Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr9

Orthogroup ID

OG0007246

Physical Location & Seq

Genomic Coordinates Reverse (-)

20690899 .. 20693884

Gene Structure 2986 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom09g19830.4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1314 bp

ATGATGAGGACGACGACATCTTCTTCTTCTTCTTCTTCCACTCTCACTGTCACTGTGGTGGACGTGCTTCTGCTACTTGCATTGCTTGGCGCTGCTGCTCCGTCGTCTGTCAAAGGCAGCCCACAGTGCAGCAATCAGGCCAACTCAGGGGAAATTCGACCTCACAGTGTCGCCATCACTGAATTTGGCGCTGTAGGAGATGGGGTCACTCTCAACACAAAAGCCTTTCAGAATGCCGTCTTCTATCTCAACTCTTTCACACGCAAGGGTGGGGCCAAGCTTTTTGTCCCTGCTGGCCGCTGGTTGACAGGAAGCTTCCGTCTCATCAGTCATCTAACCCTCTGGTTGGATAAGGACGCTGTCATTCTTGGATCAACGAAATCTGATGATTGGCCAATTGTTGAACCATTACCATCATACGGTCGAGGAAGGGAGTTGGCAGGAGGAAGACATCGAAGTCTCATCTATGGATGCGATTTGACAGACATTATCATAACAGGTGATAATGGTACCATTGATGGCCAAGGTAGCATCTGGTGGGATTGGTTCCATAGCAAAACCCTGAATTATACGAGGCCCCATTTGTTGGAGTTGATAAACTCAACTGGGGTTGTCATCTCAAACTTGACCTTCCTAAATTCACCATTTTGGACCATTCACCCTGTATATTGCAGCCATGTAACTATCCAGAATCTGACAATCCTTGCTCCTCTCAAGTCTCCAAACACAGACGGGATTGATCCAGATTCTTCAGATAATGTGTGCATTGAAGACTGTTATATTAGCACTGGTGATGATCTGATTTCCATCAAAAGTGGGTGGGATGAGTATGGAATTTCATATGGTCGACCCAGTAGAAACATCATCATTCACAGGATTACCGGTAAAACTGAAACAAGCGCTGGAATTGCAATTGGAAGTGAGATGTCAGGAGGCATAGCTTTAAGGTTCACCAGTCAGTATGGGGAACACCCAGATGAGTTTTACGACCCAAATGCCCTCCCTAATGTAGAGCGAATTACTTTTAAAGATATCATAGGAGAGAATATCAAAACTGCTGGTCTCCTAGAGGGTTTAGAAGGTGAAAATTTTCTGAACATTTGCCTATCTAATATTACCCTTAACGTGACCTCAAAATCTCCATGGAAATGCTCTTCTGTTCAAGGATATTCCAACCTAGTTTCTCCAGAAACTTGTGCGCCTCTCAAGGAGAATCTCTCCCCACGGCATTATTCAGATTGTTACTCTCTATCTGATGACATATGGATTTCTTCCAGTAATCAAAACAGAGGTGCTCGGTGGCTATCTTGGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Glyco_hydro_28

Protein Analysis

438

Amino Acids

47.68

Weight (kDa)

5.48

Isoelectric Point (pI)

39.75

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007246)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G62110 AT3G62110
fragaria_vesca	FvH4_1g26220 FvH4_1g26220 FvH4_1g26220 FvH4_1g26220 FvH4_1g26220 FvH4_1g26220
malus_domestica	MD09G1290500.v1.1
prunus_persica	Prupe.3G002500_v2.0.a1 Prupe.3G002500_v2.0.a1 Prupe.3G002500_v2.0.a1 Prupe.3G002500_v2.0.a1
pyrus_communis	pycom09g19830 pycom17g28100
rosa_chinensis	RchiOBHm_Chr3g0485761
rosa_laevigata	RLG00000023127
rosa_multiflora	Rmu_sc0003005.1_g000001
rosa_roxburghii	Rroxscaffold_6G00396340
rosa_rugosa	Rorug03G0221200
rosa_samantha	Rh3AG270500 Rh3BG306000 Rh3CG304400 Rh3DG300500
rosa_wichuraiana	Rw3G024090

