Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003688.1

Orthogroup ID

OG0009192

Physical Location & Seq

Genomic Coordinates Reverse (-)

35571 .. 38760

Gene Structure 3190 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0003688.1_g000009.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1644 bp

atggcagcttctcttcttctcccttctcacttcttgaacacctacaggataagcaaactgtgcttacatcacatgcagtcagcaaactcacacaaaggcataacttgcttattccctgttagagcactggcctcaaggtcttttgcttctgttgggtcagtagaaaatcatgtttcagctccaaacaaaactcacaggtctgaaggttctaaaacatccgatgggacggagaatgatttcgagagagagttacaagagttgtttgatgaagtgaaaatgttggttatgaacgggaataaagatgatgcagtagacttgcttcgagcgaattatgaggctgtgaaggagaggatggatgccggtgttagaggcattgaggaagctgctaccattgacatcatagctctagggtatatggctattggcgactttaagtttgtcgagtcattactggatatgttgaatgagattgttggcagtctaaaggatgatgaaccactgctggattcagttctggtgcatatgggaagcatgtattcaactttggcgaagtttgagaaatcaatgcttgtatataggagggcaattgataacatggagaacatgtatgggaaaaatagtgtttttcttatcacaccaattttgggcatggcgaaagttctcagttctattggaaggactacaaaagcagtagagttataccatcgtgcaataactcttcttgaatctagcagaggtgctgaaagtgaggatttggtcatacctttgtttggtcttggcagccttttactcaaacaagggaaacctattgaggcagaaactccttttctaagaattttaaatatatacacaaagttgtatggagaagacgacggaagagttggaatggctatgagttccctggcccatgcgaagtgtgcaatgggaaaggcaaatgaagcaattgatttatataaaaaggctcttaaagtcatcaaggattccaattatatggcttcagatgacagcatagtggagaagatgcggatagatttggcagaattacttcatgctgttggaaggggaaaggaaggccgagagctactggaggaatgcttgctgatcactgagaaacacaaaggcaaagaggaccccagctcagtgacacaccttatcaatctcgcaacttcgcattcgcgctcaaagaactatgtggaggctgagcgcttgctgaggacgagtttgcaggtcttggcaaagacagtggcacccgatgaccaatccatctcgttcccaatgttgcacctcgccgttactctctaccaattaaaacgggatgaagaagcagaacagctcgccctccaggctttgcacattcgtgagaaagcattcggaaaggactcccttcccgttgcggaggctctcgactgtctggtgtcaatccaaactagattaacgagagacgacgaagcgttactagagcagctgaagagggtgttgagcatccaagagaaagagttcggccccgagagcaaggaggttttgacaaccctaaaaaaagttgtacattacttagacaaactaggcaggaaaaacgacaagctcctcttgcagaaaaggctctccgcccttagatcaaaattcaagcaacaaatccaacaataa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TPR_10 TPR_12 TPR_8

Protein Analysis

547

Amino Acids

61.1

Weight (kDa)

6.49

Isoelectric Point (pI)

42.83

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009192)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G53080
fragaria_vesca	FvH4_7g31990
malus_domestica	MD01G1222800.v1.1
prunus_persica	Prupe.2G313200_v2.0.a1 Prupe.2G313200_v2.0.a1 Prupe.2G313200_v2.0.a1 Prupe.2G313200_v2.0.a1 Prupe.2G313200_v2.0.a1 Prupe.2G313200_v2.0.a1 Prupe.2G313200_v2.0.a1
pyrus_communis	pycom01g23220 pycom07g26620
rosa_chinensis	RchiOBHm_Chr1g0381501
rosa_laevigata	RLG00000026227
rosa_multiflora	Rmu_sc0003688.1_g000009
rosa_roxburghii	Rroxscaffold_4G00278610
rosa_rugosa	Rorug01G0429000
rosa_samantha	Rh1AG452200 Rh1BG409500 Rh1CG424000 Rh1DG440800
rosa_wichuraiana	Rw1G039480

