAATGAAATTCAAGCAACGGATTCAACATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

578

Amino Acids

64.47

Weight (kDa)

6.07

Isoelectric Point (pI)

38.55

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 4 cut(s) 45, 428, 1402, 1484
AcoI YGGCCR 2 cut(s) 115, 978
AcsI RAATTY 7 cut(s) 133, 253, 524, 785, 924, 1668, 1709
AcvI CACGTG 1 cut(s) 1000
AfeI AGCGCT 1 cut(s) 1295
AfiI CCNNNNNNNGG 3 cut(s) 734, 860, 1266
AflIII ACRYGT 1 cut(s) 997
AjnI CCWGG 3 cut(s) 272, 1056, 1428
AjuI GAANNNNNNNTTGG 4 cut(s) 118, 150, 1443, 1475
AleI CACNNNNGTG 1 cut(s) 1446
Alw21I GWGCWC 1 cut(s) 1229
Alw26I GTCTC 1 cut(s) 125
Ama87I CYCGRG 2 cut(s) 1222, 1595
Aor51HI AGCGCT 1 cut(s) 1295
AoxI GGCC 7 cut(s) 97, 115, 232, 978, 1162, 1337, 1591
ApeKI GCWGC 5 cut(s) 5, 177, 473, 1369, 1552
ApoI RAATTY 7 cut(s) 133, 253, 524, 785, 924, 1668, 1709
ArsI GACNNNNNNTTYG 2 cut(s) 509, 541
AseI ATTAAT 1 cut(s) 1245
Asp700I GAANNNNTTC 3 cut(s) 588, 769, 1468
AspLEI GCGC 1 cut(s) 1296
AspS9I GGNCC 3 cut(s) 1219, 1337, 1592
AsuHPI GGTGA 3 cut(s) 442, 527, 1613
AvaI CYCGRG 2 cut(s) 1222, 1595
AvaII GGWCC 1 cut(s) 1219
BaeI ACNNNNGTAYC 2 cut(s) 210, 243
BalI TGGCCA 1 cut(s) 980
BanII GRGCYC 1 cut(s) 1229
BauI CACGAG 1 cut(s) 605
BbrPI CACGTG 1 cut(s) 1000
BbsI GAAGAC 1 cut(s) 800
Bbv12I GWGCWC 1 cut(s) 1229
BbvCI CCTCAGC 1 cut(s) 1301
BbvI GCAGC 5 cut(s) 17, 164, 460, 1356, 1564
BccI CCATC 6 cut(s) 308, 373, 801, 956, 1040, 1361
BceAI ACGGC 2 cut(s) 102, 1364
BciT130I CCWGG 3 cut(s) 274, 1058, 1430
BciVI GTATCC 1 cut(s) 494
BclI TGATCA 2 cut(s) 1191, 1345
BcoDI GTCTC 1 cut(s) 125
BfaI CTAG 4 cut(s) 497, 812, 1518, 1652
BfoI RGCGCY 1 cut(s) 1297
BfuI GTATCC 1 cut(s) 494
BglI GCCNNNNNGGC 1 cut(s) 1433
BisI GCNGC 5 cut(s) 6, 178, 474, 1370, 1553
BlpI GCTNAGC 2 cut(s) 1228, 1290
BlsI GCNGC 5 cut(s) 7, 179, 475, 1371, 1554
Bme1390I CCNGG 3 cut(s) 274, 1058, 1430
Bme18I GGWCC 1 cut(s) 1219
BmeT110I CYCGRG 2 cut(s) 1222, 1595
BmgT120I GGNCC 3 cut(s) 1219, 1337, 1592
BmiI GGNNCC 5 cut(s) 153, 386, 1221, 1338, 1594
BmrFI CCNGG 3 cut(s) 274, 1058, 1430
