Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003005.1

Orthogroup ID

OG0007246

Physical Location & Seq

Genomic Coordinates Forward (+)

10664 .. 13160

Gene Structure 2497 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0003005.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1401 bp

atgaggaggagatcttctactctgcctgtggtggatgtgtttgtggtacttgttgcattgttcaccggtgctccgtttccatgggctgctgtcaagggcagtcatccacattgcaagaaattaagggaaaacttgggcgaaattcgacctcacagtgtcaccatcactgaatttggcgcagttggtgatggggtcactcttaacaccaaagcctttcagaatgccatcttctatctcaactctttttctgacaagggtggggccaagctttttgtccctgctggccggtggttgacaggaagcttccatctcatcagtcatctaaccttgtggttggatgaagatgcagtcattcttggatcaacgaactcagatgattggccagttgttgatcccttgccatcatatggtcgaggaagggagttgatgggggaaagacatcaaagcctcatctatgggcacaatttgaccgatgttatcataactggtcataatggaacgattgatggtcaaggcagcatttggtggaattcgttccgtaacaaaactctgaattatacaaggccccatttggtggagttgatgaactcaactggggttgtcatctcaaacctgactttcttaaattcaccattttggaccattcacccagtatactgcagccatgtttccgtccagaatctcacaatccttgctcctctcaattcaccaaacacggatgggatcgatccagactcttctgataatgtctgcattgaagactgttatataagcaccggtgatgatctgatctccatcaaaagtgggtgggatgagtatggcatttcatatggtcgtcccagtagaaacattctcattcgcgggattacggggaaaactcaaacaagtgcaggaatttcaattggaagtgagatgtctggaggtgtttcagaagttcatgcagaaaatctccattttttcggttctcatacaggtatcagaataaagacatctccgggaaggggtggttatgtcagaaatatctctgtgtcaaatatgaccttggatggtgtatatatagctataaggttcaccagtcactatggagaacacccagatgagtttttcgacccaagtgccctccctatcgtagaacagattacttttaaagatgtcataggcgataatatcaaaactgcaggcctcctagagggtttagaaggtggcagttttcagaacatttgcctatccaatattatcctcaatgtaacatcaaagtccccatggaactgctcttctattcatggatattcttactttgtttctccagaaatctgtcagcctctgaaggagagtatctcccctgagcattactcggattgttaccatctatcagatcagaaatggttttccagtgcataa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Glyco_hydro_28

Protein Analysis

466

Amino Acids

51.22

Weight (kDa)

5.85

Isoelectric Point (pI)

41.98

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007246)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G62110 AT3G62110
fragaria_vesca	FvH4_1g26220 FvH4_1g26220 FvH4_1g26220 FvH4_1g26220 FvH4_1g26220 FvH4_1g26220
malus_domestica	MD09G1290500.v1.1
prunus_persica	Prupe.3G002500_v2.0.a1 Prupe.3G002500_v2.0.a1 Prupe.3G002500_v2.0.a1 Prupe.3G002500_v2.0.a1
pyrus_communis	pycom09g19830 pycom17g28100
rosa_chinensis	RchiOBHm_Chr3g0485761
rosa_laevigata	RLG00000023127
rosa_multiflora	Rmu_sc0003005.1_g000001
rosa_roxburghii	Rroxscaffold_6G00396340
rosa_rugosa	Rorug03G0221200
rosa_samantha	Rh3AG270500 Rh3BG306000 Rh3CG304400 Rh3DG300500
rosa_wichuraiana	Rw3G024090

