Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000003

Orthogroup ID

OG0007246

Physical Location & Seq

Genomic Coordinates Reverse (-)

20187299 .. 20188986

Gene Structure 1688 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug03G0221200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1104 bp

ATGTCCAGAAAAACCCTTGTCACTACTTCATTTAAGACACTTTATGTGTCTCTGGATCTTCTTTCGTACTTGAAATCTAAGCAGGTCACACCATTCCAGATTTTCAATGACGTTATCATGCCAGATTTTGAAGACCATACATCCAACGGAAACCACAGCACCAATAGTGATGAAATGAAAATGATACTTCAAGAAATCCAGAATGATCTCATTTCCATCAGTGGGGCCTGTGGGGGATTGCAGAAATGGGAAGATGATGTTAAATGTGCTATCAAAGAATTAGCTCTCCAAAGCTTAGATGATGCCTTCAAAGAAAGAACAGAGGCACTGAAAAATTCCAACATCAAGTTAAATTCTGAAACCTTACAACTTTCAAATACCCCTACGCTGGTGAGGAACTACGAGGAGTTCACAGATACTTTGAGCAAAGAAGGCAAAACTGCTAAGGAGACCGGGAATGAATTCTTTAAATTGTTTATGGAGAAAAGCCTTATCCAGCCTGTCTACGAAAAGCGCAGGCTAAGTGCAGACAGCTGCAGCATGCAGCCTAAAACTCGTGAAGCTGTGATCAAGCTTGCAAAGAAAACCAGATTCTTCACAAATGGAAATTCAACGAAAGATTTCTCTTCCTCTAAGAGGACATGCCTGCTCGGGAGATGGCAAAGCTCAGCAAAGCATCTCACTGAAGTAGAGGACAGTGAATTCCTAAAAGGCTTGAAGAATATGAGTCATCTCTGGTCTGGAGGCCATGACTGTAAGCTAGATGACTTGACAAAATTGGAAAATCCAAGGAAGCTGAGTATCCACATAGACAGAGAGCAAGCTGAAACAGCTGAAAGAGAGCTGAATTCTTTGGCGAAGTTCAATAACCTCCGGTCACTATCCATATTATGGTCACAAATATATGGCAAGACTGCAACTCGAACTCTCCAGAGGACATTCACCGAGAAGGTGCAGAGGACACTCACCAAGAAGCTGACCAGAATGAAAAAAGTAACAAAACTGCTTTCAATAGCTCCGTTAACGGTTCCATCAGTTACTCCAGATTCTCCATTCACTGTTCTTTTGGAGAAACTTGACCTCTATTACTTCCCTCAAATCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Glyco_hydro_28

Protein Analysis

367

Amino Acids

41.96

Weight (kDa)

9.11

Isoelectric Point (pI)

41.69

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007246)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G62110 AT3G62110
fragaria_vesca	FvH4_1g26220 FvH4_1g26220 FvH4_1g26220 FvH4_1g26220 FvH4_1g26220 FvH4_1g26220
malus_domestica	MD09G1290500.v1.1
prunus_persica	Prupe.3G002500_v2.0.a1 Prupe.3G002500_v2.0.a1 Prupe.3G002500_v2.0.a1 Prupe.3G002500_v2.0.a1
pyrus_communis	pycom09g19830 pycom17g28100
rosa_chinensis	RchiOBHm_Chr3g0485761
rosa_laevigata	RLG00000023127
rosa_multiflora	Rmu_sc0003005.1_g000001
rosa_roxburghii	Rroxscaffold_6G00396340
rosa_rugosa	Rorug03G0221200
rosa_samantha	Rh3AG270500 Rh3BG306000 Rh3CG304400 Rh3DG300500
rosa_wichuraiana	Rw3G024090

