Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp03

Orthogroup ID

OG0007246

Physical Location & Seq

Genomic Coordinates Reverse (-)

169848 .. 174234

Gene Structure 4387 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.3G002500.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1404 bp

ATGAGGAGATCTTCTACTCTGGTGGATGTGTTTCTCCTACTTGCATTGTTCAGTGGTGCTCCATGGGCTGTCAAGGGCAGTCCACATTGCAGCAAACGGGCCAACACAGGAGAAATTCGACCTCACAGTGTCACTATCACTGAATTTGGCGCTGTTGGAGATGGGGTCACTCTCAACACAAAAGCCTTTCAGAATGCCATCTTCTATCTCAATTCCTTCACAGACAAGGGTGGGGCCAAGCTTTTTGTCCCAGCTGGCCGGTGGTTGACAGGAAGCTTCCATCTCATCAGCCATCTAACCTTGTGGTTGGATAAAGATGCAGAAATTCTTGGATCAACGAACTCTGATGACTGGCCAGTTGTTGAACCTTTACCATCATATGGTCGAGGAAGGGAGTTGATAGGTGGAAGACATCAAAGTCTCATTTATGGACGCAATTTGACGGATGTTATCATAACAGGTGATAATGGGACTATCGATGGCCAAGGCAGCATCTGGTGGAATTGGTTCCATAACAAAACCCTGAATTACACAAGGCCCCATTTGGTGGAATTGATGAACTCAACTGGGATTGTGATCTCAAACCTGACCTTCCTAAATTCACCATTTTGGACCATTCACCCTGTATATTGCAGCCATGTAACTGTCCAGAATGTGACAATCATTGCTCCTCCAAAGTCACCAAACACGGATGGGATTGATCCAGACTCTTCTGATAATGTCTGCATTGAAGATTGTTATATTAGCACTGGTGATGATCTGATAGCGATCAAAAGTGGATGGGATGAGTATGGTATTTCATATGGTCGTCCCAGTAGAAACATAATCATTCGTAGGATTGCTGGGAAAACTGAAACAAGCGCAGGAATTGCAATTGGAAGTGAGATGTCTGGAGGTGTGTCAGAAGTTCATGCAGAAAACCTCCATTTTTTCAATTCTAAGACAGGTATCAGAATAAAGACCTCCCCAGGAAGGGGCGGCTATGTGAAAAATATCTTTGTATCGAACGTGACCTTGGATGGTATAGATATAGCTATAAGGTTCACCAGTCACTACGGGGAGCACCCAGATGAGTTTTATGACCCAAATGCCCTCCCTATTATAGAGCAAATTACTTTTAAAGATTTCGTAGGAAAGAATATCAAAACTGCAGGTCTCCTAGAGGGTTTAGAAGGTGACACTTTTCTGGACATTTGCTTATCCAATATTACCCTTAATGTGACCTCAAAGTCTCCATGGAAATGCTCTTCTATTCAAGGATATTCTGACTTAGTTTCTCCAGAAACTTGTGAGCCTCTCAAGGAGAGAATCTCCCCTGAGCATTACTTGGATTGTTACTATCTATCTGATCACATATGGATTTCAAGTAATCAAAACAAAGGTGTTCAGTTTCTGTCTTGGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Glyco_hydro_28

Protein Analysis

468

Amino Acids

51.58

Weight (kDa)

5.74

Isoelectric Point (pI)

40.96

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007246)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G62110 AT3G62110
fragaria_vesca	FvH4_1g26220 FvH4_1g26220 FvH4_1g26220 FvH4_1g26220 FvH4_1g26220 FvH4_1g26220
malus_domestica	MD09G1290500.v1.1
prunus_persica	Prupe.3G002500_v2.0.a1 Prupe.3G002500_v2.0.a1 Prupe.3G002500_v2.0.a1 Prupe.3G002500_v2.0.a1
pyrus_communis	pycom09g19830 pycom17g28100
rosa_chinensis	RchiOBHm_Chr3g0485761
rosa_laevigata	RLG00000023127
rosa_multiflora	Rmu_sc0003005.1_g000001
rosa_roxburghii	Rroxscaffold_6G00396340
rosa_rugosa	Rorug03G0221200
rosa_samantha	Rh3AG270500 Rh3BG306000 Rh3CG304400 Rh3DG300500
rosa_wichuraiana	Rw3G024090

