Rorug01G0429000

Tetratricopeptide repeat

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000001
OG0009192
Physical Location & Seq
Forward (+)
52798012 .. 52799704
1693 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug01G0429000.1

Sequence Viewer

Length: 903 bp
ATGGCTGTATCTAAGAAAGAATCGATGCTAGTTAACGAGGAGGAACTGGAAGACGATAGTGATATGGGGGACGATGTGTCTGAGTCAGAATTGGAACAAGAATCGGAAGAGGAATCTGAGGAGGAAGGAGATGTGAGATTGGCTGAACCTGCCCAGAATGCTACATACAATAGAGATGGTCTGTTAGAGAAGCTTGGAGATATGAGCTGGCCGGAGAATGCTAAATGGGTGGACAGGCTTACGTTGGATATTGAGCAAGAGCAACCGGTGGATGTGAATGATGACCTGACAAGGGAGCTTGCGTTTTATACACAGGCTCTAAATGGAACGAGGATGGCCTTTGAGAAGCTTCAGTCAATGGGGCTTCCGTTTCTGAGACCTGAGGACTACTATGCGGAAATGGTGAAGTCGGATTCCCACATGGAGAAAGTGAAGAGCCGGCTTTTGGTGGAGAAGAAGAACATGGAGGAAGCTGATGAGAGAAGGAAGGCCAGAGAGGCCAAGAAATTGTCTAAAGAGATTCAGAACCAGAAGTTGAAGGAGAGAGCTAAGCAGAAAAAGGAGTCTATTGAGTCTGTGAAGAAGTGGAGGAAGCAGAGGCAGCAAAGTGGGTTTGCTGGGGGTGACAAAGGAAGTGAGTTGGATTTGGCCTTTGAAGATGGGAAACCATTTGAAAAGTCAAGTAATAAGAGGCCTGGTGTAGCTCCCGGAGATCGGTCTGGAGGGAAGGCAAAATATGCTGGAAAGGGGAAGAAGCCAAAGAAGAGAGAAATCAAGGATTCCAAGTTTGGATTTGGTGGGAGGAAAGGTTCCAGGAAGCAAAATGTCGCTGAAACCACCAATGATTTGAGAGGCTTCAATAAAGAAGATGGTTTCTCAAAAAATAAGAAAAGGAAGATGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
TPR_10 TPR_12 TPR_8

Protein Analysis

300

Amino Acids

34.26

Weight (kDa)

6.23

Isoelectric Point (pI)

