Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr1

Orthogroup ID

OG0009192

Physical Location & Seq

Genomic Coordinates Reverse (-)

20605919 .. 20608862

Gene Structure 2944 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom01g23220.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1395 bp

ATGGCAGCTTCCCTTCTTCTCTCTCCTCCCTTCCCCAACAACAACGGGGTGAGCCAAGTGTGCTTGCATCACATGTTGCACTCTGGCCATTTGCACAAAAGCAGCAATTTCTTCTCTGTTTGTCTCCCGAAAGCGAATTGCAGCTTCAAGCTTTTCATGGTACCTGTTAGAAACTTTGACCTCTGTTGCGTCACCAGAAACCTTGCTTCTGTTGGCTCATTGGATGGAAACCTGGCAGCCCAACAAAAGCACTTTCACAGGTTCAAAACTTCTTTTAAGCAATCAAGCGATAAATTAGACGGGATGAAAAGTTTTGAGAGAGAGCTGCAAGAGTTATTTGATGAAGTCAAAAGGATGATTATGATGGGGAACAAAAATGATGCCATAGACCTACTTCAGGCCAATTATGAAGATGTGAAGGAACGGATGGATGCCGGCATTAGAGGCATTGAAGAAGCTGCCACCATCGACATCATAGCTCTAGGATACATGGCTATTGGCGACTTGAAATTTGTTGGTTCCCTACTGGATATGTTGAATGAAGTTGTTGGCAGTCTAAAGGATGATGAACTGCTTCTGGATTCAGTTCTCGTGCATATGGGGAGCATGTATTCAACTTTGGGAAAGTTTGAGAAATCAATGTCTGCATATAGGAGGGCTATTGGGAACATGGAGAACATATATGGGGAAAATAGTGTTTTTCTTATCACACCAATTTTGGGGATCGCAAAAGTTCTCACCTCCATCGGAAGAACTTCAAAAGCAGTAGAATTCTACAACCGTGCAATTACTCTTCTAGAATCAAGCAGAGGTGCTGAAAGTGAGGATTTGGTCATACCTTTATTTGGCCTTGGCAATCTTTTGCTCAAAGAAGGAAAGCCTACCGAGGCAGAAACTCCTTTTCTAAGAGTTTTGAACATATACAAAAAATTATATGGAGAAAATGATGGACGAGTTGGAGTGGCTATGTGCTCCCTGGCCCATGTGAAGTGTGCCATGGGAAATGCAAATGAAGCCATCTCTTTATATAGAAAAGCGCTCGAAGTGATCACGTCTTCCAATTATATGGCCTTAGATGACAGCATAATGGAGAAGATGAGGATAGATTTGGCAGAGTTACTTCATGCTGTTGGAAGAGGAAAGGAAGGCCGAGAGCTGCTGGAGGAATGTCTGATGATCACAGAGAGATATAAAGGTAAAGAGGACCCCAGCTCAGCGACACACCTTATTAATCTTGCAACTTCACATTCACGGTCAAAAAATTATGCGGAGGCTGAGCGCTTACTGAGGACAAGTTTGCAGATCATGGAAAAGACAGTGGGAGCTGATCGATCAATCTATCACGTTCCCAATGCTGCACCTCGCCGTTACACTCTACCATCTGAAACGGGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TPR_10 TPR_12 TPR_8

Protein Analysis

465

Amino Acids

51.51

Weight (kDa)

6.52

Isoelectric Point (pI)

36.98

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009192)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G53080
fragaria_vesca	FvH4_7g31990
malus_domestica	MD01G1222800.v1.1
prunus_persica	Prupe.2G313200_v2.0.a1 Prupe.2G313200_v2.0.a1 Prupe.2G313200_v2.0.a1 Prupe.2G313200_v2.0.a1 Prupe.2G313200_v2.0.a1 Prupe.2G313200_v2.0.a1 Prupe.2G313200_v2.0.a1
pyrus_communis	pycom01g23220 pycom07g26620
rosa_chinensis	RchiOBHm_Chr1g0381501
rosa_laevigata	RLG00000026227
rosa_multiflora	Rmu_sc0003688.1_g000009
rosa_roxburghii	Rroxscaffold_4G00278610
rosa_rugosa	Rorug01G0429000
rosa_samantha	Rh1AG452200 Rh1BG409500 Rh1CG424000 Rh1DG440800
rosa_wichuraiana	Rw1G039480

