Rh1AG452200

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1A
OG0009192
Physical Location & Seq
Reverse (-)
67221421 .. 67228286
6866 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1AG452200.1

Sequence Viewer

Length: 2946 bp
ATGGCAGCTTCTCTTCTTCTCCCTTCTCACTTCTTCAACACCTACAGGATAAGTAAACTGTGCTTACATCACATGCAGTCAACAAATCCACACAAAGGCATCACTTGCTTATTCCCTGTTAGACCACTGGCCTCAAGGTCTTTTGCTTCAGTTGGGTCAGTAGAAAGTCATGTCTCAGCTCCAAACAACACCCACAGGTCTGAAGGTTCTAAAACATCCAATGGGACGAAGAATGATTTCGAGAGAGAGTTACAGGAGTTGTTTGATGAAGTGAAAATGTTGGTTATGAATGGGAATAAAGATGATGCATTAGACCTACTTCGAGCAAATTATGAGGCTGTGAAGGAGAGGATGGATGTTGGTATTAGAGGCATTGAGGAAGCTGCTACGATTGACATCATAGCTCTAGGGTACATGGCTATTGGCGACTTTAAGTTTGTCGAGTCATTACTGGATATGTTGAATGAGATTGTTGGCAGTCTAAAGGATGATGAACCACTGCTGGATTCAGTTCTGGTGCATATGGGAAGCATGTATTCAACTTTGGGGAAGTTTGAGAAATCAATGCTTGTATATTGGAGGGCAATTGATAACATGGAGAACATGTATGGGAAAAATAGTGTTTTTCTTATCACACCAATTTTGGGCATGGCGAAAGTTCTCAGTTCTATTGGAAGGACTACAAAAGCAGTAGAGTTATACCATCGTGCAATAACTCTTCTCGAATCTAGCAGAGGTGCTGAAAGTGAGGATTTGGCCATACCTTTGTTTGGTCTTGGCAGCCTTTTACTCAAACAAGGGAAACCTATTGAGGCAGAAACTCCTTTTCTAAGAATTTTAAATATATACACAAAGTTGTATGGAGAAGACGACGGAAGAGTTGGAATGGCTATGAGTTCCCTGGCCCATGCCAAGTGTGCAATGGGAAAGGCAAATGAAGCAATTGATTTATATAAAAAGGCTCTTAAAGTCATCAAGGATTCCAATTATATGGCTTCAGATGACAGCATAGTGGAGAAGATGCGGATAGATTTGGCAGAATTACTTCATGCTGTTGGAAGGGGAAAGGAAGGCCGAGAGCTACTGGAGGAATGCTTGCTGATCACTGAGAAACACAAAGGCAAAGAGGACCCCAGCTCAGTGACACACCTTATCAATCTCGCAACTTCACATTCGCGATCAAAGAACTATGTGGAGGCTGAGCGCTTGCTGAGGACGAGTTTGCAGGTCTTGGCAAAGACAGTGGCGCCCGATGACCAATCCATCTCATTCCCAATGTTGCATCTTGCCATTACTCTCTACCAATTAAAACGGGACGAAGAAGCAGAACAACTCGCCCTCCAGGCTTTGCACATTCGTGAGAAAGCATTCGGAAAGGACTCCCTTCCCGTTGCGGAGGCTCTCGACTGTCTGGTGTCAATCCAAACTAGACTGATGAGGGACGACAAAGCGTTACTAGATCAGCTGAAGAGGGTTTTGAGCATCCAAGAGAAAGATTTCGGCCCCGAGAGCAAGGAGTGTCGTATAGTTGAGCCTTTTGCCGAAAGCAAAACGAAGACAGAACCCATCTTTTTTGTAAAGATAAGGGTAATGGCAGCAGCCGAAGCACGGACTGGATGGCAGCATAGAGCGAATTGTTGTTTTGCCCAAGACAATGTGAGGAGTGCTCAAAGATTTGCGCGTCACCCGTCATCGTCTTCCTCAAAAGAATCTGATAGTGCTCCTGAGAATGCTTCGTATGGGATTGATCAGCTTATCCCAGATTGCATGCCTTATAACTCAAATCCGGAGCTAACACCCAGCACTAGGTGGTGGTTGAACCTGGAACCTAACTTTGGGCCTCAGAAGGAATTTATCTATGATCAGCAAAAGAGCCTGAACGCTGAACTTGAAGTTTTGAATTCTGGATATATTAATAAAACTGCCATCATAAGTGATTATTATCAGTGCAAGGAGGTATTTAGTACTCAGAGTGATAGTGAGAAGGGTGTCAACAGTTTTGTGGAGAAACCATGCAAGGTTTCAGTCACTTCTCCAAGAAATGACCCGAGTAAGAGAATGCAAGAACTCAAGGCTGGAATTGGTGATGGTCCGCAGCTGCCTAAGAAAAGGGACACAGGGGAGTTTTGGTACTCCGATGATGATTTCATGAACTTGGATTCTTTCAGCAGCTTGGATTCTGAACAAAACAAAAAGCTGTCTCCCGATTTGGATTCCCAATGGGTGGGAAGTGAGAAGTCTGAACCCTGGTGGCGCTCTGCTGGTAAAGATGAGTTGGCTTCCTTGGTTGCTCAGAAATCACTTGAAAATGTTGAGAATTGTGATCTTCCACGGCCCCAGATTAAGCATAGTAGGATGGGTCCTATCGCTTCTACAAAGTTTCCTGACCCTAATTTGTCCTTAGATCAGATGACTGAACTGGGATTGTCCAATGTCACCACTTATACTCAGGGAAGCTTTACTTCAGGTCACTCAATATATGATTCAGACAGTCCACTAAGCCACAACAATGATCATGCTGCAACCAACCAAGATGAGCCAGACGATGAACGAAGTAAAGCTCAGCTGCTGGAAGCTTTGTGTCATTCTCAAACACGAGCTAGGAAAGCTGAGAAAGCTGCACAGCAGGCCTATACAGAGAAGGAGCACATCATCAGTCTCTTTTTCAAACAGGCATCACAGCTGTTTGCCTACAAGCAGTGGCTCCATTTGCTGCAAATCGAGAACTTTTGCCTGCAGCTTAATAAAAAAGATGGCTTACCATGGTCCCCATACAAAGGCAGGCCCATGAAGAAGAAGGCTCACCGCAGGGCAGGAAAGAGGAGCGGCAGCAGGCCAAGGTATGAGATCAGCAAGGGTGCTGTTGCTTTTGCAGTAGGATTAGGTCTTGCCAGTGCGGGCTTGCTCCTCGGATGGACTATGGGGTGGTTGTTTCCAACTGCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

981

Amino Acids

109.77

Weight (kDa)

6.25

Isoelectric Point (pI)

44.1

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TPR_NPHP3 PF24885 160 - 241 4.3e-06 Nephrocystin-3 TPR domain
TPR_MalT PF17874 171 - 452 6.5e-13 MalT-like TPR region
TPR_12 PF13424 215 - 285 1.4e-09 Tetratricopeptide repeat
TPR_12 PF13424 253 - 324 7.6e-11 Tetratricopeptide repeat
TPR_12 PF13424 343 - 411 5.8e-09 Tetratricopeptide repeat
TPR_NPHP3 PF24885 402 - 500 3.5e-06 Nephrocystin-3 TPR domain
TPR_10 PF13374 426 - 461 3.3e-07 Tetratricopeptide repeat
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1776
Acc36I ACCTGC 1 cut(s) 1216
AccB1I GGYRCC 1 cut(s) 1246
AccB7I CCANNNNNTGG 1 cut(s) 2224
AccBSI CCGCTC 1 cut(s) 2826
AccII CGCG 2 cut(s) 1177, 1681
AccIII TCCGGA 1 cut(s) 1786
AciI CCGC 6 cut(s) 1024, 1394, 2093, 2806, 2826, 2897
AcoI YGGCCR 1 cut(s) 756
AcsI RAATTY 3 cut(s) 834, 1850, 1900
AcuI CTGAAG 5 cut(s) 132, 222, 981, 1487, 2448
AcyI GRCGYC 1 cut(s) 1247
