pyrophosphate-energized membrane proton pump
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT1G16780 AT1G16780 AT1G16780 AT1G78920 AT1G78920 AT1G78920 |
| fragaria_vesca | FvH4_6g36660 FvH4_6g36660 |
| malus_domestica | MD09G1167000.v1.1 MD17G1161300.v1.1 |
| prunus_persica | Prupe.3G024800_v2.0.a1 Prupe.3G024800_v2.0.a1 Prupe.3G024800_v2.0.a1 Prupe.3G024800_v2.0.a1 Prupe.3G024800_v2.0.a1 |
| pyrus_communis | pycom09g08460 pycom17g15400 |
| rosa_chinensis | RchiOBHm_Chr2g0149161 |
| rosa_laevigata | RLG00000020371 |
| rosa_multiflora | Rmu_sc0002345.1_g000007 |
| rosa_roxburghii | Rroxscaffold_2G00098440 |
| rosa_rugosa | Rorug02G0409300 Rorug02G0409400 |
| rosa_samantha | Rh2AG469100 Rh2BG481600 Rh2CG455100 Rh2DG490500 |
| rosa_wichuraiana | Rw2G038190 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc16I | TGCGCA | 1 cut(s) | 934 |
| Acc36I | ACCTGC | 1 cut(s) | 444 |
| AccB1I | GGYRCC | 2 cut(s) | 2057, 2219 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 1532 |
| AccI | GTMKAC | 1 cut(s) | 1220 |
| AccIII | TCCGGA | 2 cut(s) | 289, 2100 |
| AciI | CCGC | 2 cut(s) | 389, 465 |
| AclI | AACGTT | 2 cut(s) | 555, 1015 |
| AclWI | GGATC | 5 cut(s) | 1025, 1145, 1158, 1747, 2111 |
| AcoI | YGGCCR | 1 cut(s) | 1912 |
| AcsI | RAATTY | 3 cut(s) | 108, 864, 1521 |
| AcuI | CTGAAG | 3 cut(s) | 325, 351, 891 |
| AcvI | CACGTG | 1 cut(s) | 1121 |
| AcyI | GRCGYC | 1 cut(s) | 2058 |
| AfaI | GTAC | 6 cut(s) | 251, 421, 1117, 1359, 1576, 2243 |
| AfiI | CCNNNNNNNGG | 5 cut(s) | 296, 354, 1281, 1532, 2135 |
| AflIII | ACRYGT | 1 cut(s) | 1118 |
| AgsI | TTSAA | 4 cut(s) | 720, 1028, 1816, 2326 |
| AjnI | CCWGG | 4 cut(s) | 712, 2053, 2061, 2222 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 1833, 1865 |
| Alw21I | GWGCWC | 2 cut(s) | 509, 1382 |
| Alw26I | GTCTC | 2 cut(s) | 568, 2243 |
| AlwI | GGATC | 5 cut(s) | 1025, 1145, 1158, 1747, 2111 |
| AlwNI | CAGNNNCTG | 2 cut(s) | 515, 2180 |
| Aor13HI | TCCGGA | 2 cut(s) | 289, 2100 |
| AoxI | GGCC | 7 cut(s) | 38, 53, 1489, 1501, 1896, 1912, 1964 |
| ApoI | RAATTY | 3 cut(s) | 108, 864, 1521 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 1138 |
| AspA2I | CCTAGG | 1 cut(s) | 881 |