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	456
Acc65I	GGTACC	1 cut(s)	509
AccB1I	GGYRCC	1 cut(s)	509
AccB7I	CCANNNNNTGG	1 cut(s)	586
AccI	GTMKAC	1 cut(s)	847
AciI	CCGC	1 cut(s)	298
AclWI	GGATC	2 cut(s)	379, 734
AcoI	YGGCCR	3 cut(s)	295, 392, 520
AcsI	RAATTY	5 cut(s)	153, 182, 637, 834, 1087
AcuI	CTGAAG	1 cut(s)	735
AfaI	GTAC	1 cut(s)	511
AfeI	AGCGCT	1 cut(s)	901
AfiI	CCNNNNNNNGG	4 cut(s)	147, 346, 419, 586
AgeI	ACCGGT	1 cut(s)	881
AgsI	TTSAA	3 cut(s)	404, 770, 1163
AjiI	CACGTC	1 cut(s)	64
AleI	CACNNNNGTG	1 cut(s)	56
AluBI	AGCT	3 cut(s)	280, 315, 941
AluI	AGCT	3 cut(s)	280, 315, 941
Alw21I	GWGCWC	1 cut(s)	1297
Alw26I	GTCTC	4 cut(s)	326, 464, 723, 1067
AlwI	GGATC	2 cut(s)	379, 734
AlwNI	CAGNNNCTG	1 cut(s)	694
Aor51HI	AGCGCT	1 cut(s)	901
AoxI	GGCC	6 cut(s)	138, 273, 295, 392, 520, 575
ApeKI	GCWGC	5 cut(s)	92, 95, 117, 129, 672
ApoI	RAATTY	5 cut(s)	153, 182, 637, 834, 1087
AsiGI	ACCGGT	1 cut(s)	881
Asp700I	GAANNNNTTC	1 cut(s)	1089
Asp718I	GGTACC	1 cut(s)	509
AspLEI	GCGC	4 cut(s)	92, 191, 902, 1201
AspS9I	GGNCC	3 cut(s)	273, 576, 651
AsuHPI	GGTGA	6 cut(s)	512, 633, 650, 803, 943, 1094
AvaII	GGWCC	1 cut(s)	651
BalI	TGGCCA	2 cut(s)	394, 522
BanI	GGYRCC	1 cut(s)	509
BbsI	GAAGAC	3 cut(s)	232, 454, 777
Bbv12I	GWGCWC	1 cut(s)	1297
BbvI	GCAGC	5 cut(s)	79, 82, 129, 141, 684
BccI	CCATC	5 cut(s)	182, 194, 421, 512, 815
BceAI	ACGGC	2 cut(s)	221, 1241
BcgI	CGANNNNNNTGC	2 cut(s)	977, 1011
BcoDI	GTCTC	4 cut(s)	326, 464, 723, 1067
BfaI	CTAG	2 cut(s)	1067, 1178
BfmI	CTRYAG	1 cut(s)	192
BfoI	RGCGCY	3 cut(s)	93, 192, 903
BisI	GCNGC	6 cut(s)	93, 96, 118, 130, 298, 673
BlsI	GCNGC	6 cut(s)	94, 97, 119, 131, 299, 674
Bme18I	GGWCC	1 cut(s)	651
BmgBI	CACGTC	1 cut(s)	64
BmgT120I	GGNCC	3 cut(s)	273, 576, 651
BmiI	GGNNCC	4 cut(s)	274, 511, 548, 578
BmrI	ACTGGG	2 cut(s)	615, 846
BmsI	GCATC	2 cut(s)	461, 540
BmuI	ACTGGG	2 cut(s)	615, 846
BpiI	GAAGAC	3 cut(s)	232, 454, 777
BplI	GAGNNNNNCTC	2 cut(s)	1202, 1234