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	160
AccB1I	GGYRCC	1 cut(s)	160
AciI	CCGC	1 cut(s)	1268
AclWI	GGATC	1 cut(s)	731
AcoI	YGGCCR	1 cut(s)	85
AcsI	RAATTY	2 cut(s)	509, 770
AcuI	CTGAAG	1 cut(s)	380
AfaI	GTAC	1 cut(s)	162
AfeI	AGCGCT	2 cut(s)	1038, 1280
AfiI	CCNNNNNNNGG	3 cut(s)	397, 719, 845
AflIII	ACRYGT	1 cut(s)	72
AgsI	TTSAA	8 cut(s)	148, 265, 452, 508, 538, 615, 759, 916
AjiI	CACGTC	1 cut(s)	1053
AjnI	CCWGG	2 cut(s)	231, 975
AluBI	AGCT	9 cut(s)	8, 144, 151, 325, 458, 479, 1156, 1212, 1325
AluI	AGCT	9 cut(s)	8, 144, 151, 325, 458, 479, 1156, 1212, 1325
Alw21I	GWGCWC	1 cut(s)	974
Alw26I	GTCTC	1 cut(s)	128
AlwI	GGATC	1 cut(s)	731
Aor51HI	AGCGCT	2 cut(s)	1038, 1280
AoxI	GGCC	6 cut(s)	85, 399, 847, 978, 1068, 1147
ApeKI	GCWGC	8 cut(s)	5, 102, 141, 236, 325, 458, 1156, 1355
ApoI	RAATTY	2 cut(s)	509, 770
ArsI	GACNNNNNNTTYG	2 cut(s)	494, 526
AseI	ATTAAT	1 cut(s)	1230
Asp700I	GAANNNNTTC	2 cut(s)	573, 754
Asp718I	GGTACC	1 cut(s)	160
AspLEI	GCGC	2 cut(s)	1039, 1281
AspS9I	GGNCC	2 cut(s)	979, 1204
AsuHPI	GGTGA	3 cut(s)	61, 184, 730
AvaII	GGWCC	1 cut(s)	1204
BalI	TGGCCA	1 cut(s)	87
BanI	GGYRCC	1 cut(s)	160
BauI	CACGAG	1 cut(s)	590
BbsI	GAAGAC	1 cut(s)	1047
Bbv12I	GWGCWC	1 cut(s)	974
BbvI	GCAGC	8 cut(s)	17, 114, 153, 248, 312, 445, 1143, 1342
BccI	CCATC	8 cut(s)	218, 358, 421, 473, 752, 941, 1025, 1387
BceAI	ACGGC	1 cut(s)	1350
BciT130I	CCWGG	2 cut(s)	233, 977
BciVI	GTATCC	1 cut(s)	479
BclI	TGATCA	2 cut(s)	1047, 1176
BcoDI	GTCTC	1 cut(s)	128
BfaI	CTAG	2 cut(s)	482, 797
BfoI	RGCGCY	2 cut(s)	1040, 1282
BfuI	GTATCC	1 cut(s)	479
BisI	GCNGC	8 cut(s)	6, 103, 142, 237, 326, 459, 1157, 1356
BlpI	GCTNAGC	2 cut(s)	1213, 1275
BlsI	GCNGC	8 cut(s)	7, 104, 143, 238, 327, 460, 1158, 1357
Bme1390I	CCNGG	2 cut(s)	233, 977
Bme18I	GGWCC	1 cut(s)	1204
BmgBI	CACGTC	1 cut(s)	1053
BmgT120I	GGNCC	2 cut(s)	979, 1204
BmiI	GGNNCC	3 cut(s)	162, 520, 1206
BmrFI	CCNGG	2 cut(s)	233, 977
BmsI	GCATC	3 cut(s)	76, 370, 421
