Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr7

Orthogroup ID

OG0009192

Physical Location & Seq

Genomic Coordinates Reverse (-)

26617452 .. 26617733

Gene Structure 282 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom07g26620.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 282 bp

ATGAATTTGACAGGTGCTTGTGGAGGAAAGGAAGGCCGAGAGCTGCTGGAGGAATGTCTGATGATCATAGAGAGACTTAAGGGTAAAGAGGACCCGAGCTCAGCGACACACCTTATTAATCTTGCAACTTCGCATTCACGCTCAAAGAATTATGTGGAGGCTGAGCGCTTGCTGAGGGCAAGTGTGCAGATCTTAGCAAAGACAGTGGGGCCTGATGAACAATCCATCACGTTCCCAATGCTGCACCTCGCCCTTACACTTGAAACGGGACGAAGAAGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TPR_10 TPR_12 TPR_8

Protein Analysis

94

Amino Acids

10.3

Weight (kDa)

7.84

Isoelectric Point (pI)

61.71

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TPR_12	PF13424	11 - 65	1.8e-08	Tetratricopeptide repeat
TPR_10	PF13374	35 - 72	4.4e-06	Tetratricopeptide repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0009192)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G53080
fragaria_vesca	FvH4_7g31990
malus_domestica	MD01G1222800.v1.1
prunus_persica	Prupe.2G313200_v2.0.a1 Prupe.2G313200_v2.0.a1 Prupe.2G313200_v2.0.a1 Prupe.2G313200_v2.0.a1 Prupe.2G313200_v2.0.a1 Prupe.2G313200_v2.0.a1 Prupe.2G313200_v2.0.a1
pyrus_communis	pycom01g23220 pycom07g26620
rosa_chinensis	RchiOBHm_Chr1g0381501
rosa_laevigata	RLG00000026227
rosa_multiflora	Rmu_sc0003688.1_g000009
rosa_roxburghii	Rroxscaffold_4G00278610
rosa_rugosa	Rorug01G0429000
rosa_samantha	Rh1AG452200 Rh1BG409500 Rh1CG424000 Rh1DG440800
rosa_wichuraiana	Rw1G039480