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	2 cut(s)	407, 574
AccI	GTMKAC	1 cut(s)	654
AccII	CGCG	1 cut(s)	861
AciI	CCGC	1 cut(s)	861
AclWI	GGATC	4 cut(s)	367, 386, 722, 731
AcoI	YGGCCR	2 cut(s)	283, 380
AcsI	RAATTY	5 cut(s)	141, 170, 529, 625, 894
AcuI	CTGAAG	1 cut(s)	1346
AfaI	GTAC	1 cut(s)	48
AfiI	CCNNNNNNNGG	4 cut(s)	407, 574, 1001, 1189
AgeI	ACCGGT	2 cut(s)	65, 776
AgsI	TTSAA	2 cut(s)	758, 900
AluBI	AGCT	3 cut(s)	268, 303, 1061
AluI	AGCT	3 cut(s)	268, 303, 1061
Alw21I	GWGCWC	1 cut(s)	73
AlwI	GGATC	4 cut(s)	367, 386, 722, 731
AlwNI	CAGNNNCTG	1 cut(s)	1324
AoxI	GGCC	5 cut(s)	261, 283, 380, 563, 1180
ApeKI	GCWGC	3 cut(s)	86, 516, 660
ApoI	RAATTY	5 cut(s)	141, 170, 529, 625, 894
AsiGI	ACCGGT	2 cut(s)	65, 776
Asp700I	GAANNNNTTC	1 cut(s)	533
AspLEI	GCGC	1 cut(s)	179
AspS9I	GGNCC	3 cut(s)	261, 564, 639
AsuC2I	CCSGG	1 cut(s)	996
AsuHPI	GGTGA	8 cut(s)	55, 151, 197, 621, 638, 699, 791, 1063
AvaII	GGWCC	1 cut(s)	639
BaeGI	GKGCMC	2 cut(s)	462, 1120
BalI	TGGCCA	1 cut(s)	382
BbsI	GAAGAC	1 cut(s)	765
Bbv12I	GWGCWC	1 cut(s)	73
BbvI	GCAGC	3 cut(s)	73, 528, 672
BcgI	CGANNNNNNTGC	2 cut(s)	1097, 1131
BcnI	CCSGG	1 cut(s)	996
BfaI	CTAG	1 cut(s)	1187
BfmI	CTRYAG	2 cut(s)	658, 1176
BglII	AGATCT	1 cut(s)	11
BisI	GCNGC	3 cut(s)	87, 517, 661
BlsI	GCNGC	3 cut(s)	88, 518, 662
Bme1390I	CCNGG	1 cut(s)	996
Bme18I	GGWCC	1 cut(s)	639
BmgT120I	GGNCC	3 cut(s)	261, 564, 639
BmiI	GGNNCC	2 cut(s)	262, 566
BmrFI	CCNGG	1 cut(s)	996
BmrI	ACTGGG	3 cut(s)	603, 644, 834
BmsI	GCATC	1 cut(s)	334
BmuI	ACTGGG	3 cut(s)	603, 644, 834
BpiI	GAAGAC	1 cut(s)	765
BplI	GAGNNNNNCTC	4 cut(s)	1322, 1354, 1337, 1369
BpmI	CTGGAG	2 cut(s)	939, 1290
Bpu10I	CCTNAGC	1 cut(s)	1344
BpuMI	CCSGG	1 cut(s)	996
Bsa29I	ATCGAT	1 cut(s)	726
BsaBI	GATNNNNATC	1 cut(s)	794
BsaJI	CCNNGG	3 cut(s)	80, 1041, 1262
BsaWI	WCCGGW	2 cut(s)	65, 776
BsaXI	ACNNNNNCTCC	2 cut(s)	55, 85
Bsc4I	CCNNNNNNNGG	4 cut(s)	407, 574, 1001, 1189
Bse118I	RCCGGY	3 cut(s)	65, 285, 776
Bse1I	ACTGG	7 cut(s)	383, 490, 598, 650, 840, 1074, 1392
Bse3DI	GCAATG	1 cut(s)	109
Bse8I	GATNNNNATC	1 cut(s)	794
BseCI	ATCGAT	1 cut(s)	726
BseDI	CCNNGG	3 cut(s)	80, 1041, 1262
BseGI	GGATG	6 cut(s)	40, 103, 343, 724, 817, 1051
BseJI	GATNNNNATC	1 cut(s)	794
BseLI	CCNNNNNNNGG	4 cut(s)	407, 574, 1001, 1189
BseMI	GCAATG	1 cut(s)	109
BseMII	CTCAG	2 cut(s)	384, 1335
BseNI	ACTGG	7 cut(s)	383, 490, 598, 650, 840, 1074, 1392
BseRI	GAGGAG	3 cut(s)	19, 22, 687
BseSI	GKGCMC	2 cut(s)	462, 1120