BpiI	GAAGAC	1 cut(s)	1047
BpmI	CTGGAG	1 cut(s)	1181
Bpu1102I	GCTNAGC	2 cut(s)	1213, 1275
Bsa29I	ATCGAT	1 cut(s)	1330
BsaJI	CCNNGG	4 cut(s)	850, 885, 975, 996
Bsc4I	CCNNNNNNNGG	3 cut(s)	397, 719, 845
Bse118I	RCCGGY	1 cut(s)	434
Bse1I	ACTGG	1 cut(s)	531
BseBI	CCWGG	2 cut(s)	233, 977
BseCI	ATCGAT	1 cut(s)	1330
BseDI	CCNNGG	4 cut(s)	850, 885, 975, 996
BseGI	GGATG	6 cut(s)	229, 309, 360, 432, 436, 568
BseLI	CCNNNNNNNGG	3 cut(s)	397, 719, 845
BseMII	CTCAG	3 cut(s)	1227, 1266, 1277
BseNI	ACTGG	1 cut(s)	531
BseRI	GAGGAG	1 cut(s)	15
BseXI	GCAGC	8 cut(s)	17, 114, 153, 248, 312, 445, 1143, 1342
BseYI	CCCAGC	1 cut(s)	1208
BsgI	GTGCAG	1 cut(s)	1341
BshFI	GGCC	6 cut(s)	87, 401, 849, 980, 1070, 1149
BshNI	GGYRCC	1 cut(s)	160
BshVI	ATCGAT	1 cut(s)	1330
BsiHKAI	GWGCWC	1 cut(s)	974
BsiSI	CCGG	1 cut(s)	435
BslI	CCNNNNNNNGG	3 cut(s)	397, 719, 845
BsmAI	GTCTC	1 cut(s)	128
BsnI	GGCC	6 cut(s)	87, 401, 849, 980, 1070, 1149
Bsp1286I	GDGCHC	1 cut(s)	974
Bsp143I	GATC	6 cut(s)	723, 1047, 1176, 1302, 1327, 1331
Bsp1720I	GCTNAGC	2 cut(s)	1213, 1275
Bsp19I	CCATGG	1 cut(s)	996
BspACI	CCGC	1 cut(s)	1268
BspANI	GGCC	6 cut(s)	87, 401, 849, 980, 1070, 1149
BspCNI	CTCAG	3 cut(s)	1226, 1267, 1278
BspDI	ATCGAT	1 cut(s)	1330
BspLI	GGNNCC	3 cut(s)	162, 520, 1206
BspPI	GGATC	1 cut(s)	731
BspT107I	GGYRCC	1 cut(s)	160
BsrFI	RCCGGY	1 cut(s)	434
BsrI	ACTGG	1 cut(s)	531
BssAI	RCCGGY	1 cut(s)	434
BssECI	CCNNGG	4 cut(s)	850, 885, 975, 996
BssMI	GATC	6 cut(s)	723, 1047, 1176, 1302, 1327, 1331
BssSI	CACGAG	1 cut(s)	590
BssT1I	CCWWGG	2 cut(s)	850, 996
Bst2BI	CACGAG	1 cut(s)	590
Bst2UI	CCWGG	2 cut(s)	233, 977
Bst4CI	ACNGT	3 cut(s)	782, 1254, 1318
Bst6I	CTCTTC	2 cut(s)	798, 1129
BstC8I	GCNNGC	2 cut(s)	65, 436
BstDEI	CTNAG	5 cut(s)	905, 1072, 1213, 1275, 1286
BstDSI	CCRYGG	1 cut(s)	996
BstENI	CCTNNNNNAGG	1 cut(s)	395
BstF5I	GGATG	6 cut(s)	229, 309, 360, 432, 436, 568
BstH2I	RGCGCY	2 cut(s)	1040, 1282
BstHHI	GCGC	2 cut(s)	1039, 1281