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcsI	RAATTY	1 cut(s)	4
AfeI	AGCGCT	1 cut(s)	167
AflII	CTTAAG	1 cut(s)	77
AgsI	TTSAA	1 cut(s)	263
AluBI	AGCT	2 cut(s)	43, 99
AluI	AGCT	2 cut(s)	43, 99
Alw21I	GWGCWC	1 cut(s)	101
Alw26I	GTCTC	1 cut(s)	67
Ama87I	CYCGRG	1 cut(s)	94
Aor51HI	AGCGCT	1 cut(s)	167
AoxI	GGCC	2 cut(s)	34, 209
ApeKI	GCWGC	2 cut(s)	43, 241
ApoI	RAATTY	1 cut(s)	4
AseI	ATTAAT	1 cut(s)	117
AspLEI	GCGC	1 cut(s)	168
AspS9I	GGNCC	2 cut(s)	91, 209
AvaI	CYCGRG	1 cut(s)	94
AvaII	GGWCC	1 cut(s)	91
BanII	GRGCYC	1 cut(s)	101
Bbv12I	GWGCWC	1 cut(s)	101
BbvCI	CCTCAGC	1 cut(s)	173
BbvI	GCAGC	2 cut(s)	30, 228
BccI	CCATC	1 cut(s)	233
BclI	TGATCA	1 cut(s)	63
BcoDI	GTCTC	1 cut(s)	67
BfoI	RGCGCY	1 cut(s)	169
BfrI	CTTAAG	1 cut(s)	77
BglII	AGATCT	1 cut(s)	189
BisI	GCNGC	2 cut(s)	44, 242
BlpI	GCTNAGC	2 cut(s)	100, 162
BlsI	GCNGC	2 cut(s)	45, 243
Bme18I	GGWCC	1 cut(s)	91
BmeT110I	CYCGRG	1 cut(s)	94
BmgT120I	GGNCC	2 cut(s)	91, 209
BmiI	GGNNCC	2 cut(s)	93, 210
BpmI	CTGGAG	1 cut(s)	68
Bpu10I	CCTNAGC	1 cut(s)	173
Bpu1102I	GCTNAGC	2 cut(s)	100, 162
BseMII	CTCAG	3 cut(s)	114, 153, 164
BseXI	GCAGC	2 cut(s)	30, 228
BsgI	GTGCAG	2 cut(s)	206, 227
BshFI	GGCC	2 cut(s)	36, 211
BsiHKAI	GWGCWC	1 cut(s)	101
BsiHKCI	CYCGRG	1 cut(s)	94
BsmAI	GTCTC	1 cut(s)	67
BsmI	GAATGC	1 cut(s)	133
BsnI	GGCC	2 cut(s)	36, 211
BsoBI	CYCGRG	1 cut(s)	94
Bsp1286I	GDGCHC	1 cut(s)	101
Bsp143I	GATC	2 cut(s)	63, 189
Bsp1720I	GCTNAGC	2 cut(s)	100, 162
BspANI	GGCC	2 cut(s)	36, 211
BspCNI	CTCAG	3 cut(s)	113, 154, 165
BspLI	GGNNCC	2 cut(s)	93, 210
BspTI	CTTAAG	1 cut(s)	77
BssMI	GATC	2 cut(s)	63, 189
Bst4CI	ACNGT	1 cut(s)	205
BstAFI	CTTAAG	1 cut(s)	77
BstC8I	GCNNGC	1 cut(s)	170
BstDEI	CTNAG	4 cut(s)	100, 162, 173, 193
BstH2I	RGCGCY	1 cut(s)	169
BstHHI	GCGC	1 cut(s)	168
BstKTI	GATC	2 cut(s)	66, 192
BstMAI	GTCTC	1 cut(s)	67
BstMBI	GATC	2 cut(s)	63, 189
BstV1I	GCAGC	2 cut(s)	30, 228
BstX2I	RGATCY	1 cut(s)	189
BstYI	RGATCY	1 cut(s)	189
BsuRI	GGCC	2 cut(s)	36, 211
BtsIMutI	CAGTG	1 cut(s)	210
Cac8I	GCNNGC	1 cut(s)	170
CfoI	GCGC	1 cut(s)	168
Cfr13I	GGNCC	2 cut(s)	91, 209
CspCI	CAANNNNNGTGG	2 cut(s)	186, 221
CviJI	RGCY	5 cut(s)	36, 43, 99, 161, 211
CviKI_1	RGCY	5 cut(s)	36, 43, 99, 161, 211
DdeI	CTNAG	4 cut(s)	100, 162, 173, 193
DpnI	GATC	2 cut(s)	65, 191
DpnII	GATC	2 cut(s)	63, 189
Ecl136II	GAGCTC	1 cut(s)	99