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	2 cut(s)	417, 1228
Acc36I	ACCTGC	1 cut(s)	1142
AccB7I	CCANNNNNTGG	2 cut(s)	380, 547
AciI	CCGC	1 cut(s)	978
AclWI	GGATC	2 cut(s)	340, 695
AcoI	YGGCCR	3 cut(s)	256, 353, 481
AcsI	RAATTY	4 cut(s)	114, 143, 324, 598
AfiI	CCNNNNNNNGG	5 cut(s)	380, 547, 972, 973, 974
AgsI	TTSAA	5 cut(s)	365, 731, 934, 1256, 1365
AjnI	CCWGG	1 cut(s)	967
AjuI	GAANNNNNNNTTGG	2 cut(s)	998, 1030
AluBI	AGCT	4 cut(s)	241, 254, 276, 1034
AluI	AGCT	4 cut(s)	241, 254, 276, 1034
Alw21I	GWGCWC	2 cut(s)	61, 1065
Alw26I	GTCTC	3 cut(s)	425, 1160, 1236
AlwI	GGATC	2 cut(s)	340, 695
AlwNI	CAGNNNCTG	2 cut(s)	495, 1393
AoxI	GGCC	6 cut(s)	99, 234, 256, 353, 481, 536
ApeKI	GCWGC	3 cut(s)	90, 489, 633
ApoI	RAATTY	4 cut(s)	114, 143, 324, 598
Asp700I	GAANNNNTTC	1 cut(s)	506
AspLEI	GCGC	2 cut(s)	152, 863
AspS9I	GGNCC	4 cut(s)	99, 234, 537, 612
AsuHPI	GGTGA	7 cut(s)	473, 594, 611, 672, 764, 1036, 1187
AvaII	GGWCC	1 cut(s)	612
BalI	TGGCCA	2 cut(s)	355, 483
BbsI	GAAGAC	1 cut(s)	415
Bbv12I	GWGCWC	2 cut(s)	61, 1065
BbvI	GCAGC	3 cut(s)	102, 501, 645
BccI	CCATC	9 cut(s)	155, 206, 288, 300, 382, 473, 686, 774, 1013
BciT130I	CCWGG	1 cut(s)	969
BclI	TGATCA	1 cut(s)	1348
BcoDI	GTCTC	3 cut(s)	425, 1160, 1236
BfaI	CTAG	1 cut(s)	1160
BfmI	CTRYAG	1 cut(s)	1149
BfoI	RGCGCY	1 cut(s)	153
BfuAI	ACCTGC	1 cut(s)	1142
BglII	AGATCT	1 cut(s)	8
BisI	GCNGC	4 cut(s)	91, 490, 634, 979
BlsI	GCNGC	4 cut(s)	92, 491, 635, 980
Bme1390I	CCNGG	1 cut(s)	969
Bme18I	GGWCC	1 cut(s)	612
BmgT120I	GGNCC	4 cut(s)	99, 234, 537, 612
BmiI	GGNNCC	3 cut(s)	235, 509, 539
BmrFI	CCNGG	1 cut(s)	969
BmrI	ACTGGG	2 cut(s)	576, 807
BmsI	GCATC	2 cut(s)	307, 501
BmuI	ACTGGG	2 cut(s)	576, 807
BpiI	GAAGAC	1 cut(s)	415
BplI	GAGNNNNNCTC	2 cut(s)	1295, 1327
BpmI	CTGGAG	2 cut(s)	912, 1263
Bpu10I	CCTNAGC	1 cut(s)	1317
BpuEI	CTTGAG	1 cut(s)	1283
Bsa29I	ATCGAT	1 cut(s)	477
BsaBI	GATNNNNATC	2 cut(s)	575, 767
BsaI	GGTCTC	1 cut(s)	1160
BsaJI	CCNNGG	5 cut(s)	62, 484, 967, 1014, 1235
BsaXI	ACNNNNNCTCC	2 cut(s)	150, 180