62.23

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ebp2 PF05890 56 - 296 2.7e-67 Eukaryotic rRNA processing protein EBP2
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 157
AciI CCGC 1 cut(s) 395
AcoI YGGCCR 1 cut(s) 209
AcuI CTGAAG 1 cut(s) 335
AfiI CCNNNNNNNGG 3 cut(s) 292, 445, 714
AgeI ACCGGT 1 cut(s) 265
AgsI TTSAA 4 cut(s) 538, 656, 674, 859
AhdI GACNNNNNGTC 1 cut(s) 76
AjnI CCWGG 2 cut(s) 694, 812
AloI GAACNNNNNNTCC 2 cut(s) 793, 825
AluBI AGCT 7 cut(s) 193, 207, 298, 349, 473, 548, 704
AluI AGCT 7 cut(s) 193, 207, 298, 349, 473, 548, 704
Alw26I GTCTC 1 cut(s) 370
AoxI GGCC 6 cut(s) 209, 336, 489, 498, 648, 692
ApeKI GCWGC 1 cut(s) 601
AsiGI ACCGGT 1 cut(s) 265
AsuC2I CCSGG 1 cut(s) 708
AsuHPI GGTGA 2 cut(s) 415, 635
AxyI CCTNAGG 1 cut(s) 381
BbsI GAAGAC 1 cut(s) 57
BbvI GCAGC 1 cut(s) 613
BccI CCATC 4 cut(s) 170, 328, 653, 863
BciT130I CCWGG 2 cut(s) 696, 814
BcnI CCSGG 1 cut(s) 708
BcoDI GTCTC 1 cut(s) 370
BfaI CTAG 1 cut(s) 29
BfuAI ACCTGC 1 cut(s) 157
BglI GCCNNNNNGGC 1 cut(s) 497
BisI GCNGC 1 cut(s) 602
BlpI GCTNAGC 1 cut(s) 549
BlsI GCNGC 1 cut(s) 603
Bme1390I CCNGG 3 cut(s) 696, 708, 814
BmeRI GACNNNNNGTC 1 cut(s) 76
BmiI GGNNCC 1 cut(s) 811
BmrFI CCNGG 3 cut(s) 696, 708, 814
BmsI GCATC 1 cut(s) 15
BpiI GAAGAC 1 cut(s) 57
BpmI CTGGAG 1 cut(s) 741
Bpu1102I GCTNAGC 1 cut(s) 549
BpuMI CCSGG 1 cut(s) 708
Bsa29I ATCGAT 1 cut(s) 23
BsaI GGTCTC 1 cut(s) 370
BsaWI WCCGGW 1 cut(s) 265
BsaXI ACNNNNNCTCC 4 cut(s) 287, 317, 793, 823
Bsc4I CCNNNNNNNGG 3 cut(s) 292, 445, 714
Bse118I RCCGGY 2 cut(s) 265, 438
Bse1I ACTGG 1 cut(s) 51
Bse21I CCTNAGG 1 cut(s) 381
BseBI CCWGG 2 cut(s) 696, 814
BseCI ATCGAT 1 cut(s) 23
BseGI GGATG 2 cut(s) 277, 339
BseLI CCNNNNNNNGG 3 cut(s) 292, 445, 714
BseMII CTCAG 4 cut(s) 72, 108, 365, 372
BseNI ACTGG 1 cut(s) 51
BseRI GAGGAG 2 cut(s) 53, 134
BseXI GCAGC 1 cut(s) 613
BseYI CCCAGC 1 cut(s) 617
BshFI GGCC 6 cut(s) 211, 338, 491, 500, 650, 694
BshTI ACCGGT 1 cut(s) 265
BshVI ATCGAT 1 cut(s) 23
BsiSI CCGG 4 cut(s) 212, 266, 439, 708
BslFI GGGAC 1 cut(s) 83
BslI CCNNNNNNNGG 3 cut(s) 292, 445, 714
BsmAI GTCTC 1 cut(s) 370
BsmFI GGGAC 1 cut(s) 83
BsmI GAATGC 2 cut(s) 163, 223
BsnI GGCC 6 cut(s) 211, 338, 491, 500, 650, 694
Bso31I GGTCTC 1 cut(s) 370
Bsp143I GATC 1 cut(s) 712
Bsp1720I GCTNAGC 1 cut(s) 549