AdeI CACNNNGTG 1 cut(s) 1809
AfaI GTAC 3 cut(s) 413, 1966, 2132
AfeI AGCGCT 1 cut(s) 1205
AfiI CCNNNNNNNGG 8 cut(s) 95, 644, 770, 1608, 1806, 1835, 2224, 2777
AflIII ACRYGT 1 cut(s) 603
AgsI TTSAA 8 cut(s) 37, 463, 540, 1819, 1892, 1900, 2306, 2668
AjnI CCWGG 4 cut(s) 900, 1341, 1821, 2246
AjuI GAANNNNNNNTTGG 2 cut(s) 1818, 1850
AleI CACNNNNGTG 1 cut(s) 1356
Alw21I GWGCWC 3 cut(s) 1669, 1723, 2649
Alw26I GTCTC 3 cut(s) 178, 2205, 2663
AlwNI CAGNNNCTG 1 cut(s) 2569
Ama87I CYCGRG 2 cut(s) 1505, 2047
Aor13HI TCCGGA 1 cut(s) 1786
Aor51HI AGCGCT 1 cut(s) 1205
ApoI RAATTY 3 cut(s) 834, 1850, 1900
ArsI GACNNNNNNTTYG 2 cut(s) 419, 451
AseI ATTAAT 1 cut(s) 1914
Asp700I GAANNNNTTC 4 cut(s) 236, 1044, 1367, 1496
AspLEI GCGC 4 cut(s) 1206, 1249, 1681, 2256
AspS9I GGNCC 9 cut(s) 904, 1129, 1502, 1838, 2090, 2334, 2360, 2766, 2784
AsuHPI GGTGA 4 cut(s) 1676, 2096, 2428, 2795
AvaI CYCGRG 2 cut(s) 1505, 2047
AvaII GGWCC 4 cut(s) 1129, 2090, 2360, 2766
BalI TGGCCA 1 cut(s) 758
BanI GGYRCC 1 cut(s) 1246
BauI CACGAG 1 cut(s) 2595
BbsI GAAGAC 3 cut(s) 873, 1562, 1689
Bbv12I GWGCWC 3 cut(s) 1669, 1723, 2649
BbvCI CCTCAGC 1 cut(s) 1211
BceAI ACGGC 1 cut(s) 2348
BciT130I CCWGG 4 cut(s) 902, 1343, 1823, 2248
BclI TGATCA 4 cut(s) 1101, 1747, 1861, 2512
BcoDI GTCTC 3 cut(s) 178, 2205, 2663
BfaI CTAG 6 cut(s) 407, 729, 1428, 1457, 1806, 2601
BfmI CTRYAG 2 cut(s) 43, 2735
BfoI RGCGCY 3 cut(s) 1207, 1250, 2257
BfuAI ACCTGC 1 cut(s) 1216
BglI GCCNNNNNGGC 1 cut(s) 1343
BlpI GCTNAGC 2 cut(s) 1200, 2562
BmcAI AGTACT 1 cut(s) 1966
Bme1390I CCNGG 4 cut(s) 902, 1343, 1823, 2248
Bme18I GGWCC 4 cut(s) 1129, 2090, 2360, 2766
BmeT110I CYCGRG 2 cut(s) 1505, 2047
BmgT120I GGNCC 9 cut(s) 904, 1129, 1502, 1838, 2090, 2334, 2360, 2766, 2784
BmiI GGNNCC 8 cut(s) 1131, 1248, 1504, 1827, 2336, 2361, 2705, 2768
BmrFI CCNGG 4 cut(s) 902, 1343, 1823, 2248
BmrI ACTGGG 1 cut(s) 2429
BmsI GCATC 6 cut(s) 108, 295, 1011, 1291, 1491, 2684
BmuI ACTGGG 1 cut(s) 2429
BpiI GAAGAC 3 cut(s) 873, 1562, 1689
BplI GAGNNNNNCTC 2 cut(s) 1651, 1683
BpmI CTGGAG 2 cut(s) 1106, 1325
Bpu10I CCTNAGC 1 cut(s) 1211
Bpu1102I GCTNAGC 2 cut(s) 1200, 2562
