Tetratricopeptide repeat
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT5G53080 |
| fragaria_vesca | FvH4_7g31990 |
| malus_domestica | MD01G1222800.v1.1 |
| prunus_persica | Prupe.2G313200_v2.0.a1 Prupe.2G313200_v2.0.a1 Prupe.2G313200_v2.0.a1 Prupe.2G313200_v2.0.a1 Prupe.2G313200_v2.0.a1 Prupe.2G313200_v2.0.a1 Prupe.2G313200_v2.0.a1 |
| pyrus_communis | pycom01g23220 pycom07g26620 |
| rosa_chinensis | RchiOBHm_Chr1g0381501 |
| rosa_laevigata | RLG00000026227 |
| rosa_multiflora | Rmu_sc0003688.1_g000009 |
| rosa_roxburghii | Rroxscaffold_4G00278610 |
| rosa_rugosa | Rorug01G0429000 |
| rosa_samantha | Rh1AG452200 Rh1BG409500 Rh1CG424000 Rh1DG440800 |
| rosa_wichuraiana | Rw1G039480 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AciI | CCGC | 4 cut(s) | 45, 428, 1402, 1484 |
| AcoI | YGGCCR | 2 cut(s) | 115, 978 |
| AcsI | RAATTY | 7 cut(s) | 133, 253, 524, 785, 924, 1668, 1709 |
| AcvI | CACGTG | 1 cut(s) | 1000 |
| AfeI | AGCGCT | 1 cut(s) | 1295 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 734, 860, 1266 |
| AflIII | ACRYGT | 1 cut(s) | 997 |
| AjnI | CCWGG | 3 cut(s) | 272, 1056, 1428 |
| AjuI | GAANNNNNNNTTGG | 4 cut(s) | 118, 150, 1443, 1475 |
| AleI | CACNNNNGTG | 1 cut(s) | 1446 |
| Alw21I | GWGCWC | 1 cut(s) | 1229 |
| Alw26I | GTCTC | 1 cut(s) | 125 |
| Ama87I | CYCGRG | 2 cut(s) | 1222, 1595 |
| Aor51HI | AGCGCT | 1 cut(s) | 1295 |
| AoxI | GGCC | 7 cut(s) | 97, 115, 232, 978, 1162, 1337, 1591 |
| ApeKI | GCWGC | 5 cut(s) | 5, 177, 473, 1369, 1552 |
| ApoI | RAATTY | 7 cut(s) | 133, 253, 524, 785, 924, 1668, 1709 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 509, 541 |
| AseI | ATTAAT | 1 cut(s) | 1245 |
| Asp700I | GAANNNNTTC | 3 cut(s) | 588, 769, 1468 |
| AspLEI | GCGC | 1 cut(s) | 1296 |
| AspS9I | GGNCC | 3 cut(s) | 1219, 1337, 1592 |
| AsuHPI | GGTGA | 3 cut(s) | 442, 527, 1613 |
| AvaI | CYCGRG | 2 cut(s) | 1222, 1595 |
| AvaII | GGWCC | 1 cut(s) | 1219 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 210, 243 |
| BalI | TGGCCA | 1 cut(s) | 980 |
| BanII | GRGCYC | 1 cut(s) | 1229 |
| BauI | CACGAG | 1 cut(s) | 605 |
| BbrPI | CACGTG | 1 cut(s) | 1000 |
| BbsI | GAAGAC | 1 cut(s) | 800 |
| Bbv12I | GWGCWC | 1 cut(s) | 1229 |
| BbvCI | CCTCAGC | 1 cut(s) | 1301 |