BseXI	GCAGC	3 cut(s)	73, 528, 672
BsgI	GTGCAG	1 cut(s)	909
Bsh1236I	CGCG	1 cut(s)	861
BshFI	GGCC	5 cut(s)	263, 285, 382, 565, 1182
BshTI	ACCGGT	2 cut(s)	65, 776
BshVI	ATCGAT	1 cut(s)	726
BsiHKAI	GWGCWC	1 cut(s)	73
BsiSI	CCGG	4 cut(s)	66, 286, 777, 995
BslFI	GGGAC	3 cut(s)	260, 822, 1243
BslI	CCNNNNNNNGG	4 cut(s)	407, 574, 1001, 1189
BsmFI	GGGAC	3 cut(s)	260, 822, 1243
BsmI	GAATGC	1 cut(s)	226
BsnI	GGCC	5 cut(s)	263, 285, 382, 565, 1182
Bsp1286I	GDGCHC	3 cut(s)	73, 462, 1120
Bsp143I	GATC	8 cut(s)	11, 359, 391, 723, 727, 784, 789, 1375
Bsp19I	CCATGG	2 cut(s)	80, 1262
BspACI	CCGC	1 cut(s)	861
BspANI	GGCC	5 cut(s)	263, 285, 382, 565, 1182
BspCNI	CTCAG	2 cut(s)	383, 1336
BspDI	ATCGAT	1 cut(s)	726
BspFNI	CGCG	1 cut(s)	861
BspLI	GGNNCC	2 cut(s)	262, 566
BspMAI	CTGCAG	2 cut(s)	662, 1180
BspPI	GGATC	4 cut(s)	367, 386, 722, 731
BspQI	GCTCTTC	1 cut(s)	1279
BsrDI	GCAATG	1 cut(s)	109
BsrFI	RCCGGY	3 cut(s)	65, 285, 776
BsrI	ACTGG	7 cut(s)	383, 490, 598, 650, 840, 1074, 1392
BssAI	RCCGGY	3 cut(s)	65, 285, 776
BssECI	CCNNGG	3 cut(s)	80, 1041, 1262
BssMI	GATC	8 cut(s)	11, 359, 391, 723, 727, 784, 789, 1375
BssNAI	GTATAC	1 cut(s)	655
BssT1I	CCWWGG	3 cut(s)	80, 1041, 1262
Bst1107I	GTATAC	1 cut(s)	655
Bst4CI	ACNGT	2 cut(s)	155, 764
Bst6I	CTCTTC	2 cut(s)	742, 1279
BstC8I	GCNNGC	2 cut(s)	283, 1180
BstDEI	CTNAG	2 cut(s)	370, 1344
BstDSI	CCRYGG	2 cut(s)	80, 1262
BstENI	CCTNNNNNAGG	1 cut(s)	1187
BstF5I	GGATG	6 cut(s)	40, 103, 343, 724, 817, 1051
BstFNI	CGCG	1 cut(s)	861
BstHHI	GCGC	1 cut(s)	179
BstKTI	GATC	8 cut(s)	14, 362, 394, 726, 730, 787, 792, 1378
BstMBI	GATC	8 cut(s)	11, 359, 391, 723, 727, 784, 789, 1375
BstSCI	CCNGG	1 cut(s)	994
BstSFI	CTRYAG	2 cut(s)	658, 1176
BstSLI	GKGCMC	2 cut(s)	462, 1120
BstUI	CGCG	1 cut(s)	861
BstV1I	GCAGC	3 cut(s)	73, 528, 672
BstV2I	GAAGAC	1 cut(s)	765
BstX2I	RGATCY	1 cut(s)	11
BstYI	RGATCY	1 cut(s)	11
BstZ17I	GTATAC	1 cut(s)	655
Bsu15I	ATCGAT	1 cut(s)	726
BsuRI	GGCC	5 cut(s)	263, 285, 382, 565, 1182
BsuTUI	ATCGAT	1 cut(s)	726
BtgI	CCRYGG	2 cut(s)	80, 1262
BtsCI	GGATG	6 cut(s)	40, 103, 343, 724, 817, 1051
BtsIMutI	CAGTG	3 cut(s)	160, 165, 1399
Cac8I	GCNNGC	2 cut(s)	283, 1180
CaiI	CAGNNNCTG	1 cut(s)	1324
CfoI	GCGC	1 cut(s)	179
Cfr10I	RCCGGY	3 cut(s)	65, 285, 776
Cfr13I	GGNCC	3 cut(s)	261, 564, 639
ClaI	ATCGAT	1 cut(s)	726
Csp6I	GTAC	1 cut(s)	47
CspAI	ACCGGT	2 cut(s)	65, 776
CviAII	CATG	5 cut(s)	81, 665, 938, 1263, 1283
CviQI	GTAC	1 cut(s)	47
DdeI	CTNAG	2 cut(s)	370, 1344