Bsc4I	CCNNNNNNNGG	5 cut(s)	380, 547, 972, 973, 974
Bse118I	RCCGGY	1 cut(s)	258
Bse1I	ACTGG	6 cut(s)	356, 356, 571, 754, 813, 1047
Bse3DI	GCAATG	2 cut(s)	85, 663
Bse8I	GATNNNNATC	2 cut(s)	575, 767
BseBI	CCWGG	1 cut(s)	969
BseCI	ATCGAT	1 cut(s)	477
BseDI	CCNNGG	5 cut(s)	62, 484, 967, 1014, 1235
BseGI	GGATG	6 cut(s)	31, 451, 697, 785, 790, 1024
BseJI	GATNNNNATC	2 cut(s)	575, 767
BseLI	CCNNNNNNNGG	5 cut(s)	380, 547, 972, 973, 974
BseMI	GCAATG	2 cut(s)	85, 663
BseMII	CTCAG	1 cut(s)	1308
BseNI	ACTGG	6 cut(s)	356, 356, 571, 754, 813, 1047
BseRI	GAGGAG	2 cut(s)	19, 660
BseXI	GCAGC	3 cut(s)	102, 501, 645
BseYI	CCCAGC	2 cut(s)	250, 842
BshFI	GGCC	6 cut(s)	101, 236, 258, 355, 483, 538
BshVI	ATCGAT	1 cut(s)	477
BsiHKAI	GWGCWC	2 cut(s)	61, 1065
BsiSI	CCGG	1 cut(s)	259
BslFI	GGGAC	3 cut(s)	233, 484, 795
BslI	CCNNNNNNNGG	5 cut(s)	380, 547, 972, 973, 974
BsmAI	GTCTC	3 cut(s)	425, 1160, 1236
BsmFI	GGGAC	3 cut(s)	233, 484, 795
BsmI	GAATGC	1 cut(s)	199
BsnI	GGCC	6 cut(s)	101, 236, 258, 355, 483, 538
Bso31I	GGTCTC	1 cut(s)	1160
Bsp1286I	GDGCHC	2 cut(s)	61, 1065
Bsp143I	GATC	7 cut(s)	8, 332, 576, 700, 757, 768, 1348
Bsp19I	CCATGG	2 cut(s)	62, 1235
BspACI	CCGC	1 cut(s)	978
BspANI	GGCC	6 cut(s)	101, 236, 258, 355, 483, 538
BspCNI	CTCAG	1 cut(s)	1309
BspDI	ATCGAT	1 cut(s)	477
BspLI	GGNNCC	3 cut(s)	235, 509, 539
BspMAI	CTGCAG	1 cut(s)	1153
BspMI	ACCTGC	1 cut(s)	1142
BspPI	GGATC	2 cut(s)	340, 695
BspQI	GCTCTTC	1 cut(s)	1252
BspTNI	GGTCTC	1 cut(s)	1160
BsrDI	GCAATG	2 cut(s)	85, 663
BsrFI	RCCGGY	1 cut(s)	258
BsrI	ACTGG	6 cut(s)	356, 356, 571, 754, 813, 1047
BssAI	RCCGGY	1 cut(s)	258
BssECI	CCNNGG	5 cut(s)	62, 484, 967, 1014, 1235
BssMI	GATC	7 cut(s)	8, 332, 576, 700, 757, 768, 1348
BssT1I	CCWWGG	4 cut(s)	62, 484, 1014, 1235
Bst2UI	CCWGG	1 cut(s)	969
Bst4CI	ACNGT	2 cut(s)	128, 646
Bst6I	CTCTTC	2 cut(s)	715, 1252
BstAPI	GCANNNNNTGC	1 cut(s)	869
BstC8I	GCNNGC	1 cut(s)	256
BstDEI	CTNAG	3 cut(s)	939, 1270, 1317
BstDSI	CCRYGG	2 cut(s)	62, 1235
BstF5I	GGATG	6 cut(s)	31, 451, 697, 785, 790, 1024
BstH2I	RGCGCY	1 cut(s)	153