| AspLEI | GCGC | 2 cut(s) | 935, 2060 |
| AspS9I | GGNCC | 9 cut(s) | 38, 284, 345, 357, 1489, 1610, 1896, 1965, 2339 |
| AsuC2I | CCSGG | 2 cut(s) | 1670, 1968 |
| AsuHPI | GGTGA | 4 cut(s) | 1093, 1669, 2067, 2327 |
| AsuII | TTCGAA | 1 cut(s) | 106 |
| AvaII | GGWCC | 5 cut(s) | 284, 345, 357, 1610, 2339 |
| AvrII | CCTAGG | 1 cut(s) | 881 |
| BamHI | GGATCC | 1 cut(s) | 1150 |
| BanI | GGYRCC | 2 cut(s) | 2057, 2219 |
| BanII | GRGCYC | 2 cut(s) | 1356, 1382 |
| BauI | CACGAG | 2 cut(s) | 939, 1803 |
| BbrPI | CACGTG | 1 cut(s) | 1121 |
| BbsI | GAAGAC | 2 cut(s) | 205, 2392 |
| Bbv12I | GWGCWC | 2 cut(s) | 509, 1382 |
| BccI | CCATC | 8 cut(s) | 20, 255, 317, 364, 368, 677, 1042, 1221 |
| BceAI | ACGGC | 1 cut(s) | 1317 |
| BciT130I | CCWGG | 4 cut(s) | 714, 2055, 2063, 2224 |
| BcnI | CCSGG | 2 cut(s) | 1670, 1968 |
| BcoDI | GTCTC | 2 cut(s) | 568, 2243 |
| BfaI | CTAG | 4 cut(s) | 258, 383, 567, 882 |
| BfmI | CTRYAG | 4 cut(s) | 891, 1166, 1551, 2079 |
| BfoI | RGCGCY | 1 cut(s) | 2061 |
| BfuAI | ACCTGC | 1 cut(s) | 444 |
| BglII | AGATCT | 2 cut(s) | 838, 904 |
| BlnI | CCTAGG | 1 cut(s) | 881 |
| BmcAI | AGTACT | 1 cut(s) | 1576 |
| Bme1390I | CCNGG | 6 cut(s) | 714, 1670, 1968, 2055, 2063, 2224 |
| Bme18I | GGWCC | 5 cut(s) | 284, 345, 357, 1610, 2339 |
| BmgT120I | GGNCC | 9 cut(s) | 38, 284, 345, 357, 1489, 1610, 1896, 1965, 2339 |
| BmiI | GGNNCC | 8 cut(s) | 39, 285, 347, 358, 1152, 2059, 2221, 2394 |
| BmrFI | CCNGG | 6 cut(s) | 714, 1670, 1968, 2055, 2063, 2224 |
| BmrI | ACTGGG | 2 cut(s) | 343, 2130 |
| BmsI | GCATC | 9 cut(s) | 105, 301, 449, 779, 1681, 1763, 2033, 2039, 2355 |
| BmuI | ACTGGG | 2 cut(s) | 343, 2130 |
| BpiI | GAAGAC | 2 cut(s) | 205, 2392 |
| BpmI | CTGGAG | 1 cut(s) | 1431 |
| Bpu10I | CCTNAGC | 2 cut(s) | 429, 508 |
| Bpu14I | TTCGAA | 1 cut(s) | 106 |
| BpuEI | CTTGAG | 1 cut(s) | 1908 |
| BpuMI | CCSGG | 2 cut(s) | 1670, 1968 |
| BsaAI | YACGTR | 2 cut(s) | 320, 1121 |
| BsaHI | GRCGYC | 1 cut(s) | 2058 |
| BsaJI | CCNNGG | 4 cut(s) | 56, 881, 2061, 2223 |
| BsaWI | WCCGGW | 2 cut(s) | 289, 2100 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 906, 936, 2295, 2325 |
| Bsc4I | CCNNNNNNNGG | 5 cut(s) | 296, 354, 1281, 1532, 2135 |