| BbvI | GCAGC | 5 cut(s) | 17, 164, 460, 1356, 1564 |
| BccI | CCATC | 6 cut(s) | 308, 373, 801, 956, 1040, 1361 |
| BceAI | ACGGC | 2 cut(s) | 102, 1364 |
| BciT130I | CCWGG | 3 cut(s) | 274, 1058, 1430 |
| BciVI | GTATCC | 1 cut(s) | 494 |
| BclI | TGATCA | 2 cut(s) | 1191, 1345 |
| BcoDI | GTCTC | 1 cut(s) | 125 |
| BfaI | CTAG | 4 cut(s) | 497, 812, 1518, 1652 |
| BfoI | RGCGCY | 1 cut(s) | 1297 |
| BfuI | GTATCC | 1 cut(s) | 494 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 1433 |
| BisI | GCNGC | 5 cut(s) | 6, 178, 474, 1370, 1553 |
| BlpI | GCTNAGC | 2 cut(s) | 1228, 1290 |
| BlsI | GCNGC | 5 cut(s) | 7, 179, 475, 1371, 1554 |
| Bme1390I | CCNGG | 3 cut(s) | 274, 1058, 1430 |
| Bme18I | GGWCC | 1 cut(s) | 1219 |
| BmeT110I | CYCGRG | 2 cut(s) | 1222, 1595 |
| BmgT120I | GGNCC | 3 cut(s) | 1219, 1337, 1592 |
| BmiI | GGNNCC | 5 cut(s) | 153, 386, 1221, 1338, 1594 |
| BmrFI | CCNGG | 3 cut(s) | 274, 1058, 1430 |
| BmsI | GCATC | 3 cut(s) | 385, 1009, 1581 |
| BpiI | GAAGAC | 1 cut(s) | 800 |
| BpmI | CTGGAG | 5 cut(s) | 172, 1040, 1196, 1451, 1568 |
| Bpu10I | CCTNAGC | 1 cut(s) | 1301 |
| Bpu1102I | GCTNAGC | 2 cut(s) | 1228, 1290 |
| BsaAI | YACGTR | 1 cut(s) | 1000 |
| BsaJI | CCNNGG | 2 cut(s) | 1428, 1596 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 734, 860, 1266 |
| Bse118I | RCCGGY | 1 cut(s) | 449 |
| Bse1I | ACTGG | 3 cut(s) | 76, 546, 1179 |
| Bse3DI | GCAATG | 1 cut(s) | 1187 |
| BseBI | CCWGG | 3 cut(s) | 274, 1058, 1430 |
| BseDI | CCNNGG | 2 cut(s) | 1428, 1596 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 734, 860, 1266 |
| BseMI | GCAATG | 1 cut(s) | 1187 |
| BseMII | CTCAG | 5 cut(s) | 766, 1188, 1242, 1281, 1292 |
| BseNI | ACTGG | 3 cut(s) | 76, 546, 1179 |
| BseRI | GAGGAG | 1 cut(s) | 1619 |
| BseXI | GCAGC | 5 cut(s) | 17, 164, 460, 1356, 1564 |
| BsgI | GTGCAG | 3 cut(s) | 1029, 1355, 1680 |
| BshFI | GGCC | 7 cut(s) | 99, 117, 234, 980, 1164, 1339, 1593 |
| BsiHKAI | GWGCWC | 1 cut(s) | 1229 |
| BsiHKCI | CYCGRG | 2 cut(s) | 1222, 1595 |
| BsiSI | CCGG | 1 cut(s) | 450 |
| BslFI | GGGAC | 1 cut(s) | 1243 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 734, 860, 1266 |
| BsmAI | GTCTC | 1 cut(s) | 125 |
| BsmBI | CGTCTC | 1 cut(s) | 125 |
| BsmFI | GGGAC | 1 cut(s) | 1243 |