BstHHI	GCGC	2 cut(s)	152, 863
BstKTI	GATC	7 cut(s)	11, 335, 579, 703, 760, 771, 1351
BstMAI	GTCTC	3 cut(s)	425, 1160, 1236
BstMBI	GATC	7 cut(s)	8, 332, 576, 700, 757, 768, 1348
BstMWI	GCNNNNNNNGC	3 cut(s)	65, 489, 869
BstNI	CCWGG	1 cut(s)	969
BstSCI	CCNGG	1 cut(s)	967
BstSFI	CTRYAG	1 cut(s)	1149
BstV1I	GCAGC	3 cut(s)	102, 501, 645
BstV2I	GAAGAC	1 cut(s)	415
BstX2I	RGATCY	1 cut(s)	8
BstYI	RGATCY	1 cut(s)	8
Bsu15I	ATCGAT	1 cut(s)	477
BsuRI	GGCC	6 cut(s)	101, 236, 258, 355, 483, 538
BsuTUI	ATCGAT	1 cut(s)	477
BtgI	CCRYGG	2 cut(s)	62, 1235
BtsCI	GGATG	6 cut(s)	31, 451, 697, 785, 790, 1024
BtsIMutI	CAGTG	4 cut(s)	58, 133, 138, 747
BveI	ACCTGC	1 cut(s)	1142
Cac8I	GCNNGC	1 cut(s)	256
CaiI	CAGNNNCTG	2 cut(s)	495, 1393
CfoI	GCGC	2 cut(s)	152, 863
Cfr10I	RCCGGY	1 cut(s)	258
Cfr13I	GGNCC	4 cut(s)	99, 234, 537, 612
ClaI	ATCGAT	1 cut(s)	477
CseI	GACGC	1 cut(s)	441
CviAII	CATG	4 cut(s)	63, 638, 911, 1236
DdeI	CTNAG	3 cut(s)	939, 1270, 1317
DpnI	GATC	7 cut(s)	10, 334, 578, 702, 759, 770, 1350
DpnII	GATC	7 cut(s)	8, 332, 576, 700, 757, 768, 1348
DraI	TTTAAA	1 cut(s)	1120
DrdI	GACNNNNNNGTC	2 cut(s)	417, 1228
DseDI	GACNNNNNNGTC	2 cut(s)	417, 1228
EaeI	YGGCCR	3 cut(s)	256, 353, 481
Eam1104I	CTCTTC	2 cut(s)	715, 1252
EarI	CTCTTC	2 cut(s)	715, 1252
Eco130I	CCWWGG	4 cut(s)	62, 484, 1014, 1235
Eco31I	GGTCTC	1 cut(s)	1160
Eco47I	GGWCC	1 cut(s)	612
EcoO109I	RGGNCCY	1 cut(s)	537
EcoRII	CCWGG	1 cut(s)	967
EcoT14I	CCWWGG	4 cut(s)	62, 484, 1014, 1235
ErhI	CCWWGG	4 cut(s)	62, 484, 1014, 1235
FaeI	CATG	4 cut(s)	66, 641, 914, 1239
FaqI	GGGAC	3 cut(s)	233, 484, 795
FatI	CATG	4 cut(s)	62, 637, 910, 1235
FauNDI	CATATG	3 cut(s)	379, 802, 1355
FbaI	TGATCA	1 cut(s)	1348
Fnu4HI	GCNGC	4 cut(s)	91, 490, 634, 979
FokI	GGATG	6 cut(s)	38, 458, 704, 792, 797, 1031
Fsp4HI	GCNGC	4 cut(s)	91, 490, 634, 979
FspBI	CTAG	1 cut(s)	1160
GlaI	GCGC	2 cut(s)	151, 862
GluI	GCNGC	4 cut(s)	91, 490, 634, 979
GsaI	CCCAGC	2 cut(s)	254, 846
GsuI	CTGGAG	2 cut(s)	912, 1263
HaeII	RGCGCY	1 cut(s)	153
HaeIII	GGCC	6 cut(s)	101, 236, 258, 355, 483, 538