BpuEI CTTGAG 2 cut(s) 118, 2054
BsaBI GATNNNNATC 2 cut(s) 395, 1941
BsaHI GRCGYC 1 cut(s) 1247
BsaJI CCNNGG 7 cut(s) 900, 2246, 2283, 2330, 2762, 2837, 2908
BsaWI WCCGGW 1 cut(s) 1786
BsaXI ACNNNNNCTCC 6 cut(s) 590, 620, 1323, 1353, 2114, 2144
Bsc4I CCNNNNNNNGG 8 cut(s) 95, 644, 770, 1608, 1806, 1835, 2224, 2777
Bse1I ACTGG 6 cut(s) 132, 456, 1089, 1618, 2424, 2892
Bse3DI GCAATG 1 cut(s) 927
Bse8I GATNNNNATC 2 cut(s) 395, 1941
BseAI TCCGGA 1 cut(s) 1786
BseBI CCWGG 4 cut(s) 902, 1343, 1823, 2248
BseDI CCNNGG 7 cut(s) 900, 2246, 2283, 2330, 2762, 2837, 2908
BseGI GGATG 8 cut(s) 215, 357, 361, 493, 1482, 1622, 2361, 2918
BseJI GATNNNNATC 2 cut(s) 395, 1941
BseLI CCNNNNNNNGG 8 cut(s) 95, 644, 770, 1608, 1806, 1835, 2224, 2777
BseMI GCAATG 1 cut(s) 927
BseNI ACTGG 6 cut(s) 132, 456, 1089, 1618, 2424, 2892
BseRI GAGGAG 3 cut(s) 1675, 2836, 2897
BseYI CCCAGC 2 cut(s) 1133, 1799
BsgI GTGCAG 1 cut(s) 2604
Bsh1236I CGCG 2 cut(s) 1177, 1681
BshNI GGYRCC 1 cut(s) 1246
BsiHKAI GWGCWC 3 cut(s) 1669, 1723, 2649
BsiHKCI CYCGRG 2 cut(s) 1505, 2047
BsiSI CCGG 1 cut(s) 1787
BslFI GGGAC 5 cut(s) 238, 1328, 1454, 2126, 2752
BslI CCNNNNNNNGG 8 cut(s) 95, 644, 770, 1608, 1806, 1835, 2224, 2777
BsmAI GTCTC 3 cut(s) 178, 2205, 2663
BsmFI GGGAC 5 cut(s) 238, 1328, 1454, 2126, 2752
BsmI GAATGC 4 cut(s) 1097, 1367, 1735, 2064
BsoBI CYCGRG 2 cut(s) 1505, 2047
Bsp1286I GDGCHC 3 cut(s) 1669, 1723, 2649
Bsp13I TCCGGA 1 cut(s) 1786
Bsp143I GATC 9 cut(s) 1101, 1178, 1459, 1747, 1861, 2323, 2404, 2512, 2847
Bsp1720I GCTNAGC 2 cut(s) 1200, 2562
Bsp19I CCATGG 1 cut(s) 2762
Bsp68I TCGCGA 1 cut(s) 1177
BspACI CCGC 6 cut(s) 1024, 1394, 2093, 2806, 2826, 2897
BspEI TCCGGA 1 cut(s) 1786
BspFNI CGCG 2 cut(s) 1177, 1681
BspHI TCATGA 1 cut(s) 2148
BspLI GGNNCC 8 cut(s) 1131, 1248, 1504, 1827, 2336, 2361, 2705, 2768
BspMAI CTGCAG 1 cut(s) 2739
BspMI ACCTGC 1 cut(s) 1216
BspT107I GGYRCC 1 cut(s) 1246
BsrBI CCGCTC 1 cut(s) 2826
BsrDI GCAATG 1 cut(s) 927
BsrI ACTGG 6 cut(s) 132, 456, 1089, 1618, 2424, 2892
BssECI CCNNGG 7 cut(s) 900, 2246, 2283, 2330, 2762, 2837, 2908
