Rh3DG300500

Glycosyl hydrolases family 28

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3D
OG0007246
Physical Location & Seq
Reverse (-)
31655255 .. 31658580
3326 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3DG300500.1

Sequence Viewer

Length: 990 bp
ATGATGAGGAATTGTCTCCACATGTGCATTTGGCTTTATAAATTGATGTTGCTGACTTGCTGTTCTCTTCATGCAGGTCATAATGGAACGATTGATGGTCAAGGCAGCATTTGGTGGAATTCGTTCCGTAACAAAACTCTGAATTATACAAGGCCCCATTTGGTGGAGTTGATGAACTCAACTGGGGTTGTCATCTCAAACCTGACTTTCTTAAATTCACCATTTTGGACCATTCACCCAGTATACTGCAGCCATGTTTCCGTCCAGAATCTCACAATCCTTGCTCCTCTCAATTCACCAAACACGGATGGGATCGATCCAGACTCTTCTGATAATGTCTGCATTGAAGACTGTTATATAAGCACCGGTGATGATCTGATCTCCATCAAAAGTGGGTGGGATGAGTATGGCATTTCATATGGTCGTCCCAGTAGAAACATTCTCATTCGCGGGATTACGGGGAAAACTCAAACAAGTGCAGGAATTTCAATTGGAAGTGAGATGTCTGGAGGTGTTTCAGAAGTTCATGCAGAAAATCTCCATTTTTTCGGTTCTCATACAGGTATCAGAATAAAGACATCTCCGGGAAGGGGTGGTTATGTCAGAAATATCTCTGTGTCAAATATGACCTTGGATGGTGTATATATAGCTATAAGGTTCACCAGTCACTATGGAGAACACCCAGATGAGTTTTTCGACCCAAGTGCCCTCCCTATCGTAGAACAGATTACTTTTAAAGATGTCATAGGCGATAATATCAAAACTGCAGGCCTCCTAGAGGGTTTAGAAGGTGGCAGTTTTCAGAACATTTGCCTATCCAATATTATCCTCAATGTAACATCAAAGTCCCCATGGAACTGCTCTTCTATTCATGGATATTCTTACTTTGTTTCTCCAGAAATCTGTCAGCCTCTGAAGGAGAGTATCTCCCCTGAGCATTACTCGGATTGTTACCATCTATCAGATCAGAAATGGTTTTCCAGTGCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Glyco_hydro_28

Protein Analysis

329

Amino Acids

36.39

Weight (kDa)

5.72

Isoelectric Point (pI)