| BsmI | GAATGC | 2 cut(s) | 295, 451 |
| BsnI | GGCC | 7 cut(s) | 99, 117, 234, 980, 1164, 1339, 1593 |
| BsoBI | CYCGRG | 2 cut(s) | 1222, 1595 |
| Bsp1286I | GDGCHC | 1 cut(s) | 1229 |
| Bsp143I | GATC | 3 cut(s) | 1191, 1317, 1345 |
| Bsp1720I | GCTNAGC | 2 cut(s) | 1228, 1290 |
| BspACI | CCGC | 4 cut(s) | 45, 428, 1402, 1484 |
| BspANI | GGCC | 7 cut(s) | 99, 117, 234, 980, 1164, 1339, 1593 |
| BspCNI | CTCAG | 5 cut(s) | 765, 1189, 1241, 1282, 1293 |
| BspLI | GGNNCC | 5 cut(s) | 153, 386, 1221, 1338, 1594 |
| BsrDI | GCAATG | 1 cut(s) | 1187 |
| BsrFI | RCCGGY | 1 cut(s) | 449 |
| BsrI | ACTGG | 3 cut(s) | 76, 546, 1179 |
| BssAI | RCCGGY | 1 cut(s) | 449 |
| BssECI | CCNNGG | 2 cut(s) | 1428, 1596 |
| BssMI | GATC | 3 cut(s) | 1191, 1317, 1345 |
| BssSI | CACGAG | 1 cut(s) | 605 |
| Bst2BI | CACGAG | 1 cut(s) | 605 |
| Bst2UI | CCWGG | 3 cut(s) | 274, 1058, 1430 |
| Bst4CI | ACNGT | 3 cut(s) | 569, 1333, 1499 |
| Bst6I | CTCTTC | 3 cut(s) | 961, 1144, 1533 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 60 |
| BstBAI | YACGTR | 1 cut(s) | 1000 |
| BstC8I | GCNNGC | 3 cut(s) | 232, 1298, 1425 |
| BstDEI | CTNAG | 7 cut(s) | 752, 920, 1197, 1228, 1290, 1301, 1642 |
| BstH2I | RGCGCY | 1 cut(s) | 1297 |
| BstHHI | GCGC | 1 cut(s) | 1296 |
| BstKTI | GATC | 3 cut(s) | 1194, 1320, 1348 |
| BstMAI | GTCTC | 1 cut(s) | 125 |
| BstMBI | GATC | 3 cut(s) | 1191, 1317, 1345 |
| BstMWI | GCNNNNNNNGC | 6 cut(s) | 51, 60, 1028, 1177, 1433, 1552 |
| BstNI | CCWGG | 3 cut(s) | 274, 1058, 1430 |
| BstSCI | CCNGG | 3 cut(s) | 272, 1056, 1428 |
| BstV1I | GCAGC | 5 cut(s) | 17, 164, 460, 1356, 1564 |
| BstV2I | GAAGAC | 1 cut(s) | 800 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 1081 |
| BsuI | GTATCC | 1 cut(s) | 494 |
| BsuRI | GGCC | 7 cut(s) | 99, 117, 234, 980, 1164, 1339, 1593 |
| BtsI | GCAGTG | 1 cut(s) | 1017 |
| BtsIMutI | CAGTG | 3 cut(s) | 1017, 1194, 1338 |
| Cac8I | GCNNGC | 3 cut(s) | 232, 1298, 1425 |
| CfoI | GCGC | 1 cut(s) | 1296 |
| Cfr10I | RCCGGY | 1 cut(s) | 449 |
| Cfr13I | GGNCC | 3 cut(s) | 1219, 1337, 1592 |
| CsiI | ACCWGGT | 1 cut(s) | 272 |
| CviAII | CATG | 8 cut(s) | 148, 245, 505, 685, 739, 982, 1139, 1321 |
| DdeI | CTNAG | 7 cut(s) | 752, 920, 1197, 1228, 1290, 1301, 1642 |
| DpnI | GATC | 3 cut(s) | 1193, 1319, 1347 |