BspACI CCGC 1 cut(s) 395
BspANI GGCC 6 cut(s) 211, 338, 491, 500, 650, 694
BspCNI CTCAG 4 cut(s) 73, 109, 366, 373
BspDI ATCGAT 1 cut(s) 23
BspLI GGNNCC 1 cut(s) 811
BspMI ACCTGC 1 cut(s) 157
BspQI GCTCTTC 1 cut(s) 428
BspTNI GGTCTC 1 cut(s) 370
BsrFI RCCGGY 2 cut(s) 265, 438
BsrI ACTGG 1 cut(s) 51
BssAI RCCGGY 2 cut(s) 265, 438
BssMI GATC 1 cut(s) 712
Bst2UI CCWGG 2 cut(s) 696, 814
Bst6I CTCTTC 3 cut(s) 102, 428, 758
BstAPI GCANNNNNTGC 1 cut(s) 737
BstC8I GCNNGC 3 cut(s) 209, 300, 440
BstDEI CTNAG 6 cut(s) 12, 81, 117, 374, 381, 549
BstF5I GGATG 2 cut(s) 277, 339
BstKTI GATC 1 cut(s) 715
BstMAI GTCTC 1 cut(s) 370
BstMBI GATC 1 cut(s) 712
BstMWI GCNNNNNNNGC 5 cut(s) 149, 158, 497, 601, 737
BstNI CCWGG 2 cut(s) 696, 814
BstSCI CCNGG 3 cut(s) 694, 706, 812
BstV1I GCAGC 1 cut(s) 613
BstV2I GAAGAC 1 cut(s) 57
Bsu15I ATCGAT 1 cut(s) 23
Bsu36I CCTNAGG 1 cut(s) 381
BsuRI GGCC 6 cut(s) 211, 338, 491, 500, 650, 694
BsuTUI ATCGAT 1 cut(s) 23
BtsCI GGATG 2 cut(s) 277, 339
BveI ACCTGC 1 cut(s) 157
Cac8I GCNNGC 3 cut(s) 209, 300, 440
Cfr10I RCCGGY 2 cut(s) 265, 438
ClaI ATCGAT 1 cut(s) 23
CspAI ACCGGT 1 cut(s) 265
CviAII CATG 2 cut(s) 421, 463
DdeI CTNAG 6 cut(s) 12, 81, 117, 374, 381, 549
DpnI GATC 1 cut(s) 714
DpnII GATC 1 cut(s) 712
DriI GACNNNNNGTC 1 cut(s) 76
EaeI YGGCCR 1 cut(s) 209
Eam1104I CTCTTC 3 cut(s) 102, 428, 758
Eam1105I GACNNNNNGTC 1 cut(s) 76
EarI CTCTTC 3 cut(s) 102, 428, 758
Eco147I AGGCCT 1 cut(s) 694
Eco31I GGTCTC 1 cut(s) 370
Eco57I CTGAAG 1 cut(s) 335
Eco81I CCTNAGG 1 cut(s) 381
EcoRII CCWGG 2 cut(s) 694, 812
FaeI CATG 2 cut(s) 424, 466
FaiI YATR 8 cut(s) 65, 166, 203, 309, 393, 422, 464, 738
FaqI GGGAC 1 cut(s) 83
FatI CATG 2 cut(s) 420, 462
Fnu4HI GCNGC 1 cut(s) 602
FokI GGATG 2 cut(s) 284, 346
Fsp4HI GCNGC 1 cut(s) 602
FspBI CTAG 1 cut(s) 29
GluI GCNGC 1 cut(s) 602
GsaI CCCAGC 1 cut(s) 621
GsuI CTGGAG 1 cut(s) 741
HaeIII GGCC 6 cut(s) 211, 338, 491, 500, 650, 694
HapII CCGG 4 cut(s) 212, 266, 439, 708
Hin1II CATG 2 cut(s) 424, 466
HincII GTYRAC 1 cut(s) 34
HindII GTYRAC 1 cut(s) 34
HindIII AAGCTT 2 cut(s) 191, 347
HinfI GANTC 9 cut(s) 20, 83, 101, 113, 413, 520, 563, 572, 779
HpaI GTTAAC 1 cut(s) 34
HpaII CCGG 4 cut(s) 212, 266, 439, 708
HphI GGTGA 2 cut(s) 415, 635
Hpy166II GTNNAC 2 cut(s) 34, 232
Hpy188I TCNGA 7 cut(s) 82, 88, 106, 118, 375, 412, 525