41.41

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glyco_hydro_28 PF00295 27 - 291 2.7e-42 Glycosyl hydrolases family 28
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 39
Acc36I ACCTGC 1 cut(s) 65
AccB7I CCANNNNNTGG 1 cut(s) 163
AccI GTMKAC 1 cut(s) 243
AccII CGCG 1 cut(s) 450
AciI CCGC 1 cut(s) 450
AclWI GGATC 2 cut(s) 311, 320
AcsI RAATTY 3 cut(s) 118, 214, 483
AcuI CTGAAG 1 cut(s) 935
AfiI CCNNNNNNNGG 3 cut(s) 163, 590, 778
AflIII ACRYGT 1 cut(s) 21
AgeI ACCGGT 1 cut(s) 365
AgsI TTSAA 2 cut(s) 347, 489
AluBI AGCT 1 cut(s) 650
AluI AGCT 1 cut(s) 650
Alw26I GTCTC 1 cut(s) 20
AlwI GGATC 2 cut(s) 311, 320
AlwNI CAGNNNCTG 1 cut(s) 913
AoxI GGCC 2 cut(s) 152, 769
ApeKI GCWGC 2 cut(s) 105, 249
ApoI RAATTY 3 cut(s) 118, 214, 483
AsiGI ACCGGT 1 cut(s) 365
Asp700I GAANNNNTTC 1 cut(s) 122
AspS9I GGNCC 2 cut(s) 153, 228
AsuC2I CCSGG 1 cut(s) 585
AsuHPI GGTGA 5 cut(s) 210, 227, 288, 380, 652
AvaII GGWCC 1 cut(s) 228
BaeGI GKGCMC 1 cut(s) 709
BbsI GAAGAC 1 cut(s) 354
BbvI GCAGC 2 cut(s) 117, 261
BccI CCATC 5 cut(s) 89, 302, 392, 629, 963
BcgI CGANNNNNNTGC 2 cut(s) 686, 720
BcnI CCSGG 1 cut(s) 585
BcoDI GTCTC 1 cut(s) 20
BfaI CTAG 1 cut(s) 776
BfmI CTRYAG 2 cut(s) 247, 765
BfuAI ACCTGC 1 cut(s) 65
BisI GCNGC 2 cut(s) 106, 250
BlsI GCNGC 2 cut(s) 107, 251
Bme1390I CCNGG 1 cut(s) 585
Bme18I GGWCC 1 cut(s) 228
BmgT120I GGNCC 2 cut(s) 153, 228
BmiI GGNNCC 1 cut(s) 155
BmrFI CCNGG 1 cut(s) 585
BmrI ACTGGG 3 cut(s) 192, 233, 423
BmuI ACTGGG 3 cut(s) 192, 233, 423
BpiI GAAGAC 1 cut(s) 354
BplI GAGNNNNNCTC 4 cut(s) 911, 943, 926, 958
BpmI CTGGAG 2 cut(s) 528, 879
Bpu10I CCTNAGC 1 cut(s) 933
BpuMI CCSGG 1 cut(s) 585
Bsa29I ATCGAT 1 cut(s) 315
BsaBI GATNNNNATC 1 cut(s) 383
BsaJI CCNNGG 2 cut(s) 630, 851
BsaWI WCCGGW 1 cut(s) 365
Bsc4I CCNNNNNNNGG 3 cut(s) 163, 590, 778
Bse118I RCCGGY 1 cut(s) 365
Bse1I ACTGG 5 cut(s) 187, 239, 429, 663, 981
Bse8I GATNNNNATC 1 cut(s) 383
BseCI ATCGAT 1 cut(s) 315
BseDI CCNNGG 2 cut(s) 630, 851
BseGI GGATG 3 cut(s) 313, 406, 640
BseJI GATNNNNATC 1 cut(s) 383
BseLI CCNNNNNNNGG 3 cut(s) 163, 590, 778
BseMII CTCAG 1 cut(s) 924
BseNI ACTGG 5 cut(s) 187, 239, 429, 663, 981
BseRI GAGGAG 1 cut(s) 276
BseSI GKGCMC 1 cut(s) 709
BseXI GCAGC 2 cut(s) 117, 261
BsgI GTGCAG 1 cut(s) 498
Bsh1236I CGCG 1 cut(s) 450
BshFI GGCC 2 cut(s) 154, 771
BshTI ACCGGT 1 cut(s) 365
BshVI ATCGAT 1 cut(s) 315
BsiSI CCGG 2 cut(s) 366, 584
BslFI GGGAC 2 cut(s) 411, 832
BslI CCNNNNNNNGG 3 cut(s) 163, 590, 778
BsmAI GTCTC 1 cut(s) 20
BsmFI GGGAC 2 cut(s) 411, 832
BsnI GGCC 2 cut(s) 154, 771
Bsp1286I GDGCHC 1 cut(s) 709
Bsp143I GATC 5 cut(s) 312, 316, 373, 378, 964
Bsp19I CCATGG 1 cut(s) 851
BspACI CCGC 1 cut(s) 450
BspANI GGCC 2 cut(s) 154, 771
BspCNI CTCAG 1 cut(s) 925
BspDI ATCGAT 1 cut(s) 315
BspFNI CGCG 1 cut(s) 450
BspLI GGNNCC 1 cut(s) 155