BpmI	CTGGAG	1 cut(s)	1170
BpuEI	CTTGAG	2 cut(s)	698, 1190
BsaBI	GATNNNNATC	1 cut(s)	806
BsaI	GGTCTC	1 cut(s)	1067
BsaJI	CCNNGG	3 cut(s)	523, 1142, 1223
BsaWI	WCCGGW	1 cut(s)	881
BsaXI	ACNNNNNCTCC	2 cut(s)	189, 219
Bsc4I	CCNNNNNNNGG	4 cut(s)	147, 346, 419, 586
Bse118I	RCCGGY	1 cut(s)	881
Bse1I	ACTGG	5 cut(s)	610, 793, 852, 954, 1275
Bse3DI	GCAATG	1 cut(s)	80
Bse8I	GATNNNNATC	1 cut(s)	806
BseDI	CCNNGG	3 cut(s)	523, 1142, 1223
BseGI	GGATG	2 cut(s)	476, 829
BseJI	GATNNNNATC	1 cut(s)	806
BseLI	CCNNNNNNNGG	4 cut(s)	147, 346, 419, 586
BseMI	GCAATG	1 cut(s)	80
BseMII	CTCAG	1 cut(s)	159
BseNI	ACTGG	5 cut(s)	610, 793, 852, 954, 1275
BseRI	GAGGAG	1 cut(s)	699
BseXI	GCAGC	5 cut(s)	79, 82, 129, 141, 684
BsgI	GTGCAG	1 cut(s)	148
Bsh1285I	CGRYCG	1 cut(s)	424
BshFI	GGCC	6 cut(s)	140, 275, 297, 394, 522, 577
BshNI	GGYRCC	1 cut(s)	509
BshTI	ACCGGT	1 cut(s)	881
BsiEI	CGRYCG	1 cut(s)	424
BsiHKAI	GWGCWC	1 cut(s)	1297
BsiSI	CCGG	1 cut(s)	882
BslFI	GGGAC	1 cut(s)	272
BslI	CCNNNNNNNGG	4 cut(s)	147, 346, 419, 586
BsmAI	GTCTC	4 cut(s)	326, 464, 723, 1067
BsmBI	CGTCTC	1 cut(s)	326
BsmFI	GGGAC	1 cut(s)	272
BsmI	GAATGC	1 cut(s)	238
BsnI	GGCC	6 cut(s)	140, 275, 297, 394, 522, 577
Bso31I	GGTCTC	1 cut(s)	1067
Bsp1286I	GDGCHC	1 cut(s)	1297
Bsp143I	GATC	3 cut(s)	371, 739, 796
Bsp19I	CCATGG	1 cut(s)	1142
BspACI	CCGC	1 cut(s)	298
BspANI	GGCC	6 cut(s)	140, 275, 297, 394, 522, 577
BspCNI	CTCAG	1 cut(s)	158
BspLI	GGNNCC	4 cut(s)	274, 511, 548, 578
BspPI	GGATC	2 cut(s)	379, 734
BspQI	GCTCTTC	1 cut(s)	1159
BspT107I	GGYRCC	1 cut(s)	509
BspTNI	GGTCTC	1 cut(s)	1067
BsrDI	GCAATG	1 cut(s)	80
BsrFI	RCCGGY	1 cut(s)	881
BsrI	ACTGG	5 cut(s)	610, 793, 852, 954, 1275
BssAI	RCCGGY	1 cut(s)	881
BssECI	CCNNGG	3 cut(s)	523, 1142, 1223
BssMI	GATC	3 cut(s)	371, 739, 796
BssT1I	CCWWGG	2 cut(s)	523, 1142
Bst4CI	ACNGT	6 cut(s)	49, 55, 126, 167, 422, 776
Bst6I	CTCTTC	1 cut(s)	1159
BstC8I	GCNNGC	1 cut(s)	295
BstDEI	CTNAG	1 cut(s)	145
BstDSI	CCRYGG	2 cut(s)	1142, 1223