BmsI GCATC 3 cut(s) 385, 1009, 1581
BpiI GAAGAC 1 cut(s) 800
BpmI CTGGAG 5 cut(s) 172, 1040, 1196, 1451, 1568
Bpu10I CCTNAGC 1 cut(s) 1301
Bpu1102I GCTNAGC 2 cut(s) 1228, 1290
BsaAI YACGTR 1 cut(s) 1000
BsaJI CCNNGG 2 cut(s) 1428, 1596
Bsc4I CCNNNNNNNGG 3 cut(s) 734, 860, 1266
Bse118I RCCGGY 1 cut(s) 449
Bse1I ACTGG 3 cut(s) 76, 546, 1179
Bse3DI GCAATG 1 cut(s) 1187
BseBI CCWGG 3 cut(s) 274, 1058, 1430
BseDI CCNNGG 2 cut(s) 1428, 1596
BseLI CCNNNNNNNGG 3 cut(s) 734, 860, 1266
BseMI GCAATG 1 cut(s) 1187
BseMII CTCAG 5 cut(s) 766, 1188, 1242, 1281, 1292
BseNI ACTGG 3 cut(s) 76, 546, 1179
BseRI GAGGAG 1 cut(s) 1619
BseXI GCAGC 5 cut(s) 17, 164, 460, 1356, 1564
BsgI GTGCAG 3 cut(s) 1029, 1355, 1680
BshFI GGCC 7 cut(s) 99, 117, 234, 980, 1164, 1339, 1593
BsiHKAI GWGCWC 1 cut(s) 1229
BsiHKCI CYCGRG 2 cut(s) 1222, 1595
BsiSI CCGG 1 cut(s) 450
BslFI GGGAC 1 cut(s) 1243
BslI CCNNNNNNNGG 3 cut(s) 734, 860, 1266
BsmAI GTCTC 1 cut(s) 125
BsmBI CGTCTC 1 cut(s) 125
BsmFI GGGAC 1 cut(s) 1243
BsmI GAATGC 2 cut(s) 295, 451
BsnI GGCC 7 cut(s) 99, 117, 234, 980, 1164, 1339, 1593
BsoBI CYCGRG 2 cut(s) 1222, 1595
Bsp1286I GDGCHC 1 cut(s) 1229
Bsp143I GATC 3 cut(s) 1191, 1317, 1345
Bsp1720I GCTNAGC 2 cut(s) 1228, 1290
BspACI CCGC 4 cut(s) 45, 428, 1402, 1484
BspANI GGCC 7 cut(s) 99, 117, 234, 980, 1164, 1339, 1593
BspCNI CTCAG 5 cut(s) 765, 1189, 1241, 1282, 1293
BspLI GGNNCC 5 cut(s) 153, 386, 1221, 1338, 1594
BsrDI GCAATG 1 cut(s) 1187
BsrFI RCCGGY 1 cut(s) 449
BsrI ACTGG 3 cut(s) 76, 546, 1179
BssAI RCCGGY 1 cut(s) 449
BssECI CCNNGG 2 cut(s) 1428, 1596
BssMI GATC 3 cut(s) 1191, 1317, 1345
BssSI CACGAG 1 cut(s) 605
Bst2BI CACGAG 1 cut(s) 605
Bst2UI CCWGG 3 cut(s) 274, 1058, 1430
Bst4CI ACNGT 3 cut(s) 569, 1333, 1499
Bst6I CTCTTC 3 cut(s) 961, 1144, 1533
BstAPI GCANNNNNTGC 1 cut(s) 60
BstBAI YACGTR 1 cut(s) 1000
BstC8I GCNNGC 3 cut(s) 232, 1298, 1425
BstDEI CTNAG 7 cut(s) 752, 920, 1197, 1228, 1290, 1301, 1642
BstH2I RGCGCY 1 cut(s) 1297
BstHHI GCGC 1 cut(s) 1296
BstKTI GATC 3 cut(s) 1194, 1320, 1348