BspMAI CTGCAG 2 cut(s) 251, 769
BspMI ACCTGC 1 cut(s) 65
BspPI GGATC 2 cut(s) 311, 320
BspQI GCTCTTC 1 cut(s) 868
BsrFI RCCGGY 1 cut(s) 365
BsrI ACTGG 5 cut(s) 187, 239, 429, 663, 981
BssAI RCCGGY 1 cut(s) 365
BssECI CCNNGG 2 cut(s) 630, 851
BssMI GATC 5 cut(s) 312, 316, 373, 378, 964
BssNAI GTATAC 1 cut(s) 244
BssT1I CCWWGG 2 cut(s) 630, 851
Bst1107I GTATAC 1 cut(s) 244
Bst4CI ACNGT 1 cut(s) 353
Bst6I CTCTTC 3 cut(s) 72, 331, 868
BstC8I GCNNGC 1 cut(s) 769
BstDEI CTNAG 1 cut(s) 933
BstDSI CCRYGG 1 cut(s) 851
BstENI CCTNNNNNAGG 1 cut(s) 776
BstF5I GGATG 3 cut(s) 313, 406, 640
BstFNI CGCG 1 cut(s) 450
BstKTI GATC 5 cut(s) 315, 319, 376, 381, 967
BstMAI GTCTC 1 cut(s) 20
BstMBI GATC 5 cut(s) 312, 316, 373, 378, 964
BstNSI RCATGY 1 cut(s) 25
BstSCI CCNGG 1 cut(s) 583
BstSFI CTRYAG 2 cut(s) 247, 765
BstSLI GKGCMC 1 cut(s) 709
BstUI CGCG 1 cut(s) 450
BstV1I GCAGC 2 cut(s) 117, 261
BstV2I GAAGAC 1 cut(s) 354
BstZ17I GTATAC 1 cut(s) 244
Bsu15I ATCGAT 1 cut(s) 315
BsuRI GGCC 2 cut(s) 154, 771
BsuTUI ATCGAT 1 cut(s) 315
BtgI CCRYGG 1 cut(s) 851
BtsCI GGATG 3 cut(s) 313, 406, 640
BtsIMutI CAGTG 1 cut(s) 988
BveI ACCTGC 1 cut(s) 65
Cac8I GCNNGC 1 cut(s) 769
CaiI CAGNNNCTG 1 cut(s) 913
Cfr10I RCCGGY 1 cut(s) 365
Cfr13I GGNCC 2 cut(s) 153, 228
ClaI ATCGAT 1 cut(s) 315
CspAI ACCGGT 1 cut(s) 365
CviAII CATG 6 cut(s) 22, 71, 254, 527, 852, 872
CviJI RGCY 6 cut(s) 34, 154, 252, 650, 771, 910
CviKI_1 RGCY 6 cut(s) 34, 154, 252, 650, 771, 910
DdeI CTNAG 1 cut(s) 933
DpnI GATC 5 cut(s) 314, 318, 375, 380, 966
DpnII GATC 5 cut(s) 312, 316, 373, 378, 964
DraI TTTAAA 1 cut(s) 736
Eam1104I CTCTTC 3 cut(s) 72, 331, 868
EarI CTCTTC 3 cut(s) 72, 331, 868
Eco130I CCWWGG 2 cut(s) 630, 851
Eco147I AGGCCT 1 cut(s) 771
Eco47I GGWCC 1 cut(s) 228
Eco57I CTGAAG 1 cut(s) 935
EcoNI CCTNNNNNAGG 1 cut(s) 776
EcoO109I RGGNCCY 1 cut(s) 153
EcoRI GAATTC 1 cut(s) 118
EcoT14I CCWWGG 2 cut(s) 630, 851
ErhI CCWWGG 2 cut(s) 630, 851
FaeI CATG 6 cut(s) 25, 74, 257, 530, 855, 875
FaqI GGGAC 2 cut(s) 411, 832
FatI CATG 6 cut(s) 21, 70, 253, 526, 851, 871
FauI CCCGC 1 cut(s) 443
FauNDI CATATG 1 cut(s) 418
FblI GTMKAC 1 cut(s) 243
Fnu4HI GCNGC 2 cut(s) 106, 250
FokI GGATG 3 cut(s) 320, 413, 647
Fsp4HI GCNGC 2 cut(s) 106, 250
FspBI CTAG 1 cut(s) 776
GluI GCNGC 2 cut(s) 106, 250
GsuI CTGGAG 2 cut(s) 528, 879
HaeIII GGCC 2 cut(s) 154, 771
HapII CCGG 2 cut(s) 366, 584
Hin1II CATG 6 cut(s) 25, 74, 257, 530, 855, 875
HinfI GANTC 2 cut(s) 268, 323
HpaII CCGG 2 cut(s) 366, 584
HphI GGTGA 5 cut(s) 210, 227, 288, 380, 652
Hpy166II GTNNAC 2 cut(s) 244, 660
Hpy188III TCNNGA 4 cut(s) 265, 320, 507, 896
Hpy8I GTNNAC 2 cut(s) 244, 660
HpyAV CCTTC 3 cut(s) 582, 782, 910
HpyCH4III ACNGT 1 cut(s) 353
HpyCH4V TGCA 8 cut(s) 27, 74, 249, 342, 479, 530, 767, 986
HpyF3I CTNAG 1 cut(s) 933