| Bse118I | RCCGGY | 1 cut(s) | 2213 |
| Bse1I | ACTGG | 3 cut(s) | 349, 1534, 2125 |
| Bse3DI | GCAATG | 1 cut(s) | 596 |
| BseAI | TCCGGA | 2 cut(s) | 289, 2100 |
| BseBI | CCWGG | 4 cut(s) | 714, 2055, 2063, 2224 |
| BseDI | CCNNGG | 4 cut(s) | 56, 881, 2061, 2223 |
| BseGI | GGATG | 5 cut(s) | 16, 31, 537, 669, 1789 |
| BseLI | CCNNNNNNNGG | 5 cut(s) | 296, 354, 1281, 1532, 2135 |
| BseMI | GCAATG | 1 cut(s) | 596 |
| BseMII | CTCAG | 5 cut(s) | 420, 522, 806, 1488, 1585 |
| BseNI | ACTGG | 3 cut(s) | 349, 1534, 2125 |
| BseYI | CCCAGC | 2 cut(s) | 518, 1486 |
| BsgI | GTGCAG | 1 cut(s) | 1731 |
| BshFI | GGCC | 7 cut(s) | 40, 55, 1491, 1503, 1898, 1914, 1966 |
| BshNI | GGYRCC | 2 cut(s) | 2057, 2219 |
| BsiHKAI | GWGCWC | 2 cut(s) | 509, 1382 |
| BsiSI | CCGG | 5 cut(s) | 290, 1669, 1968, 2101, 2214 |
| BsiWI | CGTACG | 1 cut(s) | 1357 |
| BslFI | GGGAC | 4 cut(s) | 297, 370, 1408, 2240 |
| BslI | CCNNNNNNNGG | 5 cut(s) | 296, 354, 1281, 1532, 2135 |
| BsmAI | GTCTC | 2 cut(s) | 568, 2243 |
| BsmFI | GGGAC | 4 cut(s) | 297, 370, 1408, 2240 |
| BsmI | GAATGC | 1 cut(s) | 1572 |
| BsnI | GGCC | 7 cut(s) | 40, 55, 1491, 1503, 1898, 1914, 1966 |
| Bsp119I | TTCGAA | 1 cut(s) | 106 |
| Bsp1286I | GDGCHC | 3 cut(s) | 509, 1356, 1382 |
| Bsp13I | TCCGGA | 2 cut(s) | 289, 2100 |
| Bsp143I | GATC | 9 cut(s) | 838, 904, 949, 1030, 1075, 1150, 1674, 1739, 2103 |
| BspACI | CCGC | 2 cut(s) | 389, 465 |
| BspANI | GGCC | 7 cut(s) | 40, 55, 1491, 1503, 1898, 1914, 1966 |
| BspCNI | CTCAG | 5 cut(s) | 421, 521, 805, 1487, 1584 |
| BspEI | TCCGGA | 2 cut(s) | 289, 2100 |
| BspLI | GGNNCC | 8 cut(s) | 39, 285, 347, 358, 1152, 2059, 2221, 2394 |
| BspMAI | CTGCAG | 1 cut(s) | 895 |
| BspMI | ACCTGC | 1 cut(s) | 444 |
| BspPI | GGATC | 5 cut(s) | 1025, 1145, 1158, 1747, 2111 |
| BspQI | GCTCTTC | 1 cut(s) | 1446 |
| BspT104I | TTCGAA | 1 cut(s) | 106 |
| BspT107I | GGYRCC | 2 cut(s) | 2057, 2219 |
| BsrDI | GCAATG | 1 cut(s) | 596 |
| BsrFI | RCCGGY | 1 cut(s) | 2213 |
| BsrI | ACTGG | 3 cut(s) | 349, 1534, 2125 |
| BssAI | RCCGGY | 1 cut(s) | 2213 |
| BssECI | CCNNGG | 4 cut(s) | 56, 881, 2061, 2223 |
| BssMI | GATC | 9 cut(s) | 838, 904, 949, 1030, 1075, 1150, 1674, 1739, 2103 |