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	1216
AccB1I	GGYRCC	1 cut(s)	1246
AccI	GTMKAC	1 cut(s)	312
AccII	CGCG	1 cut(s)	1177
AciI	CCGC	3 cut(s)	1024, 1394, 1605
AcsI	RAATTY	2 cut(s)	834, 1619
AcuI	CTGAAG	3 cut(s)	222, 981, 1487
AfaI	GTAC	1 cut(s)	1545
AfeI	AGCGCT	1 cut(s)	1205
AfiI	CCNNNNNNNGG	2 cut(s)	644, 770
AflIII	ACRYGT	1 cut(s)	603
AgsI	TTSAA	5 cut(s)	37, 463, 540, 725, 1624
AjnI	CCWGG	2 cut(s)	900, 1341
AleI	CACNNNNGTG	1 cut(s)	1356
AluBI	AGCT	9 cut(s)	8, 179, 383, 404, 1081, 1137, 1333, 1465, 1582
AluI	AGCT	9 cut(s)	8, 179, 383, 404, 1081, 1137, 1333, 1465, 1582
Alw21I	GWGCWC	1 cut(s)	127
Alw26I	GTCTC	1 cut(s)	1434
Ama87I	CYCGRG	1 cut(s)	1505
Aor51HI	AGCGCT	1 cut(s)	1205
AoxI	GGCC	4 cut(s)	129, 903, 1072, 1501
ApeKI	GCWGC	4 cut(s)	5, 383, 780, 1462
ApoI	RAATTY	2 cut(s)	834, 1619
ArsI	GACNNNNNNTTYG	2 cut(s)	419, 451
Asp700I	GAANNNNTTC	4 cut(s)	236, 1044, 1367, 1496
AspLEI	GCGC	2 cut(s)	1179, 1206
AspS9I	GGNCC	3 cut(s)	904, 1129, 1502
AvaI	CYCGRG	1 cut(s)	1505
AvaII	GGWCC	1 cut(s)	1129
BanI	GGYRCC	1 cut(s)	1246
BarI	GAAGNNNNNNTAC	2 cut(s)	303, 335
BbsI	GAAGAC	1 cut(s)	873
Bbv12I	GWGCWC	1 cut(s)	127
BbvCI	CCTCAGC	1 cut(s)	1211
BbvI	GCAGC	4 cut(s)	17, 370, 792, 1474
BccI	CCATC	4 cut(s)	215, 346, 711, 1271
BceAI	ACGGC	1 cut(s)	1274
BciT130I	CCWGG	2 cut(s)	902, 1343
BclI	TGATCA	1 cut(s)	1101
BcoDI	GTCTC	1 cut(s)	1434
BfaI	CTAG	5 cut(s)	407, 729, 1428, 1457, 1562
BfmI	CTRYAG	1 cut(s)	43
BfoI	RGCGCY	1 cut(s)	1207
BfuAI	ACCTGC	1 cut(s)	1216
BglI	GCCNNNNNGGC	1 cut(s)	1343
BisI	GCNGC	4 cut(s)	6, 384, 781, 1463
BlpI	GCTNAGC	1 cut(s)	1200
BlsI	GCNGC	4 cut(s)	7, 385, 782, 1464
Bme1390I	CCNGG	2 cut(s)	902, 1343
Bme18I	GGWCC	1 cut(s)	1129
BmeT110I	CYCGRG	1 cut(s)	1505
BmgT120I	GGNCC	3 cut(s)	904, 1129, 1502
BmiI	GGNNCC	3 cut(s)	1131, 1248, 1504
BmrFI	CCNGG	2 cut(s)	902, 1343
BmsI	GCATC	4 cut(s)	295, 346, 1011, 1491
BpiI	GAAGAC	1 cut(s)	873
BpmI	CTGGAG	2 cut(s)	1106, 1325
Bpu10I	CCTNAGC	1 cut(s)	1211
Bpu1102I	GCTNAGC	1 cut(s)	1200
BpuEI	CTTGAG	1 cut(s)	118
BsaJI	CCNNGG	1 cut(s)	900