| DpnII | GATC | 3 cut(s) | 1191, 1317, 1345 |
| DraI | TTTAAA | 1 cut(s) | 1398 |
| EaeI | YGGCCR | 2 cut(s) | 115, 978 |
| Eam1104I | CTCTTC | 3 cut(s) | 961, 1144, 1533 |
| EarI | CTCTTC | 3 cut(s) | 961, 1144, 1533 |
| Ecl136II | GAGCTC | 1 cut(s) | 1227 |
| Eco147I | AGGCCT | 1 cut(s) | 99 |
| Eco24I | GRGCYC | 1 cut(s) | 1229 |
| Eco47I | GGWCC | 1 cut(s) | 1219 |
| Eco47III | AGCGCT | 1 cut(s) | 1295 |
| Eco53kI | GAGCTC | 1 cut(s) | 1227 |
| Eco72I | CACGTG | 1 cut(s) | 1000 |
| Eco88I | CYCGRG | 2 cut(s) | 1222, 1595 |
| EcoICRI | GAGCTC | 1 cut(s) | 1227 |
| EcoO109I | RGGNCCY | 2 cut(s) | 1219, 1337 |
| EcoRI | GAATTC | 2 cut(s) | 133, 785 |
| EcoRII | CCWGG | 3 cut(s) | 272, 1056, 1428 |
| EcoT38I | GRGCYC | 1 cut(s) | 1229 |
| Esp3I | CGTCTC | 1 cut(s) | 125 |
| FaeI | CATG | 8 cut(s) | 151, 248, 508, 688, 742, 985, 1142, 1324 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 1458, 1490 |
| FaqI | GGGAC | 1 cut(s) | 1243 |
| FatI | CATG | 8 cut(s) | 147, 244, 504, 684, 738, 981, 1138, 1320 |
| FauI | CCCGC | 2 cut(s) | 38, 1395 |
| FauNDI | CATATG | 1 cut(s) | 612 |
| FbaI | TGATCA | 2 cut(s) | 1191, 1345 |
| Fnu4HI | GCNGC | 5 cut(s) | 6, 178, 474, 1370, 1553 |
| FriOI | GRGCYC | 1 cut(s) | 1229 |
| Fsp4HI | GCNGC | 5 cut(s) | 6, 178, 474, 1370, 1553 |
| FspBI | CTAG | 4 cut(s) | 497, 812, 1518, 1652 |
| GlaI | GCGC | 1 cut(s) | 1295 |
| GluI | GCNGC | 5 cut(s) | 6, 178, 474, 1370, 1553 |
| GsuI | CTGGAG | 5 cut(s) | 172, 1040, 1196, 1451, 1568 |
| HaeII | RGCGCY | 1 cut(s) | 1297 |
| HaeIII | GGCC | 7 cut(s) | 99, 117, 234, 980, 1164, 1339, 1593 |
| HapII | CCGG | 1 cut(s) | 450 |
| HhaI | GCGC | 1 cut(s) | 1296 |
| Hin1II | CATG | 8 cut(s) | 151, 248, 508, 688, 742, 985, 1142, 1324 |
| Hin6I | GCGC | 1 cut(s) | 1294 |
| HinP1I | GCGC | 1 cut(s) | 1294 |
| HincII | GTYRAC | 1 cut(s) | 565 |
| HindII | GTYRAC | 1 cut(s) | 565 |
| HinfI | GANTC | 4 cut(s) | 596, 815, 1469, 1723 |
| HpaII | CCGG | 1 cut(s) | 450 |
| HphI | GGTGA | 3 cut(s) | 442, 527, 1613 |
| Hpy166II | GTNNAC | 1 cut(s) | 565 |
| Hpy188I | TCNGA | 1 cut(s) | 270 |
| Hpy188III | TCNNGA | 4 cut(s) | 189, 593, 812, 1493 |
| Hpy8I | GTNNAC | 1 cut(s) | 565 |
| HpyAV | CCTTC | 8 cut(s) | 23, 33, 427, 881, 1150, 1154, 1484, 1522 |