BstKTI	GATC	6 cut(s)	726, 1050, 1179, 1305, 1330, 1334
BstMAI	GTCTC	1 cut(s)	128
BstMBI	GATC	6 cut(s)	723, 1047, 1176, 1302, 1327, 1331
BstMWI	GCNNNNNNNGC	3 cut(s)	60, 444, 1013
BstNI	CCWGG	2 cut(s)	233, 977
BstNSI	RCATGY	2 cut(s)	76, 610
BstSCI	CCNGG	2 cut(s)	231, 975
BstV1I	GCAGC	8 cut(s)	17, 114, 153, 248, 312, 445, 1143, 1342
BstV2I	GAAGAC	1 cut(s)	1047
BstXI	CCANNNNNNTGG	1 cut(s)	1066
Bsu15I	ATCGAT	1 cut(s)	1330
BsuI	GTATCC	1 cut(s)	479
BsuRI	GGCC	6 cut(s)	87, 401, 849, 980, 1070, 1149
BsuTUI	ATCGAT	1 cut(s)	1330
BtgI	CCRYGG	1 cut(s)	996
BtrI	CACGTC	1 cut(s)	1053
BtsCI	GGATG	6 cut(s)	229, 309, 360, 432, 436, 568
BtsIMutI	CAGTG	1 cut(s)	1323
Cac8I	GCNNGC	2 cut(s)	65, 436
CfoI	GCGC	2 cut(s)	1039, 1281
Cfr10I	RCCGGY	1 cut(s)	434
Cfr13I	GGNCC	2 cut(s)	979, 1204
ClaI	ATCGAT	1 cut(s)	1330
CseI	GACGC	1 cut(s)	178
Csp6I	GTAC	1 cut(s)	161
CviAII	CATG	9 cut(s)	73, 157, 490, 607, 670, 983, 997, 1124, 1306
CviQI	GTAC	1 cut(s)	161
DdeI	CTNAG	5 cut(s)	905, 1072, 1213, 1275, 1286
DpnI	GATC	6 cut(s)	725, 1049, 1178, 1304, 1329, 1333
DpnII	GATC	6 cut(s)	723, 1047, 1176, 1302, 1327, 1331
EaeI	YGGCCR	1 cut(s)	85
Eam1104I	CTCTTC	2 cut(s)	798, 1129
EarI	CTCTTC	2 cut(s)	798, 1129
Eco130I	CCWWGG	2 cut(s)	850, 996
Eco47I	GGWCC	1 cut(s)	1204
Eco47III	AGCGCT	2 cut(s)	1038, 1280
Eco57I	CTGAAG	1 cut(s)	380
EcoNI	CCTNNNNNAGG	1 cut(s)	395
EcoO109I	RGGNCCY	1 cut(s)	1204
EcoRI	GAATTC	1 cut(s)	770
EcoRII	CCWGG	2 cut(s)	231, 975
EcoT14I	CCWWGG	2 cut(s)	850, 996
ErhI	CCWWGG	2 cut(s)	850, 996
FaeI	CATG	9 cut(s)	76, 160, 493, 610, 673, 986, 1000, 1127, 1309
FatI	CATG	9 cut(s)	72, 156, 489, 606, 669, 982, 996, 1123, 1305
FauNDI	CATATG	1 cut(s)	597
FbaI	TGATCA	2 cut(s)	1047, 1176
Fnu4HI	GCNGC	8 cut(s)	6, 103, 142, 237, 326, 459, 1157, 1356
FokI	GGATG	6 cut(s)	236, 316, 367, 439, 443, 575
Fsp4HI	GCNGC	8 cut(s)	6, 103, 142, 237, 326, 459, 1157, 1356
FspBI	CTAG	2 cut(s)	482, 797
GlaI	GCGC	2 cut(s)	1038, 1280
GluI	GCNGC	8 cut(s)	6, 103, 142, 237, 326, 459, 1157, 1356