BsaXI	ACNNNNNCTCC	2 cut(s)	590, 620
Bsc4I	CCNNNNNNNGG	2 cut(s)	644, 770
Bse118I	RCCGGY	1 cut(s)	359
Bse1I	ACTGG	3 cut(s)	132, 456, 1089
Bse3DI	GCAATG	1 cut(s)	927
BseBI	CCWGG	2 cut(s)	902, 1343
BseDI	CCNNGG	1 cut(s)	900
BseGI	GGATG	6 cut(s)	215, 357, 361, 493, 1321, 1482
BseLI	CCNNNNNNNGG	2 cut(s)	644, 770
BseMI	GCAATG	1 cut(s)	927
BseMII	CTCAG	5 cut(s)	676, 1098, 1152, 1191, 1202
BseNI	ACTGG	3 cut(s)	132, 456, 1089
BseRI	GAGGAG	1 cut(s)	1574
BseXI	GCAGC	4 cut(s)	17, 370, 792, 1474
BseYI	CCCAGC	1 cut(s)	1133
Bsh1236I	CGCG	1 cut(s)	1177
BshFI	GGCC	4 cut(s)	131, 905, 1074, 1503
BshNI	GGYRCC	1 cut(s)	1246
BsiHKAI	GWGCWC	1 cut(s)	127
BsiHKCI	CYCGRG	1 cut(s)	1505
BsiSI	CCGG	1 cut(s)	360
BslFI	GGGAC	1 cut(s)	238
BslI	CCNNNNNNNGG	2 cut(s)	644, 770
BsmAI	GTCTC	1 cut(s)	1434
BsmBI	CGTCTC	1 cut(s)	1434
BsmFI	GGGAC	1 cut(s)	238
BsmI	GAATGC	3 cut(s)	1097, 1171, 1367
BsnI	GGCC	4 cut(s)	131, 905, 1074, 1503
BsoBI	CYCGRG	1 cut(s)	1505
Bsp1286I	GDGCHC	1 cut(s)	127
Bsp1407I	TGTACA	1 cut(s)	1543
Bsp143I	GATC	2 cut(s)	1101, 1613
Bsp1720I	GCTNAGC	1 cut(s)	1200
BspACI	CCGC	3 cut(s)	1024, 1394, 1605
BspANI	GGCC	4 cut(s)	131, 905, 1074, 1503
BspCNI	CTCAG	5 cut(s)	675, 1099, 1151, 1192, 1203
BspFNI	CGCG	1 cut(s)	1177
BspLI	GGNNCC	3 cut(s)	1131, 1248, 1504
BspMI	ACCTGC	1 cut(s)	1216
BspT107I	GGYRCC	1 cut(s)	1246
BsrDI	GCAATG	1 cut(s)	927
BsrFI	RCCGGY	1 cut(s)	359
BsrGI	TGTACA	1 cut(s)	1543
BsrI	ACTGG	3 cut(s)	132, 456, 1089
BssAI	RCCGGY	1 cut(s)	359
BssECI	CCNNGG	1 cut(s)	900
BssMI	GATC	2 cut(s)	1101, 1613
Bst2UI	CCWGG	2 cut(s)	902, 1343
Bst4CI	ACNGT	3 cut(s)	60, 1243, 1409
Bst6I	CTCTTC	4 cut(s)	18, 723, 871, 1463
BstAPI	GCANNNNNTGC	2 cut(s)	60, 105
BstAUI	TGTACA	1 cut(s)	1543
BstC8I	GCNNGC	3 cut(s)	1097, 1208, 1335
BstDEI	CTNAG	8 cut(s)	662, 830, 1107, 1138, 1200, 1211, 1552, 1610
BstF5I	GGATG	6 cut(s)	215, 357, 361, 493, 1321, 1482
BstFNI	CGCG	1 cut(s)	1177
BstH2I	RGCGCY	1 cut(s)	1207
BstHHI	GCGC	2 cut(s)	1179, 1206
BstKTI	GATC	2 cut(s)	1104, 1616
BstMAI	GTCTC	1 cut(s)	1434