DpnI	GATC	8 cut(s)	13, 361, 393, 725, 729, 786, 791, 1377
DpnII	GATC	8 cut(s)	11, 359, 391, 723, 727, 784, 789, 1375
DraI	TTTAAA	1 cut(s)	1147
EaeI	YGGCCR	2 cut(s)	283, 380
Eam1104I	CTCTTC	2 cut(s)	742, 1279
EarI	CTCTTC	2 cut(s)	742, 1279
Eco130I	CCWWGG	3 cut(s)	80, 1041, 1262
Eco147I	AGGCCT	1 cut(s)	1182
Eco47I	GGWCC	1 cut(s)	639
Eco57I	CTGAAG	1 cut(s)	1346
EcoNI	CCTNNNNNAGG	1 cut(s)	1187
EcoO109I	RGGNCCY	1 cut(s)	564
EcoRI	GAATTC	1 cut(s)	529
EcoT14I	CCWWGG	3 cut(s)	80, 1041, 1262
ErhI	CCWWGG	3 cut(s)	80, 1041, 1262
FaeI	CATG	5 cut(s)	84, 668, 941, 1266, 1286
FaqI	GGGAC	3 cut(s)	260, 822, 1243
FatI	CATG	5 cut(s)	80, 664, 937, 1262, 1282
FauI	CCCGC	1 cut(s)	854
FauNDI	CATATG	2 cut(s)	406, 829
FblI	GTMKAC	1 cut(s)	654
Fnu4HI	GCNGC	3 cut(s)	87, 517, 661
FokI	GGATG	6 cut(s)	47, 90, 350, 731, 824, 1058
Fsp4HI	GCNGC	3 cut(s)	87, 517, 661
FspBI	CTAG	1 cut(s)	1187
GlaI	GCGC	1 cut(s)	178
GluI	GCNGC	3 cut(s)	87, 517, 661
GsuI	CTGGAG	2 cut(s)	939, 1290
HaeIII	GGCC	5 cut(s)	263, 285, 382, 565, 1182
HapII	CCGG	4 cut(s)	66, 286, 777, 995
HhaI	GCGC	1 cut(s)	179
Hin1II	CATG	5 cut(s)	84, 668, 941, 1266, 1286
Hin6I	GCGC	1 cut(s)	177
HinP1I	GCGC	1 cut(s)	177
HincII	GTYRAC	1 cut(s)	294
HindII	GTYRAC	1 cut(s)	294
HindIII	AAGCTT	2 cut(s)	266, 301
HinfI	GANTC	2 cut(s)	679, 734
HpaII	CCGG	4 cut(s)	66, 286, 777, 995
HphI	GGTGA	8 cut(s)	55, 151, 197, 621, 638, 699, 791, 1063
Hpy166II	GTNNAC	4 cut(s)	63, 294, 655, 1071
Hpy188III	TCNNGA	4 cut(s)	676, 731, 918, 1307
Hpy8I	GTNNAC	4 cut(s)	63, 294, 655, 1071
HpyAV	CCTTC	4 cut(s)	411, 993, 1193, 1321
HpyCH4III	ACNGT	2 cut(s)	155, 764
HpyCH4V	TGCA	9 cut(s)	56, 114, 347, 660, 753, 890, 941, 1178, 1397
HpyF3I	CTNAG	2 cut(s)	370, 1344
Hsp92II	CATG	5 cut(s)	84, 668, 941, 1266, 1286
HspAI	GCGC	1 cut(s)	177
Kzo9I	GATC	8 cut(s)	11, 359, 391, 723, 727, 784, 789, 1375
LguI	GCTCTTC	1 cut(s)	1279
LmnI	GCTCC	2 cut(s)	76, 700
Lsp1109I	GCAGC	3 cut(s)	73, 528, 672
LweI	GCATC	1 cut(s)	334
MaeI	CTAG	1 cut(s)	1187
MaeIII	GTNAC	6 cut(s)	157, 193, 539, 1076, 1246, 1361
MalI	GATC	8 cut(s)	13, 361, 393, 725, 729, 786, 791, 1377
MboI	GATC	8 cut(s)	11, 359, 391, 723, 727, 784, 789, 1375
MboII	GAAGA	6 cut(s)	6, 220, 353, 729, 770, 1266
MfeI	CAATTG	1 cut(s)	900
MflI	RGATCY	1 cut(s)	11
MhlI	GDGCHC	3 cut(s)	73, 462, 1120
MlsI	TGGCCA	1 cut(s)	382
MluNI	TGGCCA	1 cut(s)	382
MlyI	GAGTC	1 cut(s)	728
MmeI	TCCRAC	1 cut(s)	315
Mox20I	TGGCCA	1 cut(s)	382
MroXI	GAANNNNTTC	1 cut(s)	533