BssMI GATC 9 cut(s) 1101, 1178, 1459, 1747, 1861, 2323, 2404, 2512, 2847
BssNI GRCGYC 1 cut(s) 1247
BssSI CACGAG 1 cut(s) 2595
BssT1I CCWWGG 3 cut(s) 2283, 2762, 2837
Bst2BI CACGAG 1 cut(s) 2595
Bst2UI CCWGG 4 cut(s) 902, 1343, 1823, 2248
Bst4CI ACNGT 5 cut(s) 60, 1243, 1409, 1997, 2492
Bst6I CTCTTC 4 cut(s) 18, 723, 871, 1463
BstACI GRCGYC 1 cut(s) 1247
BstAPI GCANNNNNTGC 1 cut(s) 105
BstC8I GCNNGC 9 cut(s) 1097, 1208, 1769, 2628, 2735, 2783, 2834, 2899, 2903
BstDSI CCRYGG 2 cut(s) 2330, 2762
BstF5I GGATG 8 cut(s) 215, 357, 361, 493, 1482, 1622, 2361, 2918
BstFNI CGCG 2 cut(s) 1177, 1681
BstH2I RGCGCY 3 cut(s) 1207, 1250, 2257
BstHHI GCGC 4 cut(s) 1206, 1249, 1681, 2256
BstKTI GATC 9 cut(s) 1104, 1181, 1462, 1750, 1864, 2326, 2407, 2515, 2850
BstMAI GTCTC 3 cut(s) 178, 2205, 2663
BstMBI GATC 9 cut(s) 1101, 1178, 1459, 1747, 1861, 2323, 2404, 2512, 2847
BstNI CCWGG 4 cut(s) 902, 1343, 1823, 2248
BstNSI RCATGY 4 cut(s) 76, 535, 607, 1771
BstSCI CCNGG 4 cut(s) 900, 1341, 1821, 2246
BstSFI CTRYAG 2 cut(s) 43, 2735
BstUI CGCG 2 cut(s) 1177, 1681
BstV2I GAAGAC 3 cut(s) 873, 1562, 1689
BstXI CCANNNNNNTGG 1 cut(s) 991
BtgI CCRYGG 2 cut(s) 2330, 2762
BtsCI GGATG 8 cut(s) 215, 357, 361, 493, 1482, 1622, 2361, 2918
BtsI GCAGTG 2 cut(s) 497, 2705
BtsIMutI CAGTG 8 cut(s) 125, 497, 1104, 1146, 1248, 1952, 2705, 2899
BtuMI TCGCGA 1 cut(s) 1177
BveI ACCTGC 1 cut(s) 1216
Cac8I GCNNGC 9 cut(s) 1097, 1208, 1769, 2628, 2735, 2783, 2834, 2899, 2903
CaiI CAGNNNCTG 1 cut(s) 2569
CciI TCATGA 1 cut(s) 2148
CfoI GCGC 4 cut(s) 1206, 1249, 1681, 2256
Cfr13I GGNCC 9 cut(s) 904, 1129, 1502, 1838, 2090, 2334, 2360, 2766, 2784
CseI GACGC 1 cut(s) 1670
Csp6I GTAC 3 cut(s) 412, 1965, 2131
CspCI CAANNNNNGTGG 2 cut(s) 1224, 1259
CviQI GTAC 3 cut(s) 412, 1965, 2131
DinI GGCGCC 1 cut(s) 1248
DpnI GATC 9 cut(s) 1103, 1180, 1461, 1749, 1863, 2325, 2406, 2514, 2849
DpnII GATC 9 cut(s) 1101, 1178, 1459, 1747, 1861, 2323, 2404, 2512, 2847
DraI TTTAAA 1 cut(s) 840
DraIII CACNNNGTG 1 cut(s) 1809
EaeI YGGCCR 1 cut(s) 756
Eam1104I CTCTTC 4 cut(s) 18, 723, 871, 1463
EarI CTCTTC 4 cut(s) 18, 723, 871, 1463
Eco130I CCWWGG 3 cut(s) 2283, 2762, 2837