BstF5I	GGATG	2 cut(s)	476, 829
BstH2I	RGCGCY	3 cut(s)	93, 192, 903
BstHHI	GCGC	4 cut(s)	92, 191, 902, 1201
BstKTI	GATC	3 cut(s)	374, 742, 799
BstMAI	GTCTC	4 cut(s)	326, 464, 723, 1067
BstMBI	GATC	3 cut(s)	371, 739, 796
BstMCI	CGRYCG	1 cut(s)	424
BstMWI	GCNNNNNNNGC	3 cut(s)	126, 528, 908
BstSFI	CTRYAG	1 cut(s)	192
BstV1I	GCAGC	5 cut(s)	79, 82, 129, 141, 684
BstV2I	GAAGAC	3 cut(s)	232, 454, 777
BsuRI	GGCC	6 cut(s)	140, 275, 297, 394, 522, 577
BtgI	CCRYGG	2 cut(s)	1142, 1223
BtrI	CACGTC	1 cut(s)	64
BtsCI	GGATG	2 cut(s)	476, 829
BtsIMutI	CAGTG	6 cut(s)	45, 51, 131, 172, 177, 786
Cac8I	GCNNGC	1 cut(s)	295
CaiI	CAGNNNCTG	1 cut(s)	694
CfoI	GCGC	4 cut(s)	92, 191, 902, 1201
Cfr10I	RCCGGY	1 cut(s)	881
Cfr13I	GGNCC	3 cut(s)	273, 576, 651
CseI	GACGC	1 cut(s)	365
Csp6I	GTAC	1 cut(s)	510
CspAI	ACCGGT	1 cut(s)	881
CviAII	CATG	2 cut(s)	677, 1143
CviQI	GTAC	1 cut(s)	510
DdeI	CTNAG	1 cut(s)	145
DpnI	GATC	3 cut(s)	373, 741, 798
DpnII	GATC	3 cut(s)	371, 739, 796
DraI	TTTAAA	1 cut(s)	1027
DrdI	GACNNNNNNGTC	1 cut(s)	456
DseDI	GACNNNNNNGTC	1 cut(s)	456
EaeI	YGGCCR	3 cut(s)	295, 392, 520
Eam1104I	CTCTTC	1 cut(s)	1159
EarI	CTCTTC	1 cut(s)	1159
Eco130I	CCWWGG	2 cut(s)	523, 1142
Eco31I	GGTCTC	1 cut(s)	1067
Eco32I	GATATC	1 cut(s)	1033
Eco47I	GGWCC	1 cut(s)	651
Eco47III	AGCGCT	1 cut(s)	901
Eco57I	CTGAAG	1 cut(s)	735
EcoO109I	RGGNCCY	1 cut(s)	576
EcoRV	GATATC	1 cut(s)	1033
EcoT14I	CCWWGG	2 cut(s)	523, 1142
ErhI	CCWWGG	2 cut(s)	523, 1142
Esp3I	CGTCTC	1 cut(s)	326
FaeI	CATG	2 cut(s)	680, 1146
FaqI	GGGAC	1 cut(s)	272
FatI	CATG	2 cut(s)	676, 1142
FauNDI	CATATG	2 cut(s)	841, 1262
FblI	GTMKAC	1 cut(s)	847
Fnu4HI	GCNGC	6 cut(s)	93, 96, 118, 130, 298, 673
FokI	GGATG	2 cut(s)	483, 836
Fsp4HI	GCNGC	6 cut(s)	93, 96, 118, 130, 298, 673
FspBI	CTAG	2 cut(s)	1067, 1178
GlaI	GCGC	4 cut(s)	91, 190, 901, 1200
GluI	GCNGC	6 cut(s)	93, 96, 118, 130, 298, 673
GsuI	CTGGAG	1 cut(s)	1170
HaeII	RGCGCY	3 cut(s)	93, 192, 903
HaeIII	GGCC	6 cut(s)	140, 275, 297, 394, 522, 577