MscI	TGGCCA	1 cut(s)	382
MseI	TTAA	4 cut(s)	122, 201, 623, 1146
MslI	CAYNNNNRTG	1 cut(s)	1095
Msp20I	TGGCCA	1 cut(s)	382
MspI	CCGG	4 cut(s)	66, 286, 777, 995
MspR9I	CCNGG	1 cut(s)	996
MunI	CAATTG	1 cut(s)	900
Mva1269I	GAATGC	1 cut(s)	226
MvnI	CGCG	1 cut(s)	861
NciI	CCSGG	1 cut(s)	996
NcoI	CCATGG	2 cut(s)	80, 1262
NdeI	CATATG	2 cut(s)	406, 829
NdeII	GATC	8 cut(s)	11, 359, 391, 723, 727, 784, 789, 1375
NlaIII	CATG	5 cut(s)	84, 668, 941, 1266, 1286
NlaIV	GGNNCC	2 cut(s)	262, 566
NmuCI	GTSAC	3 cut(s)	157, 193, 1076
PceI	AGGCCT	1 cut(s)	1182
PciSI	GCTCTTC	1 cut(s)	1279
PctI	GAATGC	1 cut(s)	226
PdmI	GAANNNNTTC	1 cut(s)	533
PfeI	GAWTC	1 cut(s)	679
PflMI	CCANNNNNTGG	2 cut(s)	407, 574
PfoI	TCCNGGA	1 cut(s)	994
PinAI	ACCGGT	2 cut(s)	65, 776
PkrI	GCNGC	3 cut(s)	88, 518, 662
PleI	GAGTC	1 cut(s)	728
PpsI	GAGTC	1 cut(s)	728
PspN4I	GGNNCC	2 cut(s)	262, 566
PspPI	GGNCC	3 cut(s)	261, 564, 639
PstI	CTGCAG	2 cut(s)	662, 1180
PstNI	CAGNNNCTG	1 cut(s)	1324
PsuI	RGATCY	1 cut(s)	11
RsaI	GTAC	1 cut(s)	48
RsaNI	GTAC	1 cut(s)	47
RseI	CAYNNNNRTG	1 cut(s)	1095
SapI	GCTCTTC	1 cut(s)	1279
SaqAI	TTAA	4 cut(s)	122, 201, 623, 1146
SatI	GCNGC	3 cut(s)	87, 517, 661
Sau3AI	GATC	8 cut(s)	11, 359, 391, 723, 727, 784, 789, 1375
Sau96I	GGNCC	3 cut(s)	261, 564, 639
SchI	GAGTC	1 cut(s)	728
ScrFI	CCNGG	1 cut(s)	996
SduI	GDGCHC	3 cut(s)	73, 462, 1120
SfaNI	GCATC	1 cut(s)	334
SfcI	CTRYAG	2 cut(s)	658, 1176
SgrAI	CRCCGGYG	2 cut(s)	65, 776
SinI	GGWCC	1 cut(s)	639
SmiMI	CAYNNNNRTG	1 cut(s)	1095
SseBI	AGGCCT	1 cut(s)	1182
SsiI	CCGC	1 cut(s)	861
SspI	AATATT	1 cut(s)	1234
SspMI	CTAG	1 cut(s)	1187
StuI	AGGCCT	1 cut(s)	1182
StyD4I	CCNGG	1 cut(s)	994
StyI	CCWWGG	3 cut(s)	80, 1041, 1262
TaaI	ACNGT	2 cut(s)	155, 764
TaqI	TCGA	4 cut(s)	145, 412, 726, 1107
TaqII	GACCGA	1 cut(s)	485
TfiI	GAWTC	1 cut(s)	679
Tru1I	TTAA	4 cut(s)	122, 201, 623, 1146
Tru9I	TTAA	4 cut(s)	122, 201, 623, 1146
TscAI	CASTG	3 cut(s)	160, 172, 1399
TseFI	GTSAC	3 cut(s)	157, 193, 1076
TseI	GCWGC	3 cut(s)	86, 516, 660
Tsp45I	GTSAC	3 cut(s)	157, 193, 1076
TspDTI	ATGAA	5 cut(s)	354, 599, 816, 926, 1271
TspGWI	ACGGA	4 cut(s)	63, 527, 661, 731
TspRI	CASTG	3 cut(s)	160, 172, 1399
Van91I	CCANNNNNTGG	2 cut(s)	407, 574
VpaK11BI	GGWCC	1 cut(s)	639
XagI	CCTNNNNNAGG	1 cut(s)	1187
XapI	RAATTY	5 cut(s)	141, 170, 529, 625, 894
XmiI	GTMKAC	1 cut(s)	654
XmnI	GAANNNNTTC	1 cut(s)	533
XspI	CTAG	1 cut(s)	1187

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.