Eco24I	GRGCYC	1 cut(s)	101
Eco47I	GGWCC	1 cut(s)	91
Eco47III	AGCGCT	1 cut(s)	167
Eco53kI	GAGCTC	1 cut(s)	99
Eco88I	CYCGRG	1 cut(s)	94
EcoICRI	GAGCTC	1 cut(s)	99
EcoO109I	RGGNCCY	2 cut(s)	91, 209
EcoT38I	GRGCYC	1 cut(s)	101
FaiI	YATR	2 cut(s)	68, 153
FbaI	TGATCA	1 cut(s)	63
Fnu4HI	GCNGC	2 cut(s)	44, 242
FriOI	GRGCYC	1 cut(s)	101
Fsp4HI	GCNGC	2 cut(s)	44, 242
GlaI	GCGC	1 cut(s)	167
GluI	GCNGC	2 cut(s)	44, 242
GsuI	CTGGAG	1 cut(s)	68
HaeII	RGCGCY	1 cut(s)	169
HaeIII	GGCC	2 cut(s)	36, 211
HhaI	GCGC	1 cut(s)	168
Hin6I	GCGC	1 cut(s)	166
HinP1I	GCGC	1 cut(s)	166
Hpy188I	TCNGA	1 cut(s)	60
HpyAV	CCTTC	1 cut(s)	26
HpyCH4III	ACNGT	1 cut(s)	205
HpyCH4IV	ACGT	1 cut(s)	230
HpyCH4V	TGCA	3 cut(s)	125, 187, 244
HpyF3I	CTNAG	4 cut(s)	100, 162, 173, 193
HpySE526I	ACGT	1 cut(s)	230
HspAI	GCGC	1 cut(s)	166
Ksp22I	TGATCA	1 cut(s)	63
Kzo9I	GATC	2 cut(s)	63, 189
LpnPI	CCDG	2 cut(s)	32, 225
Lsp1109I	GCAGC	2 cut(s)	30, 228
MaeII	ACGT	1 cut(s)	230
MalI	GATC	2 cut(s)	65, 191
MboI	GATC	2 cut(s)	63, 189
MflI	RGATCY	1 cut(s)	189
MhlI	GDGCHC	1 cut(s)	101
MluCI	AATT	2 cut(s)	4, 148
MnlI	CCTC	6 cut(s)	17, 43, 82, 151, 168, 257
MseI	TTAA	2 cut(s)	78, 117
MspCI	CTTAAG	1 cut(s)	77
Mva1269I	GAATGC	1 cut(s)	133
NdeII	GATC	2 cut(s)	63, 189
NlaIV	GGNNCC	2 cut(s)	93, 210
NmeAIII	GCCGAG	1 cut(s)	62
PctI	GAATGC	1 cut(s)	133
PkrI	GCNGC	2 cut(s)	45, 243
PpuMI	RGGWCCY	1 cut(s)	91
PshBI	ATTAAT	1 cut(s)	117
Psp124BI	GAGCTC	1 cut(s)	101
Psp5II	RGGWCCY	1 cut(s)	91
PspN4I	GGNNCC	2 cut(s)	93, 210
PspPI	GGNCC	2 cut(s)	91, 209
PspPPI	RGGWCCY	1 cut(s)	91
PsuI	RGATCY	1 cut(s)	189
SacI	GAGCTC	1 cut(s)	101
SaqAI	TTAA	2 cut(s)	78, 117
SatI	GCNGC	2 cut(s)	44, 242
Sau3AI	GATC	2 cut(s)	63, 189
Sau96I	GGNCC	2 cut(s)	91, 209
SduI	GDGCHC	1 cut(s)	101
SetI	ASST	6 cut(s)	16, 45, 101, 114, 233, 249
SinI	GGWCC	1 cut(s)	91
SmlI	CTYRAG	1 cut(s)	77
SmoI	CTYRAG	1 cut(s)	77
Sse9I	AATT	2 cut(s)	4, 148
SstI	GAGCTC	1 cut(s)	101
TaaI	ACNGT	1 cut(s)	205
TaiI	ACGT	1 cut(s)	233
TasI	AATT	2 cut(s)	4, 148
Tru1I	TTAA	2 cut(s)	78, 117
Tru9I	TTAA	2 cut(s)	78, 117
TscAI	CASTG	1 cut(s)	210
TseI	GCWGC	2 cut(s)	43, 241
TspDTI	ATGAA	2 cut(s)	17, 231
TspRI	CASTG	1 cut(s)	210
Vha464I	CTTAAG	1 cut(s)	77
VpaK11BI	GGWCC	1 cut(s)	91
VspI	ATTAAT	1 cut(s)	117
XapI	RAATTY	1 cut(s)	4

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.