HapII	CCGG	1 cut(s)	882
HgaI	GACGC	1 cut(s)	365
HhaI	GCGC	4 cut(s)	92, 191, 902, 1201
Hin1II	CATG	2 cut(s)	680, 1146
Hin6I	GCGC	4 cut(s)	90, 189, 900, 1199
HinP1I	GCGC	4 cut(s)	90, 189, 900, 1199
HincII	GTYRAC	2 cut(s)	306, 848
HindII	GTYRAC	2 cut(s)	306, 848
HindIII	AAGCTT	2 cut(s)	278, 313
HinfI	GANTC	3 cut(s)	691, 746, 1213
HpaII	CCGG	1 cut(s)	882
HphI	GGTGA	6 cut(s)	512, 633, 650, 803, 943, 1094
Hpy166II	GTNNAC	4 cut(s)	61, 306, 848, 951
Hpy188I	TCNGA	8 cut(s)	231, 385, 696, 754, 801, 1095, 1237, 1255
Hpy188III	TCNNGA	4 cut(s)	688, 743, 930, 1187
Hpy8I	GTNNAC	4 cut(s)	61, 306, 848, 951
Hpy99I	CGWCG	2 cut(s)	16, 106
HpyAV	CCTTC	3 cut(s)	423, 640, 1073
HpyCH4III	ACNGT	6 cut(s)	49, 55, 126, 167, 422, 776
HpyCH4IV	ACGT	2 cut(s)	63, 1125
HpyCH4V	TGCA	5 cut(s)	80, 129, 672, 765, 911
HpyF10VI	GCNNNNNNNGC	3 cut(s)	126, 528, 908
HpyF3I	CTNAG	1 cut(s)	145
HpySE526I	ACGT	2 cut(s)	63, 1125
Hsp92II	CATG	2 cut(s)	680, 1146
HspAI	GCGC	4 cut(s)	90, 189, 900, 1199
KpnI	GGTACC	1 cut(s)	513
Kzo9I	GATC	3 cut(s)	371, 739, 796
LguI	GCTCTTC	1 cut(s)	1159
LmnI	GCTCC	2 cut(s)	103, 712
Lsp1109I	GCAGC	5 cut(s)	79, 82, 129, 141, 684
LweI	GCATC	2 cut(s)	461, 540
MaeI	CTAG	2 cut(s)	1067, 1178
MaeII	ACGT	2 cut(s)	63, 1125
MaeIII	GTNAC	5 cut(s)	49, 205, 679, 1126, 1241
MalI	GATC	3 cut(s)	373, 741, 798
MboI	GATC	3 cut(s)	371, 739, 796
MfeI	CAATTG	2 cut(s)	396, 912
MhlI	GDGCHC	1 cut(s)	1297
MlsI	TGGCCA	2 cut(s)	394, 522
MluNI	TGGCCA	2 cut(s)	394, 522
MmeI	TCCRAC	3 cut(s)	327, 567, 1197
Mox20I	TGGCCA	2 cut(s)	394, 522
MroXI	GAANNNNTTC	1 cut(s)	1089
MscI	TGGCCA	2 cut(s)	394, 522
MseI	TTAA	3 cut(s)	944, 1026, 1122
MslI	CAYNNNNRTG	3 cut(s)	56, 975, 1147
Msp20I	TGGCCA	2 cut(s)	394, 522
MspA1I	CMGCKG	1 cut(s)	300
MspI	CCGG	1 cut(s)	882
MunI	CAATTG	2 cut(s)	396, 912
Mva1269I	GAATGC	1 cut(s)	238
MwoI	GCNNNNNNNGC	3 cut(s)	126, 528, 908
NcoI	CCATGG	1 cut(s)	1142
NdeI	CATATG	2 cut(s)	841, 1262
NdeII	GATC	3 cut(s)	371, 739, 796