| BssNI | GRCGYC | 1 cut(s) | 2058 |
| BssSI | CACGAG | 2 cut(s) | 939, 1803 |
| BssT1I | CCWWGG | 2 cut(s) | 56, 881 |
| Bst2BI | CACGAG | 2 cut(s) | 939, 1803 |
| Bst2UI | CCWGG | 4 cut(s) | 714, 2055, 2063, 2224 |
| Bst4CI | ACNGT | 5 cut(s) | 478, 582, 1254, 2176, 2311 |
| Bst6I | CTCTTC | 2 cut(s) | 747, 1446 |
| BstACI | GRCGYC | 1 cut(s) | 2058 |
| BstAPI | GCANNNNNTGC | 2 cut(s) | 899, 1256 |
| BstBAI | YACGTR | 2 cut(s) | 320, 1121 |
| BstBI | TTCGAA | 1 cut(s) | 106 |
| BstC8I | GCNNGC | 3 cut(s) | 187, 1248, 2370 |
| BstDEI | CTNAG | 6 cut(s) | 366, 429, 508, 792, 1474, 1571 |
| BstEII | GGTNACC | 1 cut(s) | 2315 |
| BstF5I | GGATG | 5 cut(s) | 16, 31, 537, 669, 1789 |
| BstH2I | RGCGCY | 1 cut(s) | 2061 |
| BstHHI | GCGC | 2 cut(s) | 935, 2060 |
| BstKTI | GATC | 9 cut(s) | 841, 907, 952, 1033, 1078, 1153, 1677, 1742, 2106 |
| BstMAI | GTCTC | 2 cut(s) | 568, 2243 |
| BstMBI | GATC | 9 cut(s) | 838, 904, 949, 1030, 1075, 1150, 1674, 1739, 2103 |
| BstNI | CCWGG | 4 cut(s) | 714, 2055, 2063, 2224 |
| BstNSI | RCATGY | 2 cut(s) | 76, 1366 |
| BstPI | GGTNACC | 1 cut(s) | 2315 |
| BstSCI | CCNGG | 6 cut(s) | 712, 1668, 1966, 2053, 2061, 2222 |
| BstSFI | CTRYAG | 4 cut(s) | 891, 1166, 1551, 2079 |
| BstV2I | GAAGAC | 2 cut(s) | 205, 2392 |
| BstX2I | RGATCY | 6 cut(s) | 838, 904, 1030, 1150, 1739, 2103 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 1499 |
| BstYI | RGATCY | 6 cut(s) | 838, 904, 1030, 1150, 1739, 2103 |
| BsuRI | GGCC | 7 cut(s) | 40, 55, 1491, 1503, 1898, 1914, 1966 |
| BtsCI | GGATG | 5 cut(s) | 16, 31, 537, 669, 1789 |
| BtsI | GCAGTG | 1 cut(s) | 900 |
| BtsIMutI | CAGTG | 1 cut(s) | 900 |
| BveI | ACCTGC | 1 cut(s) | 444 |
| Cac8I | GCNNGC | 3 cut(s) | 187, 1248, 2370 |
| CaiI | CAGNNNCTG | 2 cut(s) | 515, 2180 |
| CfoI | GCGC | 2 cut(s) | 935, 2060 |
| Cfr10I | RCCGGY | 1 cut(s) | 2213 |
| Cfr13I | GGNCC | 9 cut(s) | 38, 284, 345, 357, 1489, 1610, 1896, 1965, 2339 |
| CseI | GACGC | 1 cut(s) | 1206 |
| Csp6I | GTAC | 6 cut(s) | 250, 420, 1116, 1358, 1575, 2242 |
| CviAII | CATG | 8 cut(s) | 7, 73, 1349, 1363, 1391, 2158, 2191, 2351 |
| CviQI | GTAC | 6 cut(s) | 250, 420, 1116, 1358, 1575, 2242 |