GsaI	CCCAGC	1 cut(s)	1212
GsuI	CTGGAG	1 cut(s)	1181
HaeII	RGCGCY	2 cut(s)	1040, 1282
HaeIII	GGCC	6 cut(s)	87, 401, 849, 980, 1070, 1149
HapII	CCGG	1 cut(s)	435
HgaI	GACGC	1 cut(s)	178
HhaI	GCGC	2 cut(s)	1039, 1281
Hin1II	CATG	9 cut(s)	76, 160, 493, 610, 673, 986, 1000, 1127, 1309
Hin6I	GCGC	2 cut(s)	1037, 1279
HinP1I	GCGC	2 cut(s)	1037, 1279
HindIII	AAGCTT	1 cut(s)	149
HinfI	GANTC	2 cut(s)	581, 800
HpaII	CCGG	1 cut(s)	435
HphI	GGTGA	3 cut(s)	61, 184, 730
Hpy188I	TCNGA	3 cut(s)	749, 1173, 1384
Hpy188III	TCNNGA	3 cut(s)	127, 578, 797
HpyAV	CCTTC	5 cut(s)	23, 40, 412, 866, 1139
HpyCH4III	ACNGT	3 cut(s)	782, 1254, 1318
HpyCH4IV	ACGT	2 cut(s)	1052, 1344
HpyF10VI	GCNNNNNNNGC	3 cut(s)	60, 444, 1013
HpyF3I	CTNAG	5 cut(s)	905, 1072, 1213, 1275, 1286
HpySE526I	ACGT	2 cut(s)	1052, 1344
Hsp92II	CATG	9 cut(s)	76, 160, 493, 610, 673, 986, 1000, 1127, 1309
HspAI	GCGC	2 cut(s)	1037, 1279
KpnI	GGTACC	1 cut(s)	164
KroI	GCCGGC	1 cut(s)	434
KroNI	GCCGGC	1 cut(s)	436
Ksp22I	TGATCA	2 cut(s)	1047, 1176
Kzo9I	GATC	6 cut(s)	723, 1047, 1176, 1302, 1327, 1331
LmnI	GCTCC	3 cut(s)	603, 977, 1322
Lsp1109I	GCAGC	8 cut(s)	17, 114, 153, 248, 312, 445, 1143, 1342
LweI	GCATC	3 cut(s)	76, 370, 421
MaeI	CTAG	2 cut(s)	482, 797
MaeII	ACGT	2 cut(s)	1052, 1344
MaeIII	GTNAC	3 cut(s)	190, 1116, 1367
MalI	GATC	6 cut(s)	725, 1049, 1178, 1304, 1329, 1333
MboI	GATC	6 cut(s)	723, 1047, 1176, 1302, 1327, 1331
MboII	GAAGA	9 cut(s)	8, 103, 422, 464, 762, 785, 1047, 1105, 1146
MhlI	GDGCHC	1 cut(s)	974
MlsI	TGGCCA	1 cut(s)	87
MluNI	TGGCCA	1 cut(s)	87
MmeI	TCCRAC	2 cut(s)	937, 1111
Mox20I	TGGCCA	1 cut(s)	87
MroNI	GCCGGC	1 cut(s)	434
MroXI	GAANNNNTTC	2 cut(s)	573, 754
MscI	TGGCCA	1 cut(s)	87
MseI	TTAA	2 cut(s)	276, 1230
Msp20I	TGGCCA	1 cut(s)	87
MspI	CCGG	1 cut(s)	435
MspR9I	CCNGG	2 cut(s)	233, 977
MvaI	CCWGG	2 cut(s)	233, 977
MwoI	GCNNNNNNNGC	3 cut(s)	60, 444, 1013
NaeI	GCCGGC	1 cut(s)	436
NcoI	CCATGG	1 cut(s)	996