Hsp92II CATG 6 cut(s) 25, 74, 257, 530, 855, 875
Kzo9I GATC 5 cut(s) 312, 316, 373, 378, 964
LguI GCTCTTC 1 cut(s) 868
LmnI GCTCC 1 cut(s) 289
Lsp1109I GCAGC 2 cut(s) 117, 261
MaeI CTAG 1 cut(s) 776
MaeIII GTNAC 4 cut(s) 128, 665, 835, 950
MalI GATC 5 cut(s) 314, 318, 375, 380, 966
MboI GATC 5 cut(s) 312, 316, 373, 378, 964
MboII GAAGA 4 cut(s) 59, 318, 359, 855
MfeI CAATTG 1 cut(s) 489
MhlI GDGCHC 1 cut(s) 709
MluCI AATT 8 cut(s) 10, 41, 118, 142, 214, 292, 483, 489
MlyI GAGTC 1 cut(s) 317
MnlI CCTC 7 cut(s) 297, 503, 719, 772, 782, 839, 921
MroXI GAANNNNTTC 1 cut(s) 122
MseI TTAA 2 cut(s) 212, 735
MslI CAYNNNNRTG 1 cut(s) 684
MspI CCGG 2 cut(s) 366, 584
MspR9I CCNGG 1 cut(s) 585
MunI CAATTG 1 cut(s) 489
MvnI CGCG 1 cut(s) 450
NciI CCSGG 1 cut(s) 585
NcoI CCATGG 1 cut(s) 851
NdeI CATATG 1 cut(s) 418
NdeII GATC 5 cut(s) 312, 316, 373, 378, 964
NlaIII CATG 6 cut(s) 25, 74, 257, 530, 855, 875
NlaIV GGNNCC 1 cut(s) 155
NmuCI GTSAC 1 cut(s) 665
NspI RCATGY 1 cut(s) 25
PceI AGGCCT 1 cut(s) 771
PciI ACATGT 1 cut(s) 21
PciSI GCTCTTC 1 cut(s) 868
PdmI GAANNNNTTC 1 cut(s) 122
PfeI GAWTC 1 cut(s) 268
PflMI CCANNNNNTGG 1 cut(s) 163
PfoI TCCNGGA 1 cut(s) 583
PinAI ACCGGT 1 cut(s) 365
PkrI GCNGC 2 cut(s) 107, 251
PleI GAGTC 1 cut(s) 317
PpsI GAGTC 1 cut(s) 317
PscI ACATGT 1 cut(s) 21
PsiI TTATAA 1 cut(s) 39
PspN4I GGNNCC 1 cut(s) 155
PspPI GGNCC 2 cut(s) 153, 228
PstI CTGCAG 2 cut(s) 251, 769
PstNI CAGNNNCTG 1 cut(s) 913
RseI CAYNNNNRTG 1 cut(s) 684
SapI GCTCTTC 1 cut(s) 868
SaqAI TTAA 2 cut(s) 212, 735
SatI GCNGC 2 cut(s) 106, 250
Sau3AI GATC 5 cut(s) 312, 316, 373, 378, 964
Sau96I GGNCC 2 cut(s) 153, 228
SchI GAGTC 1 cut(s) 317
ScrFI CCNGG 1 cut(s) 585
SduI GDGCHC 1 cut(s) 709
SetI ASST 8 cut(s) 79, 204, 514, 565, 632, 652, 659, 793
SfcI CTRYAG 2 cut(s) 247, 765
SgrAI CRCCGGYG 1 cut(s) 365
SinI GGWCC 1 cut(s) 228
SmiMI CAYNNNNRTG 1 cut(s) 684
Sse9I AATT 8 cut(s) 10, 41, 118, 142, 214, 292, 483, 489
SseBI AGGCCT 1 cut(s) 771
SsiI CCGC 1 cut(s) 450
SspI AATATT 1 cut(s) 823
SspMI CTAG 1 cut(s) 776
StuI AGGCCT 1 cut(s) 771
StyD4I CCNGG 1 cut(s) 583
StyI CCWWGG 2 cut(s) 630, 851
TaaI ACNGT 1 cut(s) 353
TaqI TCGA 2 cut(s) 315, 696
TasI AATT 8 cut(s) 10, 41, 118, 142, 214, 292, 483, 489
TfiI GAWTC 1 cut(s) 268
Tru1I TTAA 2 cut(s) 212, 735
Tru9I TTAA 2 cut(s) 212, 735
TscAI CASTG 1 cut(s) 988
TseFI GTSAC 1 cut(s) 665
TseI GCWGC 2 cut(s) 105, 249
Tsp45I GTSAC 1 cut(s) 665
TspDTI ATGAA 5 cut(s) 59, 188, 405, 515, 860
TspGWI ACGGA 3 cut(s) 116, 250, 320
TspRI CASTG 1 cut(s) 988
Van91I CCANNNNNTGG 1 cut(s) 163
VpaK11BI GGWCC 1 cut(s) 228
XagI CCTNNNNNAGG 1 cut(s) 776
XapI RAATTY 3 cut(s) 118, 214, 483
XceI RCATGY 1 cut(s) 25
XmiI GTMKAC 1 cut(s) 243
XmnI GAANNNNTTC 1 cut(s) 122
XspI CTAG 1 cut(s) 776
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.