| DdeI | CTNAG | 6 cut(s) | 366, 429, 508, 792, 1474, 1571 |
| DinI | GGCGCC | 1 cut(s) | 2059 |
| DpnI | GATC | 9 cut(s) | 840, 906, 951, 1032, 1077, 1152, 1676, 1741, 2105 |
| DpnII | GATC | 9 cut(s) | 838, 904, 949, 1030, 1075, 1150, 1674, 1739, 2103 |
| DraI | TTTAAA | 1 cut(s) | 2037 |
| EaeI | YGGCCR | 1 cut(s) | 1912 |
| Eam1104I | CTCTTC | 2 cut(s) | 747, 1446 |
| EarI | CTCTTC | 2 cut(s) | 747, 1446 |
| Ecl136II | GAGCTC | 1 cut(s) | 1380 |
| Eco130I | CCWWGG | 2 cut(s) | 56, 881 |
| Eco24I | GRGCYC | 2 cut(s) | 1356, 1382 |
| Eco32I | GATATC | 1 cut(s) | 306 |
| Eco47I | GGWCC | 5 cut(s) | 284, 345, 357, 1610, 2339 |
| Eco53kI | GAGCTC | 1 cut(s) | 1380 |
| Eco57I | CTGAAG | 3 cut(s) | 325, 351, 891 |
| Eco72I | CACGTG | 1 cut(s) | 1121 |
| Eco91I | GGTNACC | 1 cut(s) | 2315 |
| EcoICRI | GAGCTC | 1 cut(s) | 1380 |
| EcoO109I | RGGNCCY | 3 cut(s) | 38, 284, 345 |
| EcoO65I | GGTNACC | 1 cut(s) | 2315 |
| EcoRI | GAATTC | 3 cut(s) | 108, 864, 1521 |
| EcoRII | CCWGG | 4 cut(s) | 712, 2053, 2061, 2222 |
| EcoRV | GATATC | 1 cut(s) | 306 |
| EcoT14I | CCWWGG | 2 cut(s) | 56, 881 |
| EcoT38I | GRGCYC | 2 cut(s) | 1356, 1382 |
| EgeI | GGCGCC | 1 cut(s) | 2059 |
| EheI | GGCGCC | 1 cut(s) | 2059 |
| ErhI | CCWWGG | 2 cut(s) | 56, 881 |
| FaeI | CATG | 8 cut(s) | 10, 76, 1352, 1366, 1394, 2161, 2194, 2354 |
| FaqI | GGGAC | 4 cut(s) | 297, 370, 1408, 2240 |
| FatI | CATG | 8 cut(s) | 6, 72, 1348, 1362, 1390, 2157, 2190, 2350 |
| FblI | GTMKAC | 1 cut(s) | 1220 |
| FokI | GGATG | 5 cut(s) | 23, 38, 544, 656, 1796 |
| FriOI | GRGCYC | 2 cut(s) | 1356, 1382 |
| FspBI | CTAG | 4 cut(s) | 258, 383, 567, 882 |
| FspI | TGCGCA | 1 cut(s) | 934 |
| GlaI | GCGC | 2 cut(s) | 934, 2059 |
| GsaI | CCCAGC | 2 cut(s) | 522, 1490 |
| GsuI | CTGGAG | 1 cut(s) | 1431 |
| HaeII | RGCGCY | 1 cut(s) | 2061 |
| HaeIII | GGCC | 7 cut(s) | 40, 55, 1491, 1503, 1898, 1914, 1966 |
| HapII | CCGG | 5 cut(s) | 290, 1669, 1968, 2101, 2214 |
| HgaI | GACGC | 1 cut(s) | 1206 |
| HhaI | GCGC | 2 cut(s) | 935, 2060 |
| Hin1I | GRCGYC | 1 cut(s) | 2058 |
| Hin1II | CATG | 8 cut(s) | 10, 76, 1352, 1366, 1394, 2161, 2194, 2354 |
| Hin6I | GCGC | 2 cut(s) | 933, 2058 |