HapII	CCGG	1 cut(s)	259
HgaI	GACGC	1 cut(s)	441
HhaI	GCGC	2 cut(s)	152, 863
Hin1II	CATG	4 cut(s)	66, 641, 914, 1239
Hin6I	GCGC	2 cut(s)	150, 861
HinP1I	GCGC	2 cut(s)	150, 861
HincII	GTYRAC	1 cut(s)	267
HindII	GTYRAC	1 cut(s)	267
HindIII	AAGCTT	2 cut(s)	239, 274
HinfI	GANTC	2 cut(s)	707, 1308
HpaII	CCGG	1 cut(s)	259
HphI	GGTGA	7 cut(s)	473, 594, 611, 672, 764, 1036, 1187
Hpy166II	GTNNAC	3 cut(s)	83, 267, 1044
Hpy188I	TCNGA	8 cut(s)	192, 346, 715, 762, 904, 953, 1267, 1348
Hpy188III	TCNNGA	5 cut(s)	649, 704, 891, 1187, 1280
Hpy8I	GTNNAC	3 cut(s)	83, 267, 1044
HpyAV	CCTTC	5 cut(s)	226, 384, 601, 966, 1166
HpyCH4III	ACNGT	2 cut(s)	128, 646
HpyCH4IV	ACGT	1 cut(s)	1008
HpyCH4V	TGCA	8 cut(s)	44, 90, 320, 633, 726, 872, 914, 1151
HpyF10VI	GCNNNNNNNGC	3 cut(s)	65, 489, 869
HpyF3I	CTNAG	3 cut(s)	939, 1270, 1317
HpySE526I	ACGT	1 cut(s)	1008
Hsp92II	CATG	4 cut(s)	66, 641, 914, 1239
HspAI	GCGC	2 cut(s)	150, 861
Ksp22I	TGATCA	1 cut(s)	1348
Kzo9I	GATC	7 cut(s)	8, 332, 576, 700, 757, 768, 1348
LguI	GCTCTTC	1 cut(s)	1252
LmnI	GCTCC	3 cut(s)	64, 673, 1060
Lsp1109I	GCAGC	3 cut(s)	102, 501, 645
LweI	GCATC	2 cut(s)	307, 501
MaeI	CTAG	1 cut(s)	1160
MaeII	ACGT	1 cut(s)	1008
MalI	GATC	7 cut(s)	10, 334, 578, 702, 759, 770, 1350
MboI	GATC	7 cut(s)	8, 332, 576, 700, 757, 768, 1348
MboII	GAAGA	6 cut(s)	3, 193, 420, 702, 743, 1239
MfeI	CAATTG	1 cut(s)	873
MflI	RGATCY	1 cut(s)	8
MhlI	GDGCHC	2 cut(s)	61, 1065
MlsI	TGGCCA	2 cut(s)	355, 483
MluNI	TGGCCA	2 cut(s)	355, 483
MlyI	GAGTC	1 cut(s)	701
MmeI	TCCRAC	2 cut(s)	136, 288
Mox20I	TGGCCA	2 cut(s)	355, 483
MroXI	GAANNNNTTC	1 cut(s)	506
MscI	TGGCCA	2 cut(s)	355, 483
MseI	TTAA	2 cut(s)	1119, 1215
MslI	CAYNNNNRTG	2 cut(s)	1068, 1240
Msp20I	TGGCCA	2 cut(s)	355, 483
MspA1I	CMGCKG	1 cut(s)	254
MspI	CCGG	1 cut(s)	259
MspR9I	CCNGG	1 cut(s)	969
MunI	CAATTG	1 cut(s)	873
Mva1269I	GAATGC	1 cut(s)	199
MvaI	CCWGG	1 cut(s)	969
MwoI	GCNNNNNNNGC	3 cut(s)	65, 489, 869
NcoI	CCATGG	2 cut(s)	62, 1235
NdeI	CATATG	3 cut(s)	379, 802, 1355
NdeII	GATC	7 cut(s)	8, 332, 576, 700, 757, 768, 1348