NlaIII	CATG	2 cut(s)	680, 1146
NlaIV	GGNNCC	4 cut(s)	274, 511, 548, 578
NmuCI	GTSAC	3 cut(s)	49, 205, 1126
OliI	CACNNNNGTG	1 cut(s)	56
PciSI	GCTCTTC	1 cut(s)	1159
PctI	GAATGC	1 cut(s)	238
PdmI	GAANNNNTTC	1 cut(s)	1089
PfeI	GAWTC	3 cut(s)	691, 746, 1213
PflFI	GACNNNGTC	1 cut(s)	359
PflMI	CCANNNNNTGG	1 cut(s)	586
PinAI	ACCGGT	1 cut(s)	881
PkrI	GCNGC	6 cut(s)	94, 97, 119, 131, 299, 674
PspN4I	GGNNCC	4 cut(s)	274, 511, 548, 578
PspPI	GGNCC	3 cut(s)	273, 576, 651
PstNI	CAGNNNCTG	1 cut(s)	694
PsyI	GACNNNGTC	1 cut(s)	359
RsaI	GTAC	1 cut(s)	511
RsaNI	GTAC	1 cut(s)	510
RseI	CAYNNNNRTG	3 cut(s)	56, 975, 1147
SalI	GTCGAC	1 cut(s)	846
SapI	GCTCTTC	1 cut(s)	1159
SaqAI	TTAA	3 cut(s)	944, 1026, 1122
SatI	GCNGC	6 cut(s)	93, 96, 118, 130, 298, 673
Sau3AI	GATC	3 cut(s)	371, 739, 796
Sau96I	GGNCC	3 cut(s)	273, 576, 651
SduI	GDGCHC	1 cut(s)	1297
SfaNI	GCATC	2 cut(s)	461, 540
SfcI	CTRYAG	1 cut(s)	192
SinI	GGWCC	1 cut(s)	651
SmiMI	CAYNNNNRTG	3 cut(s)	56, 975, 1147
SmlI	CTYRAG	2 cut(s)	713, 1205
SmoI	CTYRAG	2 cut(s)	713, 1205
SsiI	CCGC	1 cut(s)	298
SspI	AATATT	1 cut(s)	1114
SspMI	CTAG	2 cut(s)	1067, 1178
StyI	CCWWGG	2 cut(s)	523, 1142
TaaI	ACNGT	6 cut(s)	49, 55, 126, 167, 422, 776
TaiI	ACGT	2 cut(s)	66, 1128
TaqI	TCGA	4 cut(s)	157, 424, 454, 847
TauI	GCSGC	1 cut(s)	300
TfiI	GAWTC	3 cut(s)	691, 746, 1213
Tru1I	TTAA	3 cut(s)	944, 1026, 1122
Tru9I	TTAA	3 cut(s)	944, 1026, 1122
TscAI	CASTG	6 cut(s)	52, 58, 131, 172, 184, 793
TseFI	GTSAC	3 cut(s)	49, 205, 1126
TseI	GCWGC	5 cut(s)	92, 95, 117, 129, 672
Tsp45I	GTSAC	3 cut(s)	49, 205, 1126
TspDTI	ATGAA	1 cut(s)	828
TspGWI	ACGGA	2 cut(s)	90, 308
TspRI	CASTG	6 cut(s)	52, 58, 131, 172, 184, 793
Tth111I	GACNNNGTC	1 cut(s)	359
Van91I	CCANNNNNTGG	1 cut(s)	586
VpaK11BI	GGWCC	1 cut(s)	651
XapI	RAATTY	5 cut(s)	153, 182, 637, 834, 1087
XmiI	GTMKAC	1 cut(s)	847
XmnI	GAANNNNTTC	1 cut(s)	1089
XspI	CTAG	2 cut(s)	1067, 1178

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.