| HinP1I | GCGC | 2 cut(s) | 933, 2058 |
| HinfI | GANTC | 9 cut(s) | 424, 561, 707, 762, 886, 1124, 1413, 1430, 1648 |
| HpaII | CCGG | 5 cut(s) | 290, 1669, 1968, 2101, 2214 |
| HphI | GGTGA | 4 cut(s) | 1093, 1669, 2067, 2327 |
| Hpy166II | GTNNAC | 4 cut(s) | 459, 1118, 1221, 1808 |
| Hpy188I | TCNGA | 9 cut(s) | 114, 303, 310, 767, 1147, 1155, 1206, 2264, 2408 |
| Hpy8I | GTNNAC | 4 cut(s) | 459, 1118, 1221, 1808 |
| HpyAV | CCTTC | 4 cut(s) | 326, 718, 1941, 2352 |
| HpyCH4III | ACNGT | 5 cut(s) | 478, 582, 1254, 2176, 2311 |
| HpyCH4IV | ACGT | 5 cut(s) | 177, 319, 555, 1015, 1120 |
| HpyF3I | CTNAG | 6 cut(s) | 366, 429, 508, 792, 1474, 1571 |
| HpySE526I | ACGT | 5 cut(s) | 177, 319, 555, 1015, 1120 |
| Hsp92I | GRCGYC | 1 cut(s) | 2058 |
| Hsp92II | CATG | 8 cut(s) | 10, 76, 1352, 1366, 1394, 2161, 2194, 2354 |
| HspAI | GCGC | 2 cut(s) | 933, 2058 |
| KasI | GGCGCC | 1 cut(s) | 2057 |
| Kpn2I | TCCGGA | 2 cut(s) | 289, 2100 |
| Kzo9I | GATC | 9 cut(s) | 838, 904, 949, 1030, 1075, 1150, 1674, 1739, 2103 |
| LguI | GCTCTTC | 1 cut(s) | 1446 |
| LmnI | GCTCC | 6 cut(s) | 182, 497, 767, 833, 1385, 2398 |
| LweI | GCATC | 9 cut(s) | 105, 301, 449, 779, 1681, 1763, 2033, 2039, 2355 |
| MaeI | CTAG | 4 cut(s) | 258, 383, 567, 882 |
| MaeII | ACGT | 5 cut(s) | 177, 319, 555, 1015, 1120 |
| MaeIII | GTNAC | 4 cut(s) | 727, 1183, 2276, 2315 |
| MalI | GATC | 9 cut(s) | 840, 906, 951, 1032, 1077, 1152, 1676, 1741, 2105 |
| MboI | GATC | 9 cut(s) | 838, 904, 949, 1030, 1075, 1150, 1674, 1739, 2103 |
| MflI | RGATCY | 6 cut(s) | 838, 904, 1030, 1150, 1739, 2103 |
| MhlI | GDGCHC | 3 cut(s) | 509, 1356, 1382 |
| Mly113I | GGCGCC | 1 cut(s) | 2058 |
| MlyI | GAGTC | 4 cut(s) | 418, 570, 1422, 1657 |
| MmeI | TCCRAC | 6 cut(s) | 160, 678, 733, 811, 892, 1550 |
| MroI | TCCGGA | 2 cut(s) | 289, 2100 |
| MroXI | GAANNNNTTC | 1 cut(s) | 1138 |
| MseI | TTAA | 4 cut(s) | 1266, 1935, 2036, 2361 |
| MslI | CAYNNNNRTG | 2 cut(s) | 2162, 2363 |
| MspA1I | CMGCKG | 2 cut(s) | 1550, 2336 |
| MspI | CCGG | 5 cut(s) | 290, 1669, 1968, 2101, 2214 |
| MspR9I | CCNGG | 6 cut(s) | 714, 1670, 1968, 2055, 2063, 2224 |
| Mva1269I | GAATGC | 1 cut(s) | 1572 |