BstMBI	GATC	2 cut(s)	1101, 1613
BstMWI	GCNNNNNNNGC	8 cut(s)	60, 105, 917, 938, 1343, 1509, 1588, 1597
BstNI	CCWGG	2 cut(s)	902, 1343
BstNSI	RCATGY	3 cut(s)	76, 535, 607
BstSCI	CCNGG	2 cut(s)	900, 1341
BstSFI	CTRYAG	1 cut(s)	43
BstUI	CGCG	1 cut(s)	1177
BstV1I	GCAGC	4 cut(s)	17, 370, 792, 1474
BstV2I	GAAGAC	1 cut(s)	873
BstXI	CCANNNNNNTGG	1 cut(s)	991
BsuRI	GGCC	4 cut(s)	131, 905, 1074, 1503
BtsCI	GGATG	6 cut(s)	215, 357, 361, 493, 1321, 1482
BtsI	GCAGTG	1 cut(s)	497
BtsIMutI	CAGTG	5 cut(s)	125, 497, 1104, 1146, 1248
BveI	ACCTGC	1 cut(s)	1216
Cac8I	GCNNGC	3 cut(s)	1097, 1208, 1335
CfoI	GCGC	2 cut(s)	1179, 1206
Cfr10I	RCCGGY	1 cut(s)	359
Cfr13I	GGNCC	3 cut(s)	904, 1129, 1502
Csp6I	GTAC	1 cut(s)	1544
CspCI	CAANNNNNGTGG	2 cut(s)	1224, 1259
CviAII	CATG	8 cut(s)	73, 170, 532, 595, 604, 649, 908, 1049
CviQI	GTAC	1 cut(s)	1544
DdeI	CTNAG	8 cut(s)	662, 830, 1107, 1138, 1200, 1211, 1552, 1610
DpnI	GATC	2 cut(s)	1103, 1615
DpnII	GATC	2 cut(s)	1101, 1613
DraI	TTTAAA	1 cut(s)	840
Eam1104I	CTCTTC	4 cut(s)	18, 723, 871, 1463
EarI	CTCTTC	4 cut(s)	18, 723, 871, 1463
EciI	GGCGGA	1 cut(s)	1594
Eco47I	GGWCC	1 cut(s)	1129
Eco47III	AGCGCT	1 cut(s)	1205
Eco57I	CTGAAG	3 cut(s)	222, 981, 1487
Eco88I	CYCGRG	1 cut(s)	1505
EcoO109I	RGGNCCY	1 cut(s)	1129
EcoRII	CCWGG	2 cut(s)	900, 1341
Esp3I	CGTCTC	1 cut(s)	1434
FaeI	CATG	8 cut(s)	76, 173, 535, 598, 607, 652, 911, 1052
FalI	AAGNNNNNCTT	2 cut(s)	1571, 1603
FaqI	GGGAC	1 cut(s)	238
FatI	CATG	8 cut(s)	72, 169, 531, 594, 603, 648, 907, 1048
FauNDI	CATATG	1 cut(s)	522
FbaI	TGATCA	1 cut(s)	1101
FblI	GTMKAC	1 cut(s)	312
Fnu4HI	GCNGC	4 cut(s)	6, 384, 781, 1463
FokI	GGATG	6 cut(s)	202, 364, 368, 500, 1328, 1469
Fsp4HI	GCNGC	4 cut(s)	6, 384, 781, 1463
FspBI	CTAG	5 cut(s)	407, 729, 1428, 1457, 1562
GlaI	GCGC	2 cut(s)	1178, 1205
GluI	GCNGC	4 cut(s)	6, 384, 781, 1463
GsaI	CCCAGC	1 cut(s)	1137
GsuI	CTGGAG	2 cut(s)	1106, 1325
HaeII	RGCGCY	1 cut(s)	1207
HaeIII	GGCC	4 cut(s)	131, 905, 1074, 1503
HapII	CCGG	1 cut(s)	360
HhaI	GCGC	2 cut(s)	1179, 1206
Hin1II	CATG	8 cut(s)	76, 173, 535, 598, 607, 652, 911, 1052