NdeI	CATATG	1 cut(s)	597
NdeII	GATC	6 cut(s)	723, 1047, 1176, 1302, 1327, 1331
NgoMIV	GCCGGC	1 cut(s)	434
NlaIII	CATG	9 cut(s)	76, 160, 493, 610, 673, 986, 1000, 1127, 1309
NlaIV	GGNNCC	3 cut(s)	162, 520, 1206
NmeAIII	GCCGAG	1 cut(s)	1175
NmuCI	GTSAC	1 cut(s)	190
NspI	RCATGY	2 cut(s)	76, 610
PciI	ACATGT	1 cut(s)	72
PdiI	GCCGGC	1 cut(s)	436
PdmI	GAANNNNTTC	2 cut(s)	573, 754
PfeI	GAWTC	2 cut(s)	581, 800
PkrI	GCNGC	8 cut(s)	7, 104, 143, 238, 327, 460, 1158, 1357
PpuMI	RGGWCCY	1 cut(s)	1204
PscI	ACATGT	1 cut(s)	72
PshBI	ATTAAT	1 cut(s)	1230
Psp5II	RGGWCCY	1 cut(s)	1204
Psp6I	CCWGG	2 cut(s)	231, 975
PspFI	CCCAGC	1 cut(s)	1208
PspGI	CCWGG	2 cut(s)	231, 975
PspN4I	GGNNCC	3 cut(s)	162, 520, 1206
PspPI	GGNCC	2 cut(s)	979, 1204
PspPPI	RGGWCCY	1 cut(s)	1204
RsaI	GTAC	1 cut(s)	162
RsaNI	GTAC	1 cut(s)	161
SaqAI	TTAA	2 cut(s)	276, 1230
SatI	GCNGC	8 cut(s)	6, 103, 142, 237, 326, 459, 1157, 1356
Sau3AI	GATC	6 cut(s)	723, 1047, 1176, 1302, 1327, 1331
Sau96I	GGNCC	2 cut(s)	979, 1204
ScrFI	CCNGG	2 cut(s)	233, 977
SduI	GDGCHC	1 cut(s)	974
SfaNI	GCATC	3 cut(s)	76, 370, 421
SinI	GGWCC	1 cut(s)	1204
SsiI	CCGC	1 cut(s)	1268
SspMI	CTAG	2 cut(s)	482, 797
StyD4I	CCNGG	2 cut(s)	231, 975
StyI	CCWWGG	2 cut(s)	850, 996
TaaI	ACNGT	3 cut(s)	782, 1254, 1318
TaiI	ACGT	2 cut(s)	1055, 1347
TaqI	TCGA	3 cut(s)	468, 1041, 1330
TfiI	GAWTC	2 cut(s)	581, 800
Tru1I	TTAA	2 cut(s)	276, 1230
Tru9I	TTAA	2 cut(s)	276, 1230
TscAI	CASTG	1 cut(s)	1323
TseFI	GTSAC	1 cut(s)	190
TseI	GCWGC	8 cut(s)	5, 102, 141, 236, 325, 458, 1156, 1355
Tsp45I	GTSAC	1 cut(s)	190
TspDTI	ATGAA	8 cut(s)	145, 320, 357, 423, 555, 582, 1026, 1112
TspGWI	ACGGA	1 cut(s)	439
TspRI	CASTG	1 cut(s)	1323
VpaK11BI	GGWCC	1 cut(s)	1204
VspI	ATTAAT	1 cut(s)	1230
XagI	CCTNNNNNAGG	1 cut(s)	395
XapI	RAATTY	2 cut(s)	509, 770
XbaI	TCTAGA	1 cut(s)	796
XceI	RCATGY	2 cut(s)	76, 610
XmnI	GAANNNNTTC	2 cut(s)	573, 754
XspI	CTAG	2 cut(s)	482, 797

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.