BstMAI GTCTC 1 cut(s) 125
BstMBI GATC 3 cut(s) 1191, 1317, 1345
BstMWI GCNNNNNNNGC 6 cut(s) 51, 60, 1028, 1177, 1433, 1552
BstNI CCWGG 3 cut(s) 274, 1058, 1430
BstSCI CCNGG 3 cut(s) 272, 1056, 1428
BstV1I GCAGC 5 cut(s) 17, 164, 460, 1356, 1564
BstV2I GAAGAC 1 cut(s) 800
BstXI CCANNNNNNTGG 1 cut(s) 1081
BsuI GTATCC 1 cut(s) 494
BsuRI GGCC 7 cut(s) 99, 117, 234, 980, 1164, 1339, 1593
BtsI GCAGTG 1 cut(s) 1017
BtsIMutI CAGTG 3 cut(s) 1017, 1194, 1338
Cac8I GCNNGC 3 cut(s) 232, 1298, 1425
CfoI GCGC 1 cut(s) 1296
Cfr10I RCCGGY 1 cut(s) 449
Cfr13I GGNCC 3 cut(s) 1219, 1337, 1592
CsiI ACCWGGT 1 cut(s) 272
CviAII CATG 8 cut(s) 148, 245, 505, 685, 739, 982, 1139, 1321
DdeI CTNAG 7 cut(s) 752, 920, 1197, 1228, 1290, 1301, 1642
DpnI GATC 3 cut(s) 1193, 1319, 1347
DpnII GATC 3 cut(s) 1191, 1317, 1345
DraI TTTAAA 1 cut(s) 1398
EaeI YGGCCR 2 cut(s) 115, 978
Eam1104I CTCTTC 3 cut(s) 961, 1144, 1533
EarI CTCTTC 3 cut(s) 961, 1144, 1533
Ecl136II GAGCTC 1 cut(s) 1227
Eco147I AGGCCT 1 cut(s) 99
Eco24I GRGCYC 1 cut(s) 1229
Eco47I GGWCC 1 cut(s) 1219
Eco47III AGCGCT 1 cut(s) 1295
Eco53kI GAGCTC 1 cut(s) 1227
Eco72I CACGTG 1 cut(s) 1000
Eco88I CYCGRG 2 cut(s) 1222, 1595
EcoICRI GAGCTC 1 cut(s) 1227
EcoO109I RGGNCCY 2 cut(s) 1219, 1337
EcoRI GAATTC 2 cut(s) 133, 785
EcoRII CCWGG 3 cut(s) 272, 1056, 1428
EcoT38I GRGCYC 1 cut(s) 1229
Esp3I CGTCTC 1 cut(s) 125
FaeI CATG 8 cut(s) 151, 248, 508, 688, 742, 985, 1142, 1324
FalI AAGNNNNNCTT 2 cut(s) 1458, 1490
FaqI GGGAC 1 cut(s) 1243
FatI CATG 8 cut(s) 147, 244, 504, 684, 738, 981, 1138, 1320
FauI CCCGC 2 cut(s) 38, 1395
FauNDI CATATG 1 cut(s) 612
FbaI TGATCA 2 cut(s) 1191, 1345
Fnu4HI GCNGC 5 cut(s) 6, 178, 474, 1370, 1553
FriOI GRGCYC 1 cut(s) 1229
Fsp4HI GCNGC 5 cut(s) 6, 178, 474, 1370, 1553
FspBI CTAG 4 cut(s) 497, 812, 1518, 1652
GlaI GCGC 1 cut(s) 1295
GluI GCNGC 5 cut(s) 6, 178, 474, 1370, 1553
GsuI CTGGAG 5 cut(s) 172, 1040, 1196, 1451, 1568
HaeII RGCGCY 1 cut(s) 1297
HaeIII GGCC 7 cut(s) 99, 117, 234, 980, 1164, 1339, 1593
HapII CCGG 1 cut(s) 450
HhaI GCGC 1 cut(s) 1296