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	73
AccB7I	CCANNNNNTGG	1 cut(s)	891
AccI	GTMKAC	1 cut(s)	504
AclWI	GGATC	1 cut(s)	63
AcsI	RAATTY	6 cut(s)	334, 352, 461, 607, 701, 847
AcuI	CTGAAG	1 cut(s)	705
AfaI	GTAC	1 cut(s)	68
AfiI	CCNNNNNNNGG	4 cut(s)	222, 388, 636, 891
Alw26I	GTCTC	2 cut(s)	54, 443
AlwI	GGATC	1 cut(s)	63
Ama87I	CYCGRG	1 cut(s)	650
AoxI	GGCC	2 cut(s)	225, 745
ApeKI	GCWGC	3 cut(s)	534, 537, 544
ApoI	RAATTY	6 cut(s)	334, 352, 461, 607, 701, 847
Asp700I	GAANNNNTTC	2 cut(s)	461, 620
AspLEI	GCGC	1 cut(s)	516
AspS9I	GGNCC	1 cut(s)	225
AsuC2I	CCSGG	1 cut(s)	454
AsuHPI	GGTGA	3 cut(s)	403, 934, 958
AvaI	CYCGRG	1 cut(s)	650
BauI	CACGAG	1 cut(s)	555
BbsI	GAAGAC	1 cut(s)	138
BbvI	GCAGC	3 cut(s)	521, 549, 556
BccI	CCATC	3 cut(s)	224, 651, 1039
BciVI	GTATCC	1 cut(s)	812
BclI	TGATCA	1 cut(s)	567
BcnI	CCSGG	1 cut(s)	454
BcoDI	GTCTC	2 cut(s)	54, 443
BfaI	CTAG	1 cut(s)	761
BfmI	CTRYAG	1 cut(s)	535
BfuAI	ACCTGC	1 cut(s)	73
BfuI	GTATCC	1 cut(s)	812
BisI	GCNGC	3 cut(s)	535, 538, 545
BlpI	GCTNAGC	1 cut(s)	667
BlsI	GCNGC	3 cut(s)	536, 539, 546
Bme1390I	CCNGG	1 cut(s)	454
BmeT110I	CYCGRG	1 cut(s)	650
BmgT120I	GGNCC	1 cut(s)	225
BmiI	GGNNCC	2 cut(s)	226, 1029
BmrFI	CCNGG	1 cut(s)	454
BmsI	GCATC	2 cut(s)	292, 685
BpiI	GAAGAC	1 cut(s)	138
BpmI	CTGGAG	3 cut(s)	762, 914, 1026
Bpu10I	CCTNAGC	1 cut(s)	444
Bpu1102I	GCTNAGC	1 cut(s)	667
BpuMI	CCSGG	1 cut(s)	454
BsaI	GGTCTC	1 cut(s)	443
BsaJI	CCNNGG	1 cut(s)	788
BsaWI	WCCGGW	1 cut(s)	873
Bsc4I	CCNNNNNNNGG	4 cut(s)	222, 388, 636, 891
BseDI	CCNNGG	1 cut(s)	788
BseGI	GGATG	1 cut(s)	140
BseLI	CCNNNNNNNGG	4 cut(s)	222, 388, 636, 891
BseMII	CTCAG	2 cut(s)	681, 788
BseRI	GAGGAG	1 cut(s)	419
BseXI	GCAGC	3 cut(s)	521, 549, 556
BsgI	GTGCAG	2 cut(s)	546, 974
BshFI	GGCC	2 cut(s)	227, 747
BsiHKCI	CYCGRG	1 cut(s)	650
BsiSI	CCGG	2 cut(s)	453, 874
BslI	CCNNNNNNNGG	4 cut(s)	222, 388, 636, 891
BsmAI	GTCTC	2 cut(s)	54, 443
BsnI	GGCC	2 cut(s)	227, 747
Bso31I	GGTCTC	1 cut(s)	443
BsoBI	CYCGRG	1 cut(s)	650
Bsp143I	GATC	3 cut(s)	55, 205, 567
Bsp1720I	GCTNAGC	1 cut(s)	667
BspANI	GGCC	2 cut(s)	227, 747
BspCNI	CTCAG	2 cut(s)	680, 789
BspLI	GGNNCC	2 cut(s)	226, 1029
BspMAI	CTGCAG	1 cut(s)	539
BspMI	ACCTGC	1 cut(s)	73
BspPI	GGATC	1 cut(s)	63
BspTNI	GGTCTC	1 cut(s)	443
BssECI	CCNNGG	1 cut(s)	788
BssMI	GATC	3 cut(s)	55, 205, 567
BssSI	CACGAG	1 cut(s)	555
BssT1I	CCWWGG	1 cut(s)	788
Bst2BI	CACGAG	1 cut(s)	555
Bst4CI	ACNGT	4 cut(s)	698, 755, 1027, 1060
Bst6I	CTCTTC	1 cut(s)	631
BstC8I	GCNNGC	5 cut(s)	518, 542, 576, 647, 822