Eco147I AGGCCT 1 cut(s) 2630
Eco47I GGWCC 4 cut(s) 1129, 2090, 2360, 2766
Eco47III AGCGCT 1 cut(s) 1205
Eco57I CTGAAG 5 cut(s) 132, 222, 981, 1487, 2448
Eco88I CYCGRG 2 cut(s) 1505, 2047
EcoO109I RGGNCCY 2 cut(s) 1129, 2360
EcoRI GAATTC 1 cut(s) 1900
EcoRII CCWGG 4 cut(s) 900, 1341, 1821, 2246
EcoT14I CCWWGG 3 cut(s) 2283, 2762, 2837
EcoT22I ATGCAT 1 cut(s) 310
EgeI GGCGCC 1 cut(s) 1248
EheI GGCGCC 1 cut(s) 1248
ErhI CCWWGG 3 cut(s) 2283, 2762, 2837
FalI AAGNNNNNCTT 2 cut(s) 2446, 2478
FaqI GGGAC 5 cut(s) 238, 1328, 1454, 2126, 2752
FauI CCCGC 1 cut(s) 2890
FauNDI CATATG 1 cut(s) 522
FbaI TGATCA 4 cut(s) 1101, 1747, 1861, 2512
FokI GGATG 8 cut(s) 202, 364, 368, 500, 1469, 1629, 2368, 2925
FspBI CTAG 6 cut(s) 407, 729, 1428, 1457, 1806, 2601
GlaI GCGC 4 cut(s) 1205, 1248, 1680, 2255
GsaI CCCAGC 2 cut(s) 1137, 1803
GsuI CTGGAG 2 cut(s) 1106, 1325
HaeII RGCGCY 3 cut(s) 1207, 1250, 2257
HapII CCGG 1 cut(s) 1787
HgaI GACGC 1 cut(s) 1670
HhaI GCGC 4 cut(s) 1206, 1249, 1681, 2256
Hin1I GRCGYC 1 cut(s) 1247
Hin6I GCGC 4 cut(s) 1204, 1247, 1679, 2254
HinP1I GCGC 4 cut(s) 1204, 1247, 1679, 2254
HincII GTYRAC 2 cut(s) 81, 1993
HindII GTYRAC 2 cut(s) 81, 1993
HindIII AAGCTT 2 cut(s) 2455, 2574
HpaII CCGG 1 cut(s) 1787
HphI GGTGA 4 cut(s) 1676, 2096, 2428, 2795
Hpy166II GTNNAC 4 cut(s) 56, 81, 1993, 2495
Hpy8I GTNNAC 4 cut(s) 56, 81, 1993, 2495
Hpy99I CGWCG 1 cut(s) 875
HpyCH4III ACNGT 5 cut(s) 60, 1243, 1409, 1997, 2492
Hsp92I GRCGYC 1 cut(s) 1247
HspAI GCGC 4 cut(s) 1204, 1247, 1679, 2254
KasI GGCGCC 1 cut(s) 1246
Kpn2I TCCGGA 1 cut(s) 1786
Ksp22I TGATCA 4 cut(s) 1101, 1747, 1861, 2512
Kzo9I GATC 9 cut(s) 1101, 1178, 1459, 1747, 1861, 2323, 2404, 2512, 2847
LmnI GCTCC 7 cut(s) 184, 1726, 1789, 2644, 2709, 2823, 2910
LweI GCATC 6 cut(s) 108, 295, 1011, 1291, 1491, 2684
MaeI CTAG 6 cut(s) 407, 729, 1428, 1457, 1806, 2601
MaeIII GTNAC 7 cut(s) 249, 1141, 1452, 1682, 2026, 2434, 2468
MalI GATC 9 cut(s) 1103, 1180, 1461, 1749, 1863, 2325, 2406, 2514, 2849
MbiI CCGCTC 1 cut(s) 2826
MboI GATC 9 cut(s) 1101, 1178, 1459, 1747, 1861, 2323, 2404, 2512, 2847
MfeI CAATTG 2 cut(s) 585, 942