Hin1II CATG 8 cut(s) 151, 248, 508, 688, 742, 985, 1142, 1324
Hin6I GCGC 1 cut(s) 1294
HinP1I GCGC 1 cut(s) 1294
HincII GTYRAC 1 cut(s) 565
HindII GTYRAC 1 cut(s) 565
HinfI GANTC 4 cut(s) 596, 815, 1469, 1723
HpaII CCGG 1 cut(s) 450
HphI GGTGA 3 cut(s) 442, 527, 1613
Hpy166II GTNNAC 1 cut(s) 565
Hpy188I TCNGA 1 cut(s) 270
Hpy188III TCNNGA 4 cut(s) 189, 593, 812, 1493
Hpy8I GTNNAC 1 cut(s) 565
HpyAV CCTTC 8 cut(s) 23, 33, 427, 881, 1150, 1154, 1484, 1522
HpyCH4III ACNGT 3 cut(s) 569, 1333, 1499
HpyCH4IV ACGT 3 cut(s) 519, 999, 1256
HpyF10VI GCNNNNNNNGC 6 cut(s) 51, 60, 1028, 1177, 1433, 1552
HpyF3I CTNAG 7 cut(s) 752, 920, 1197, 1228, 1290, 1301, 1642
HpySE526I ACGT 3 cut(s) 519, 999, 1256
Hsp92II CATG 8 cut(s) 151, 248, 508, 688, 742, 985, 1142, 1324
HspAI GCGC 1 cut(s) 1294
Ksp22I TGATCA 2 cut(s) 1191, 1345
Kzo9I GATC 3 cut(s) 1191, 1317, 1345
LmnI GCTCC 3 cut(s) 761, 1177, 1549
Lsp1109I GCAGC 5 cut(s) 17, 164, 460, 1356, 1564
LweI GCATC 3 cut(s) 385, 1009, 1581
MabI ACCWGGT 1 cut(s) 272
MaeI CTAG 4 cut(s) 497, 812, 1518, 1652
MaeII ACGT 3 cut(s) 519, 999, 1256
MaeIII GTNAC 6 cut(s) 280, 302, 515, 680, 1131, 1381
MalI GATC 3 cut(s) 1193, 1319, 1347
MboI GATC 3 cut(s) 1191, 1317, 1345
MhlI GDGCHC 1 cut(s) 1229
MlsI TGGCCA 1 cut(s) 980
MluNI TGGCCA 1 cut(s) 980
MmeI TCCRAC 3 cut(s) 952, 1098, 1126
Mox20I TGGCCA 1 cut(s) 980
MroXI GAANNNNTTC 3 cut(s) 588, 769, 1468
MscI TGGCCA 1 cut(s) 980
MseI TTAA 4 cut(s) 531, 1245, 1397, 1732
MslI CAYNNNNRTG 3 cut(s) 146, 300, 1446
Msp20I TGGCCA 1 cut(s) 980
MspI CCGG 1 cut(s) 450
MspR9I CCNGG 3 cut(s) 274, 1058, 1430
Mva1269I GAATGC 2 cut(s) 295, 451
MvaI CCWGG 3 cut(s) 274, 1058, 1430
MwoI GCNNNNNNNGC 6 cut(s) 51, 60, 1028, 1177, 1433, 1552
NdeI CATATG 1 cut(s) 612
NdeII GATC 3 cut(s) 1191, 1317, 1345
NlaIII CATG 8 cut(s) 151, 248, 508, 688, 742, 985, 1142, 1324
NlaIV GGNNCC 5 cut(s) 153, 386, 1221, 1338, 1594
NmeAIII GCCGAG 2 cut(s) 260, 1190
NmuCI GTSAC 2 cut(s) 302, 515
OliI CACNNNNGTG 1 cut(s) 1446
PceI AGGCCT 1 cut(s) 99
PcsI WCGNNNNNNNCGW 1 cut(s) 1262