| HpyCH4III | ACNGT | 3 cut(s) | 569, 1333, 1499 |
| HpyCH4IV | ACGT | 3 cut(s) | 519, 999, 1256 |
| HpyF10VI | GCNNNNNNNGC | 6 cut(s) | 51, 60, 1028, 1177, 1433, 1552 |
| HpyF3I | CTNAG | 7 cut(s) | 752, 920, 1197, 1228, 1290, 1301, 1642 |
| HpySE526I | ACGT | 3 cut(s) | 519, 999, 1256 |
| Hsp92II | CATG | 8 cut(s) | 151, 248, 508, 688, 742, 985, 1142, 1324 |
| HspAI | GCGC | 1 cut(s) | 1294 |
| Ksp22I | TGATCA | 2 cut(s) | 1191, 1345 |
| Kzo9I | GATC | 3 cut(s) | 1191, 1317, 1345 |
| LmnI | GCTCC | 3 cut(s) | 761, 1177, 1549 |
| Lsp1109I | GCAGC | 5 cut(s) | 17, 164, 460, 1356, 1564 |
| LweI | GCATC | 3 cut(s) | 385, 1009, 1581 |
| MabI | ACCWGGT | 1 cut(s) | 272 |
| MaeI | CTAG | 4 cut(s) | 497, 812, 1518, 1652 |
| MaeII | ACGT | 3 cut(s) | 519, 999, 1256 |
| MaeIII | GTNAC | 6 cut(s) | 280, 302, 515, 680, 1131, 1381 |
| MalI | GATC | 3 cut(s) | 1193, 1319, 1347 |
| MboI | GATC | 3 cut(s) | 1191, 1317, 1345 |
| MhlI | GDGCHC | 1 cut(s) | 1229 |
| MlsI | TGGCCA | 1 cut(s) | 980 |
| MluNI | TGGCCA | 1 cut(s) | 980 |
| MmeI | TCCRAC | 3 cut(s) | 952, 1098, 1126 |
| Mox20I | TGGCCA | 1 cut(s) | 980 |
| MroXI | GAANNNNTTC | 3 cut(s) | 588, 769, 1468 |
| MscI | TGGCCA | 1 cut(s) | 980 |
| MseI | TTAA | 4 cut(s) | 531, 1245, 1397, 1732 |
| MslI | CAYNNNNRTG | 3 cut(s) | 146, 300, 1446 |
| Msp20I | TGGCCA | 1 cut(s) | 980 |
| MspI | CCGG | 1 cut(s) | 450 |
| MspR9I | CCNGG | 3 cut(s) | 274, 1058, 1430 |
| Mva1269I | GAATGC | 2 cut(s) | 295, 451 |
| MvaI | CCWGG | 3 cut(s) | 274, 1058, 1430 |
| MwoI | GCNNNNNNNGC | 6 cut(s) | 51, 60, 1028, 1177, 1433, 1552 |
| NdeI | CATATG | 1 cut(s) | 612 |
| NdeII | GATC | 3 cut(s) | 1191, 1317, 1345 |
| NlaIII | CATG | 8 cut(s) | 151, 248, 508, 688, 742, 985, 1142, 1324 |
| NlaIV | GGNNCC | 5 cut(s) | 153, 386, 1221, 1338, 1594 |
| NmeAIII | GCCGAG | 2 cut(s) | 260, 1190 |
| NmuCI | GTSAC | 2 cut(s) | 302, 515 |
| OliI | CACNNNNGTG | 1 cut(s) | 1446 |
| PceI | AGGCCT | 1 cut(s) | 99 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 1262 |
| PctI | GAATGC | 2 cut(s) | 295, 451 |
| PdmI | GAANNNNTTC | 3 cut(s) | 588, 769, 1468 |
| PfeI | GAWTC | 4 cut(s) | 596, 815, 1469, 1723 |
| PflFI | GACNNNGTC | 1 cut(s) | 274 |
| PkrI | GCNGC | 5 cut(s) | 7, 179, 475, 1371, 1554 |
| PmaCI | CACGTG | 1 cut(s) | 1000 |