Hin6I	GCGC	2 cut(s)	1177, 1204
HinP1I	GCGC	2 cut(s)	1177, 1204
HinfI	GANTC	5 cut(s)	443, 506, 725, 980, 1379
HpaII	CCGG	1 cut(s)	360
Hpy166II	GTNNAC	1 cut(s)	313
Hpy188I	TCNGA	4 cut(s)	202, 220, 1000, 1373
Hpy188III	TCNNGA	5 cut(s)	34, 241, 722, 1358, 1403
Hpy8I	GTNNAC	1 cut(s)	313
Hpy99I	CGWCG	2 cut(s)	875, 1448
HpyAV	CCTTC	7 cut(s)	33, 197, 337, 669, 1053, 1064, 1394
HpyCH4III	ACNGT	3 cut(s)	60, 1243, 1409
HpyCH4V	TGCA	9 cut(s)	76, 308, 520, 710, 920, 1225, 1282, 1351, 1591
HpyF10VI	GCNNNNNNNGC	8 cut(s)	60, 105, 917, 938, 1343, 1509, 1588, 1597
HpyF3I	CTNAG	8 cut(s)	662, 830, 1107, 1138, 1200, 1211, 1552, 1610
Hsp92II	CATG	8 cut(s)	76, 173, 535, 598, 607, 652, 911, 1052
HspAI	GCGC	2 cut(s)	1177, 1204
Ksp22I	TGATCA	1 cut(s)	1101
Kzo9I	GATC	2 cut(s)	1101, 1613
LmnI	GCTCC	2 cut(s)	184, 1587
Lsp1109I	GCAGC	4 cut(s)	17, 370, 792, 1474
LweI	GCATC	4 cut(s)	295, 346, 1011, 1491
MaeI	CTAG	5 cut(s)	407, 729, 1428, 1457, 1562
MaeIII	GTNAC	4 cut(s)	249, 1141, 1291, 1452
MalI	GATC	2 cut(s)	1103, 1615
MboI	GATC	2 cut(s)	1101, 1613
MboII	GAAGA	8 cut(s)	5, 8, 710, 878, 888, 1030, 1331, 1480
MfeI	CAATTG	2 cut(s)	585, 942
MhlI	GDGCHC	1 cut(s)	127
MluCI	AATT	9 cut(s)	328, 585, 639, 834, 942, 985, 1040, 1304, 1619
MlyI	GAGTC	2 cut(s)	452, 1373
MmeI	TCCRAC	2 cut(s)	862, 1036
MroXI	GAANNNNTTC	4 cut(s)	236, 1044, 1367, 1496
MseI	TTAA	5 cut(s)	432, 839, 966, 1307, 1433
MslI	CAYNNNNRTG	1 cut(s)	1356
MspA1I	CMGCKG	1 cut(s)	1465
MspI	CCGG	1 cut(s)	360
MspR9I	CCNGG	2 cut(s)	902, 1343
MunI	CAATTG	2 cut(s)	585, 942
Mva1269I	GAATGC	3 cut(s)	1097, 1171, 1367
MvaI	CCWGG	2 cut(s)	902, 1343
MvnI	CGCG	1 cut(s)	1177
MwoI	GCNNNNNNNGC	8 cut(s)	60, 105, 917, 938, 1343, 1509, 1588, 1597
NdeI	CATATG	1 cut(s)	522
NdeII	GATC	2 cut(s)	1101, 1613
NlaIII	CATG	8 cut(s)	76, 173, 535, 598, 607, 652, 911, 1052
NlaIV	GGNNCC	3 cut(s)	1131, 1248, 1504
NmeAIII	GCCGAG	1 cut(s)	1100
NmuCI	GTSAC	1 cut(s)	1141
NspI	RCATGY	3 cut(s)	76, 535, 607
OliI	CACNNNNGTG	1 cut(s)	1356
PciI	ACATGT	1 cut(s)	603