MhlI GDGCHC 3 cut(s) 1669, 1723, 2649
MlsI TGGCCA 1 cut(s) 758
MluNI TGGCCA 1 cut(s) 758
Mly113I GGCGCC 1 cut(s) 1247
MlyI GAGTC 2 cut(s) 452, 1373
MmeI TCCRAC 2 cut(s) 862, 1036
Mox20I TGGCCA 1 cut(s) 758
Mph1103I ATGCAT 1 cut(s) 310
MroI TCCGGA 1 cut(s) 1786
MroXI GAANNNNTTC 4 cut(s) 236, 1044, 1367, 1496
MscI TGGCCA 1 cut(s) 758
MseI TTAA 8 cut(s) 432, 839, 966, 1307, 1914, 2343, 2742, 2944
MslI CAYNNNNRTG 2 cut(s) 1356, 2508
Msp20I TGGCCA 1 cut(s) 758
MspA1I CMGCKG 4 cut(s) 1465, 2098, 2566, 2683
MspI CCGG 1 cut(s) 1787
MspR9I CCNGG 4 cut(s) 902, 1343, 1823, 2248
MunI CAATTG 2 cut(s) 585, 942
Mva1269I GAATGC 4 cut(s) 1097, 1367, 1735, 2064
MvaI CCWGG 4 cut(s) 902, 1343, 1823, 2248
MvnI CGCG 2 cut(s) 1177, 1681
NarI GGCGCC 1 cut(s) 1247
NcoI CCATGG 1 cut(s) 2762
NdeI CATATG 1 cut(s) 522
NdeII GATC 9 cut(s) 1101, 1178, 1459, 1747, 1861, 2323, 2404, 2512, 2847
NlaIV GGNNCC 8 cut(s) 1131, 1248, 1504, 1827, 2336, 2361, 2705, 2768
NmeAIII GCCGAG 1 cut(s) 1100
NmuCI GTSAC 5 cut(s) 1141, 1682, 2026, 2434, 2468
NruI TCGCGA 1 cut(s) 1177
NsiI ATGCAT 1 cut(s) 310
NspI RCATGY 4 cut(s) 76, 535, 607, 1771
OliI CACNNNNGTG 1 cut(s) 1356
PaeI GCATGC 1 cut(s) 1771
PagI TCATGA 1 cut(s) 2148
PceI AGGCCT 1 cut(s) 2630
PciI ACATGT 1 cut(s) 603
PctI GAATGC 4 cut(s) 1097, 1367, 1735, 2064
PdmI GAANNNNTTC 4 cut(s) 236, 1044, 1367, 1496
PfeI GAWTC 8 cut(s) 506, 725, 980, 1709, 2159, 2177, 2213, 2483
PflMI CCANNNNNTGG 1 cut(s) 2224
PleI GAGTC 2 cut(s) 451, 1373
PluTI GGCGCC 1 cut(s) 1250
PpsI GAGTC 2 cut(s) 451, 1373
PpuMI RGGWCCY 2 cut(s) 1129, 2360
PscI ACATGT 1 cut(s) 603
PshBI ATTAAT 1 cut(s) 1914
PsiI TTATAA 1 cut(s) 1776
Psp5II RGGWCCY 2 cut(s) 1129, 2360
Psp6I CCWGG 4 cut(s) 900, 1341, 1821, 2246
PspFI CCCAGC 2 cut(s) 1133, 1799
PspGI CCWGG 4 cut(s) 900, 1341, 1821, 2246
PspN4I GGNNCC 8 cut(s) 1131, 1248, 1504, 1827, 2336, 2361, 2705, 2768
PspPI GGNCC 9 cut(s) 904, 1129, 1502, 1838, 2090, 2334, 2360, 2766, 2784
PspPPI RGGWCCY 2 cut(s) 1129, 2360
PstI CTGCAG 1 cut(s) 2739
PstNI CAGNNNCTG 1 cut(s) 2569
PvuII CAGCTG 4 cut(s) 1465, 2098, 2566, 2683
RruI TCGCGA 1 cut(s) 1177