| PmlI | CACGTG | 1 cut(s) | 1000 |
| Ppu21I | YACGTR | 1 cut(s) | 1000 |
| PpuMI | RGGWCCY | 1 cut(s) | 1219 |
| PshBI | ATTAAT | 1 cut(s) | 1245 |
| Psp124BI | GAGCTC | 1 cut(s) | 1229 |
| Psp5II | RGGWCCY | 1 cut(s) | 1219 |
| Psp6I | CCWGG | 3 cut(s) | 272, 1056, 1428 |
| PspCI | CACGTG | 1 cut(s) | 1000 |
| PspGI | CCWGG | 3 cut(s) | 272, 1056, 1428 |
| PspN4I | GGNNCC | 5 cut(s) | 153, 386, 1221, 1338, 1594 |
| PspPI | GGNCC | 3 cut(s) | 1219, 1337, 1592 |
| PspPPI | RGGWCCY | 1 cut(s) | 1219 |
| PsyI | GACNNNGTC | 1 cut(s) | 274 |
| RseI | CAYNNNNRTG | 3 cut(s) | 146, 300, 1446 |
| SacI | GAGCTC | 1 cut(s) | 1229 |
| SaqAI | TTAA | 4 cut(s) | 531, 1245, 1397, 1732 |
| SatI | GCNGC | 5 cut(s) | 6, 178, 474, 1370, 1553 |
| Sau3AI | GATC | 3 cut(s) | 1191, 1317, 1345 |
| Sau96I | GGNCC | 3 cut(s) | 1219, 1337, 1592 |
| ScrFI | CCNGG | 3 cut(s) | 274, 1058, 1430 |
| SduI | GDGCHC | 1 cut(s) | 1229 |
| SexAI | ACCWGGT | 1 cut(s) | 272 |
| SfaNI | GCATC | 3 cut(s) | 385, 1009, 1581 |
| SinI | GGWCC | 1 cut(s) | 1219 |
| SmiMI | CAYNNNNRTG | 3 cut(s) | 146, 300, 1446 |
| SseBI | AGGCCT | 1 cut(s) | 99 |
| SsiI | CCGC | 4 cut(s) | 45, 428, 1402, 1484 |
| SspMI | CTAG | 4 cut(s) | 497, 812, 1518, 1652 |
| SstI | GAGCTC | 1 cut(s) | 1229 |
| StuI | AGGCCT | 1 cut(s) | 99 |
| StyD4I | CCNGG | 3 cut(s) | 272, 1056, 1428 |
| TaaI | ACNGT | 3 cut(s) | 569, 1333, 1499 |
| TaiI | ACGT | 3 cut(s) | 522, 1002, 1259 |
| TaqI | TCGA | 3 cut(s) | 1265, 1271, 1494 |
| TfiI | GAWTC | 4 cut(s) | 596, 815, 1469, 1723 |
| Tru1I | TTAA | 4 cut(s) | 531, 1245, 1397, 1732 |
| Tru9I | TTAA | 4 cut(s) | 531, 1245, 1397, 1732 |
| TscAI | CASTG | 3 cut(s) | 1017, 1201, 1338 |
| TseFI | GTSAC | 2 cut(s) | 302, 515 |
| TseI | GCWGC | 5 cut(s) | 5, 177, 473, 1369, 1552 |
| Tsp45I | GTSAC | 2 cut(s) | 302, 515 |
| TspGWI | ACGGA | 4 cut(s) | 236, 589, 966, 1436 |
| TspRI | CASTG | 3 cut(s) | 1017, 1201, 1338 |
| Tth111I | GACNNNGTC | 1 cut(s) | 274 |
| VpaK11BI | GGWCC | 1 cut(s) | 1219 |
| VspI | ATTAAT | 1 cut(s) | 1245 |
| XapI | RAATTY | 7 cut(s) | 133, 253, 524, 785, 924, 1668, 1709 |
| XbaI | TCTAGA | 1 cut(s) | 811 |
| XcmI | CCANNNNNNNNNTGG | 2 cut(s) | 145, 988 |
| XmnI | GAANNNNTTC | 3 cut(s) | 588, 769, 1468 |
| XspI | CTAG | 4 cut(s) | 497, 812, 1518, 1652 |