PctI	GAATGC	3 cut(s)	1097, 1171, 1367
PdmI	GAANNNNTTC	4 cut(s)	236, 1044, 1367, 1496
PfeI	GAWTC	3 cut(s)	506, 725, 980
PkrI	GCNGC	4 cut(s)	7, 385, 782, 1464
PleI	GAGTC	2 cut(s)	451, 1373
PpsI	GAGTC	2 cut(s)	451, 1373
PpuMI	RGGWCCY	1 cut(s)	1129
PscI	ACATGT	1 cut(s)	603
Psp5II	RGGWCCY	1 cut(s)	1129
Psp6I	CCWGG	2 cut(s)	900, 1341
PspFI	CCCAGC	1 cut(s)	1133
PspGI	CCWGG	2 cut(s)	900, 1341
PspN4I	GGNNCC	3 cut(s)	1131, 1248, 1504
PspPI	GGNCC	3 cut(s)	904, 1129, 1502
PspPPI	RGGWCCY	1 cut(s)	1129
PvuII	CAGCTG	1 cut(s)	1465
RsaI	GTAC	1 cut(s)	1545
RsaNI	GTAC	1 cut(s)	1544
RseI	CAYNNNNRTG	1 cut(s)	1356
SaqAI	TTAA	5 cut(s)	432, 839, 966, 1307, 1433
SatI	GCNGC	4 cut(s)	6, 384, 781, 1463
Sau3AI	GATC	2 cut(s)	1101, 1613
Sau96I	GGNCC	3 cut(s)	904, 1129, 1502
SchI	GAGTC	2 cut(s)	452, 1373
ScrFI	CCNGG	2 cut(s)	902, 1343
SduI	GDGCHC	1 cut(s)	127
SfaNI	GCATC	4 cut(s)	295, 346, 1011, 1491
SfcI	CTRYAG	1 cut(s)	43
SinI	GGWCC	1 cut(s)	1129
SmiMI	CAYNNNNRTG	1 cut(s)	1356
SmlI	CTYRAG	1 cut(s)	133
SmoI	CTYRAG	1 cut(s)	133
Sse9I	AATT	9 cut(s)	328, 585, 639, 834, 942, 985, 1040, 1304, 1619
SsiI	CCGC	3 cut(s)	1024, 1394, 1605
SspMI	CTAG	5 cut(s)	407, 729, 1428, 1457, 1562
StyD4I	CCNGG	2 cut(s)	900, 1341
TaaI	ACNGT	3 cut(s)	60, 1243, 1409
TaqI	TCGA	4 cut(s)	240, 322, 441, 1404
TasI	AATT	9 cut(s)	328, 585, 639, 834, 942, 985, 1040, 1304, 1619
TatI	WGTACW	1 cut(s)	1543
TfiI	GAWTC	3 cut(s)	506, 725, 980
Tru1I	TTAA	5 cut(s)	432, 839, 966, 1307, 1433
Tru9I	TTAA	5 cut(s)	432, 839, 966, 1307, 1433
TscAI	CASTG	5 cut(s)	132, 504, 1111, 1146, 1248
TseFI	GTSAC	1 cut(s)	1141
TseI	GCWGC	4 cut(s)	5, 383, 780, 1462
Tsp45I	GTSAC	1 cut(s)	1141
TspDTI	ATGAA	6 cut(s)	282, 302, 507, 951, 1037, 1332
TspGWI	ACGGA	2 cut(s)	242, 888
TspRI	CASTG	5 cut(s)	132, 504, 1111, 1146, 1248
VpaK11BI	GGWCC	1 cut(s)	1129
XapI	RAATTY	2 cut(s)	834, 1619
XceI	RCATGY	3 cut(s)	76, 535, 607
XmiI	GTMKAC	1 cut(s)	312
XmnI	GAANNNNTTC	4 cut(s)	236, 1044, 1367, 1496
XspI	CTAG	5 cut(s)	407, 729, 1428, 1457, 1562

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.