NlaIII	CATG	4 cut(s)	66, 641, 914, 1239
NlaIV	GGNNCC	3 cut(s)	235, 509, 539
NmuCI	GTSAC	8 cut(s)	130, 166, 655, 678, 1009, 1049, 1175, 1219
PciSI	GCTCTTC	1 cut(s)	1252
PctI	GAATGC	1 cut(s)	199
PdmI	GAANNNNTTC	1 cut(s)	506
PfeI	GAWTC	1 cut(s)	1308
PflMI	CCANNNNNTGG	2 cut(s)	380, 547
PkrI	GCNGC	4 cut(s)	92, 491, 635, 980
PleI	GAGTC	1 cut(s)	701
PpsI	GAGTC	1 cut(s)	701
Psp6I	CCWGG	1 cut(s)	967
PspFI	CCCAGC	2 cut(s)	250, 842
PspGI	CCWGG	1 cut(s)	967
PspN4I	GGNNCC	3 cut(s)	235, 509, 539
PspPI	GGNCC	4 cut(s)	99, 234, 537, 612
PstI	CTGCAG	1 cut(s)	1153
PstNI	CAGNNNCTG	2 cut(s)	495, 1393
PsuI	RGATCY	1 cut(s)	8
PvuII	CAGCTG	1 cut(s)	254
RseI	CAYNNNNRTG	2 cut(s)	1068, 1240
SapI	GCTCTTC	1 cut(s)	1252
SaqAI	TTAA	2 cut(s)	1119, 1215
SatI	GCNGC	4 cut(s)	91, 490, 634, 979
Sau3AI	GATC	7 cut(s)	8, 332, 576, 700, 757, 768, 1348
Sau96I	GGNCC	4 cut(s)	99, 234, 537, 612
SchI	GAGTC	1 cut(s)	701
ScrFI	CCNGG	1 cut(s)	969
SduI	GDGCHC	2 cut(s)	61, 1065
SfaNI	GCATC	2 cut(s)	307, 501
SfcI	CTRYAG	1 cut(s)	1149
SinI	GGWCC	1 cut(s)	612
SmiMI	CAYNNNNRTG	2 cut(s)	1068, 1240
SmlI	CTYRAG	1 cut(s)	1298
SmoI	CTYRAG	1 cut(s)	1298
SsiI	CCGC	1 cut(s)	978
SspI	AATATT	1 cut(s)	1207
SspMI	CTAG	1 cut(s)	1160
StyD4I	CCNGG	1 cut(s)	967
StyI	CCWWGG	4 cut(s)	62, 484, 1014, 1235
TaaI	ACNGT	2 cut(s)	128, 646
TaiI	ACGT	1 cut(s)	1011
TaqI	TCGA	4 cut(s)	118, 385, 477, 1004
TauI	GCSGC	1 cut(s)	981
TfiI	GAWTC	1 cut(s)	1308
Tru1I	TTAA	2 cut(s)	1119, 1215
Tru9I	TTAA	2 cut(s)	1119, 1215
TscAI	CASTG	4 cut(s)	58, 133, 145, 754
TseFI	GTSAC	8 cut(s)	130, 166, 655, 678, 1009, 1049, 1175, 1219
TseI	GCWGC	3 cut(s)	90, 489, 633
Tsp45I	GTSAC	8 cut(s)	130, 166, 655, 678, 1009, 1049, 1175, 1219
TspDTI	ATGAA	3 cut(s)	572, 789, 899
TspGWI	ACGGA	2 cut(s)	458, 704
TspRI	CASTG	4 cut(s)	58, 133, 145, 754
Van91I	CCANNNNNTGG	2 cut(s)	380, 547
VpaK11BI	GGWCC	1 cut(s)	612
XapI	RAATTY	4 cut(s)	114, 143, 324, 598
XcmI	CCANNNNNNNNNTGG	1 cut(s)	258
XmnI	GAANNNNTTC	1 cut(s)	506
XspI	CTAG	1 cut(s)	1160

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.