PctI GAATGC 2 cut(s) 295, 451
PdmI GAANNNNTTC 3 cut(s) 588, 769, 1468
PfeI GAWTC 4 cut(s) 596, 815, 1469, 1723
PflFI GACNNNGTC 1 cut(s) 274
PkrI GCNGC 5 cut(s) 7, 179, 475, 1371, 1554
PmaCI CACGTG 1 cut(s) 1000
PmlI CACGTG 1 cut(s) 1000
Ppu21I YACGTR 1 cut(s) 1000
PpuMI RGGWCCY 1 cut(s) 1219
PshBI ATTAAT 1 cut(s) 1245
Psp124BI GAGCTC 1 cut(s) 1229
Psp5II RGGWCCY 1 cut(s) 1219
Psp6I CCWGG 3 cut(s) 272, 1056, 1428
PspCI CACGTG 1 cut(s) 1000
PspGI CCWGG 3 cut(s) 272, 1056, 1428
PspN4I GGNNCC 5 cut(s) 153, 386, 1221, 1338, 1594
PspPI GGNCC 3 cut(s) 1219, 1337, 1592
PspPPI RGGWCCY 1 cut(s) 1219
PsyI GACNNNGTC 1 cut(s) 274
RseI CAYNNNNRTG 3 cut(s) 146, 300, 1446
SacI GAGCTC 1 cut(s) 1229
SaqAI TTAA 4 cut(s) 531, 1245, 1397, 1732
SatI GCNGC 5 cut(s) 6, 178, 474, 1370, 1553
Sau3AI GATC 3 cut(s) 1191, 1317, 1345
Sau96I GGNCC 3 cut(s) 1219, 1337, 1592
ScrFI CCNGG 3 cut(s) 274, 1058, 1430
SduI GDGCHC 1 cut(s) 1229
SexAI ACCWGGT 1 cut(s) 272
SfaNI GCATC 3 cut(s) 385, 1009, 1581
SinI GGWCC 1 cut(s) 1219
SmiMI CAYNNNNRTG 3 cut(s) 146, 300, 1446
SseBI AGGCCT 1 cut(s) 99
SsiI CCGC 4 cut(s) 45, 428, 1402, 1484
SspMI CTAG 4 cut(s) 497, 812, 1518, 1652
SstI GAGCTC 1 cut(s) 1229
StuI AGGCCT 1 cut(s) 99
StyD4I CCNGG 3 cut(s) 272, 1056, 1428
TaaI ACNGT 3 cut(s) 569, 1333, 1499
TaiI ACGT 3 cut(s) 522, 1002, 1259
TaqI TCGA 3 cut(s) 1265, 1271, 1494
TfiI GAWTC 4 cut(s) 596, 815, 1469, 1723
Tru1I TTAA 4 cut(s) 531, 1245, 1397, 1732
Tru9I TTAA 4 cut(s) 531, 1245, 1397, 1732
TscAI CASTG 3 cut(s) 1017, 1201, 1338
TseFI GTSAC 2 cut(s) 302, 515
TseI GCWGC 5 cut(s) 5, 177, 473, 1369, 1552
Tsp45I GTSAC 2 cut(s) 302, 515
TspGWI ACGGA 4 cut(s) 236, 589, 966, 1436
TspRI CASTG 3 cut(s) 1017, 1201, 1338
Tth111I GACNNNGTC 1 cut(s) 274
VpaK11BI GGWCC 1 cut(s) 1219
VspI ATTAAT 1 cut(s) 1245
XapI RAATTY 7 cut(s) 133, 253, 524, 785, 924, 1668, 1709
XbaI TCTAGA 1 cut(s) 811
XcmI CCANNNNNNNNNTGG 2 cut(s) 145, 988
XmnI GAANNNNTTC 3 cut(s) 588, 769, 1468
XspI CTAG 4 cut(s) 497, 812, 1518, 1652
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.