RsaI GTAC 3 cut(s) 413, 1966, 2132
RsaNI GTAC 3 cut(s) 412, 1965, 2131
RseI CAYNNNNRTG 2 cut(s) 1356, 2508
SaqAI TTAA 8 cut(s) 432, 839, 966, 1307, 1914, 2343, 2742, 2944
Sau3AI GATC 9 cut(s) 1101, 1178, 1459, 1747, 1861, 2323, 2404, 2512, 2847
Sau96I GGNCC 9 cut(s) 904, 1129, 1502, 1838, 2090, 2334, 2360, 2766, 2784
ScaI AGTACT 1 cut(s) 1966
SchI GAGTC 2 cut(s) 452, 1373
ScrFI CCNGG 4 cut(s) 902, 1343, 1823, 2248
SduI GDGCHC 3 cut(s) 1669, 1723, 2649
SfaNI GCATC 6 cut(s) 108, 295, 1011, 1291, 1491, 2684
SfcI CTRYAG 2 cut(s) 43, 2735
SfoI GGCGCC 1 cut(s) 1248
SinI GGWCC 4 cut(s) 1129, 2090, 2360, 2766
SmiMI CAYNNNNRTG 2 cut(s) 1356, 2508
SmlI CTYRAG 2 cut(s) 133, 2069
SmoI CTYRAG 2 cut(s) 133, 2069
SphI GCATGC 1 cut(s) 1771
SseBI AGGCCT 1 cut(s) 2630
SsiI CCGC 6 cut(s) 1024, 1394, 2093, 2806, 2826, 2897
SspDI GGCGCC 1 cut(s) 1246
SspMI CTAG 6 cut(s) 407, 729, 1428, 1457, 1806, 2601
StuI AGGCCT 1 cut(s) 2630
StyD4I CCNGG 4 cut(s) 900, 1341, 1821, 2246
StyI CCWWGG 3 cut(s) 2283, 2762, 2837
TaaI ACNGT 5 cut(s) 60, 1243, 1409, 1997, 2492
TaqI TCGA 6 cut(s) 240, 322, 441, 723, 1404, 2721
TatI WGTACW 1 cut(s) 1964
TauI GCSGC 1 cut(s) 2829
TfiI GAWTC 8 cut(s) 506, 725, 980, 1709, 2159, 2177, 2213, 2483
Tru1I TTAA 8 cut(s) 432, 839, 966, 1307, 1914, 2343, 2742, 2944
Tru9I TTAA 8 cut(s) 432, 839, 966, 1307, 1914, 2343, 2742, 2944
TscAI CASTG 8 cut(s) 132, 504, 1111, 1146, 1248, 1952, 2705, 2899
TseFI GTSAC 5 cut(s) 1141, 1682, 2026, 2434, 2468
Tsp45I GTSAC 5 cut(s) 1141, 1682, 2026, 2434, 2468
TspDTI ATGAA 9 cut(s) 282, 302, 507, 951, 1037, 2137, 2165, 2562, 2804
TspGWI ACGGA 2 cut(s) 888, 1624
TspRI CASTG 8 cut(s) 132, 504, 1111, 1146, 1248, 1952, 2705, 2899
Van91I CCANNNNNTGG 1 cut(s) 2224
VpaK11BI GGWCC 4 cut(s) 1129, 2090, 2360, 2766
VspI ATTAAT 1 cut(s) 1914
XapI RAATTY 3 cut(s) 834, 1850, 1900
XceI RCATGY 4 cut(s) 76, 535, 607, 1771
XcmI CCANNNNNNNNNTGG 1 cut(s) 919
XmnI GAANNNNTTC 4 cut(s) 236, 1044, 1367, 1496
XspI CTAG 6 cut(s) 407, 729, 1428, 1457, 1806, 2601
ZrmI AGTACT 1 cut(s) 1966
Zsp2I ATGCAT 1 cut(s) 310
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.