BstDEI	CTNAG	7 cut(s)	78, 295, 444, 521, 633, 667, 797
BstENI	CCTNNNNNAGG	1 cut(s)	634
BstF5I	GGATG	1 cut(s)	140
BstHHI	GCGC	1 cut(s)	516
BstKTI	GATC	3 cut(s)	58, 208, 570
BstMAI	GTCTC	2 cut(s)	54, 443
BstMBI	GATC	3 cut(s)	55, 205, 567
BstMWI	GCNNNNNNNGC	2 cut(s)	432, 830
BstNSI	RCATGY	2 cut(s)	544, 645
BstSCI	CCNGG	1 cut(s)	452
BstSFI	CTRYAG	1 cut(s)	535
BstV1I	GCAGC	3 cut(s)	521, 549, 556
BstV2I	GAAGAC	1 cut(s)	138
BstX2I	RGATCY	1 cut(s)	55
BstYI	RGATCY	1 cut(s)	55
BsuI	GTATCC	1 cut(s)	812
BsuRI	GGCC	2 cut(s)	227, 747
BtsCI	GGATG	1 cut(s)	140
BtsIMutI	CAGTG	5 cut(s)	226, 326, 681, 703, 1056
BveI	ACCTGC	1 cut(s)	73
Cac8I	GCNNGC	5 cut(s)	518, 542, 576, 647, 822
CfoI	GCGC	1 cut(s)	516
Cfr13I	GGNCC	1 cut(s)	225
Csp6I	GTAC	1 cut(s)	67
CviAII	CATG	4 cut(s)	118, 541, 642, 749
CviQI	GTAC	1 cut(s)	67
DdeI	CTNAG	7 cut(s)	78, 295, 444, 521, 633, 667, 797
DpnI	GATC	3 cut(s)	57, 207, 569
DpnII	GATC	3 cut(s)	55, 205, 567
DraI	TTTAAA	1 cut(s)	469
Eam1104I	CTCTTC	1 cut(s)	631
EarI	CTCTTC	1 cut(s)	631
Eco130I	CCWWGG	1 cut(s)	788
Eco31I	GGTCTC	1 cut(s)	443
Eco57I	CTGAAG	1 cut(s)	705
Eco88I	CYCGRG	1 cut(s)	650
EcoNI	CCTNNNNNAGG	1 cut(s)	634
EcoO109I	RGGNCCY	1 cut(s)	225
EcoRI	GAATTC	3 cut(s)	461, 701, 847
EcoT14I	CCWWGG	1 cut(s)	788
ErhI	CCWWGG	1 cut(s)	788
FaeI	CATG	4 cut(s)	121, 544, 645, 752
FatI	CATG	4 cut(s)	117, 540, 641, 748
FbaI	TGATCA	1 cut(s)	567
FblI	GTMKAC	1 cut(s)	504
Fnu4HI	GCNGC	3 cut(s)	535, 538, 545
FokI	GGATG	1 cut(s)	127
Fsp4HI	GCNGC	3 cut(s)	535, 538, 545
FspBI	CTAG	1 cut(s)	761
GlaI	GCGC	1 cut(s)	515
GluI	GCNGC	3 cut(s)	535, 538, 545
GsuI	CTGGAG	3 cut(s)	762, 914, 1026
HaeIII	GGCC	2 cut(s)	227, 747
HapII	CCGG	2 cut(s)	453, 874
HhaI	GCGC	1 cut(s)	516
Hin1II	CATG	4 cut(s)	121, 544, 645, 752
Hin6I	GCGC	1 cut(s)	514
HinP1I	GCGC	1 cut(s)	514
HincII	GTYRAC	1 cut(s)	1023
HindII	GTYRAC	1 cut(s)	1023
HindIII	AAGCTT	2 cut(s)	292, 572
HinfI	GANTC	3 cut(s)	591, 727, 1046
HpaI	GTTAAC	1 cut(s)	1023
HpaII	CCGG	2 cut(s)	453, 874
HphI	GGTGA	3 cut(s)	403, 934, 958
Hpy166II	GTNNAC	3 cut(s)	411, 505, 1023
Hpy188I	TCNGA	1 cut(s)	358
Hpy8I	GTNNAC	3 cut(s)	411, 505, 1023
HpyAV	CCTTC	3 cut(s)	316, 425, 943
HpyCH4III	ACNGT	4 cut(s)	698, 755, 1027, 1060
HpyCH4IV	ACGT	1 cut(s)	111
HpyCH4V	TGCA	7 cut(s)	241, 527, 537, 544, 578, 917, 955
HpyF10VI	GCNNNNNNNGC	2 cut(s)	432, 830
HpyF3I	CTNAG	7 cut(s)	78, 295, 444, 521, 633, 667, 797
HpySE526I	ACGT	1 cut(s)	111
Hsp92II	CATG	4 cut(s)	121, 544, 645, 752
HspAI	GCGC	1 cut(s)	514
Ksp22I	TGATCA	1 cut(s)	567
KspAI	GTTAAC	1 cut(s)	1023