Hpy188III TCNNGA 1 cut(s) 720
Hpy8I GTNNAC 2 cut(s) 34, 232
HpyAV CCTTC 5 cut(s) 119, 477, 481, 532, 721
HpyCH4IV ACGT 1 cut(s) 242
HpyF10VI GCNNNNNNNGC 5 cut(s) 149, 158, 497, 601, 737
HpyF3I CTNAG 6 cut(s) 12, 81, 117, 374, 381, 549
HpySE526I ACGT 1 cut(s) 242
Hsp92II CATG 2 cut(s) 424, 466
KroI GCCGGC 1 cut(s) 438
KroNI GCCGGC 1 cut(s) 440
KspAI GTTAAC 1 cut(s) 34
Kzo9I GATC 1 cut(s) 712
LguI GCTCTTC 1 cut(s) 428
LmnI GCTCC 2 cut(s) 295, 709
Lsp1109I GCAGC 1 cut(s) 613
LweI GCATC 1 cut(s) 15
MaeI CTAG 1 cut(s) 29
MaeII ACGT 1 cut(s) 242
MaeIII GTNAC 1 cut(s) 623
MalI GATC 1 cut(s) 714
MboI GATC 1 cut(s) 712
MluCI AATT 2 cut(s) 89, 506
MlyI GAGTC 3 cut(s) 92, 572, 581
MmeI TCCRAC 3 cut(s) 225, 390, 621
MroNI GCCGGC 1 cut(s) 438
MseI TTAA 1 cut(s) 33
MspI CCGG 4 cut(s) 212, 266, 439, 708
MspR9I CCNGG 3 cut(s) 696, 708, 814
Mva1269I GAATGC 2 cut(s) 163, 223
MvaI CCWGG 2 cut(s) 696, 814
MwoI GCNNNNNNNGC 5 cut(s) 149, 158, 497, 601, 737
NaeI GCCGGC 1 cut(s) 440
NciI CCSGG 1 cut(s) 708
NdeII GATC 1 cut(s) 712
NgoMIV GCCGGC 1 cut(s) 438
NlaIII CATG 2 cut(s) 424, 466
NlaIV GGNNCC 1 cut(s) 811
NmuCI GTSAC 1 cut(s) 623
PceI AGGCCT 1 cut(s) 694
PciSI GCTCTTC 1 cut(s) 428
PctI GAATGC 2 cut(s) 163, 223
PdiI GCCGGC 1 cut(s) 440
PfeI GAWTC 6 cut(s) 20, 101, 113, 413, 520, 779
PfoI TCCNGGA 2 cut(s) 706, 812
PinAI ACCGGT 1 cut(s) 265
PkrI GCNGC 1 cut(s) 603
PleI GAGTC 3 cut(s) 91, 571, 580
PpsI GAGTC 3 cut(s) 91, 571, 580
Psp6I CCWGG 2 cut(s) 694, 812
PspFI CCCAGC 1 cut(s) 617
PspGI CCWGG 2 cut(s) 694, 812
PspN4I GGNNCC 1 cut(s) 811
SapI GCTCTTC 1 cut(s) 428
SaqAI TTAA 1 cut(s) 33
SatI GCNGC 1 cut(s) 602
Sau3AI GATC 1 cut(s) 712
SchI GAGTC 3 cut(s) 92, 572, 581
ScrFI CCNGG 3 cut(s) 696, 708, 814
SfaNI GCATC 1 cut(s) 15
SfiI GGCCNNNNNGGCC 1 cut(s) 497
Sse9I AATT 2 cut(s) 89, 506
SseBI AGGCCT 1 cut(s) 694
SsiI CCGC 1 cut(s) 395
SspMI CTAG 1 cut(s) 29
StuI AGGCCT 1 cut(s) 694
StyD4I CCNGG 3 cut(s) 694, 706, 812
TaiI ACGT 1 cut(s) 245
TaqI TCGA 1 cut(s) 23
TaqII GACCGA 1 cut(s) 705
TasI AATT 2 cut(s) 89, 506
TfiI GAWTC 6 cut(s) 20, 101, 113, 413, 520, 779
Tru1I TTAA 1 cut(s) 33
Tru9I TTAA 1 cut(s) 33
TseFI GTSAC 1 cut(s) 623
TseI GCWGC 1 cut(s) 601
Tsp45I GTSAC 1 cut(s) 623
TspGWI ACGGA 1 cut(s) 357
XspI CTAG 1 cut(s) 29
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.