Kzo9I	GATC	3 cut(s)	55, 205, 567
LmnI	GCTCC	1 cut(s)	1021
Lsp1109I	GCAGC	3 cut(s)	521, 549, 556
LweI	GCATC	2 cut(s)	292, 685
MaeI	CTAG	1 cut(s)	761
MaeII	ACGT	1 cut(s)	111
MaeIII	GTNAC	6 cut(s)	19, 85, 876, 894, 994, 1036
MalI	GATC	3 cut(s)	57, 207, 569
MboI	GATC	3 cut(s)	55, 205, 567
MboII	GAAGA	6 cut(s)	50, 143, 263, 586, 618, 730
MflI	RGATCY	1 cut(s)	55
MluCI	AATT	9 cut(s)	278, 334, 352, 461, 470, 607, 701, 776, 847
MlyI	GAGTC	1 cut(s)	736
MmeI	TCCRAC	2 cut(s)	168, 363
MroXI	GAANNNNTTC	2 cut(s)	461, 620
MseI	TTAA	5 cut(s)	33, 261, 350, 468, 1022
MspA1I	CMGCKG	2 cut(s)	534, 833
MspI	CCGG	2 cut(s)	453, 874
MspR9I	CCNGG	1 cut(s)	454
MwoI	GCNNNNNNNGC	2 cut(s)	432, 830
NciI	CCSGG	1 cut(s)	454
NdeII	GATC	3 cut(s)	55, 205, 567
NlaIII	CATG	4 cut(s)	121, 544, 645, 752
NlaIV	GGNNCC	2 cut(s)	226, 1029
NmuCI	GTSAC	4 cut(s)	19, 85, 876, 894
NspI	RCATGY	2 cut(s)	544, 645
PaeI	GCATGC	1 cut(s)	544
PdmI	GAANNNNTTC	2 cut(s)	461, 620
PfeI	GAWTC	2 cut(s)	591, 1046
PflMI	CCANNNNNTGG	1 cut(s)	891
PkrI	GCNGC	3 cut(s)	536, 539, 546
PleI	GAGTC	1 cut(s)	735
PpsI	GAGTC	1 cut(s)	735
PspN4I	GGNNCC	2 cut(s)	226, 1029
PspPI	GGNCC	1 cut(s)	225
PstI	CTGCAG	1 cut(s)	539
PsuI	RGATCY	1 cut(s)	55
PvuII	CAGCTG	2 cut(s)	534, 833
RsaI	GTAC	1 cut(s)	68
RsaNI	GTAC	1 cut(s)	67
SaqAI	TTAA	5 cut(s)	33, 261, 350, 468, 1022
SatI	GCNGC	3 cut(s)	535, 538, 545
Sau3AI	GATC	3 cut(s)	55, 205, 567
Sau96I	GGNCC	1 cut(s)	225
SchI	GAGTC	1 cut(s)	736
ScrFI	CCNGG	1 cut(s)	454
SfaNI	GCATC	2 cut(s)	292, 685
SfcI	CTRYAG	1 cut(s)	535
SphI	GCATGC	1 cut(s)	544
Sse9I	AATT	9 cut(s)	278, 334, 352, 461, 470, 607, 701, 776, 847
SspMI	CTAG	1 cut(s)	761
StyD4I	CCNGG	1 cut(s)	452
StyI	CCWWGG	1 cut(s)	788
TaaI	ACNGT	4 cut(s)	698, 755, 1027, 1060
TaiI	ACGT	1 cut(s)	114
TaqI	TCGA	1 cut(s)	922
TasI	AATT	9 cut(s)	278, 334, 352, 461, 470, 607, 701, 776, 847
TfiI	GAWTC	2 cut(s)	591, 1046
Tru1I	TTAA	5 cut(s)	33, 261, 350, 468, 1022
Tru9I	TTAA	5 cut(s)	33, 261, 350, 468, 1022
TscAI	CASTG	5 cut(s)	226, 333, 688, 703, 1063
TseFI	GTSAC	4 cut(s)	19, 85, 876, 894
TseI	GCWGC	3 cut(s)	534, 537, 544
Tsp45I	GTSAC	4 cut(s)	19, 85, 876, 894
TspDTI	ATGAA	5 cut(s)	18, 186, 191, 474, 1001
TspGWI	ACGGA	2 cut(s)	162, 1008
TspRI	CASTG	5 cut(s)	226, 333, 688, 703, 1063
Van91I	CCANNNNNTGG	1 cut(s)	891
XagI	CCTNNNNNAGG	1 cut(s)	634
XapI	RAATTY	6 cut(s)	334, 352, 461, 607, 701, 847
XceI	RCATGY	2 cut(s)	544, 645
XmiI	GTMKAC	1 cut(s)	504
XmnI	GAANNNNTTC	2 cut(s)	461, 620
XspI	CTAG	1 cut(s)	761

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.