| MvaI | CCWGG | 4 cut(s) | 714, 2055, 2063, 2224 |
| NarI | GGCGCC | 1 cut(s) | 2058 |
| NciI | CCSGG | 2 cut(s) | 1670, 1968 |
| NdeII | GATC | 9 cut(s) | 838, 904, 949, 1030, 1075, 1150, 1674, 1739, 2103 |
| NlaIII | CATG | 8 cut(s) | 10, 76, 1352, 1366, 1394, 2161, 2194, 2354 |
| NlaIV | GGNNCC | 8 cut(s) | 39, 285, 347, 358, 1152, 2059, 2221, 2394 |
| NmuCI | GTSAC | 2 cut(s) | 2276, 2315 |
| NsbI | TGCGCA | 1 cut(s) | 934 |
| NspI | RCATGY | 2 cut(s) | 76, 1366 |
| NspV | TTCGAA | 1 cut(s) | 106 |
| PciSI | GCTCTTC | 1 cut(s) | 1446 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 1151 |
| PctI | GAATGC | 1 cut(s) | 1572 |
| PdmI | GAANNNNTTC | 1 cut(s) | 1138 |
| PfeI | GAWTC | 5 cut(s) | 707, 762, 886, 1124, 1430 |
| Pfl23II | CGTACG | 1 cut(s) | 1357 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 1532 |
| PfoI | TCCNGGA | 1 cut(s) | 1668 |
| PleI | GAGTC | 4 cut(s) | 418, 569, 1421, 1656 |
| PluTI | GGCGCC | 1 cut(s) | 2061 |
| PmaCI | CACGTG | 1 cut(s) | 1121 |
| PmlI | CACGTG | 1 cut(s) | 1121 |
| PpsI | GAGTC | 4 cut(s) | 418, 569, 1421, 1656 |
| Ppu21I | YACGTR | 2 cut(s) | 320, 1121 |
| PpuMI | RGGWCCY | 2 cut(s) | 284, 345 |
| Psp124BI | GAGCTC | 1 cut(s) | 1382 |
| Psp1406I | AACGTT | 2 cut(s) | 555, 1015 |
| Psp5II | RGGWCCY | 2 cut(s) | 284, 345 |
| Psp6I | CCWGG | 4 cut(s) | 712, 2053, 2061, 2222 |
| PspCI | CACGTG | 1 cut(s) | 1121 |
| PspEI | GGTNACC | 1 cut(s) | 2315 |
| PspFI | CCCAGC | 2 cut(s) | 518, 1486 |
| PspGI | CCWGG | 4 cut(s) | 712, 2053, 2061, 2222 |
| PspLI | CGTACG | 1 cut(s) | 1357 |
| PspN4I | GGNNCC | 8 cut(s) | 39, 285, 347, 358, 1152, 2059, 2221, 2394 |
| PspPI | GGNCC | 9 cut(s) | 38, 284, 345, 357, 1489, 1610, 1896, 1965, 2339 |
| PspPPI | RGGWCCY | 2 cut(s) | 284, 345 |
| PstI | CTGCAG | 1 cut(s) | 895 |
| PstNI | CAGNNNCTG | 2 cut(s) | 515, 2180 |
| PsuI | RGATCY | 6 cut(s) | 838, 904, 1030, 1150, 1739, 2103 |
| PvuII | CAGCTG | 2 cut(s) | 1550, 2336 |
| RsaI | GTAC | 6 cut(s) | 251, 421, 1117, 1359, 1576, 2243 |
| RsaNI | GTAC | 6 cut(s) | 250, 420, 1116, 1358, 1575, 2242 |
| RseI | CAYNNNNRTG | 2 cut(s) | 2162, 2363 |
| SacI | GAGCTC | 1 cut(s) | 1382 |
| SapI | GCTCTTC | 1 cut(s) | 1446 |
| SaqAI | TTAA | 4 cut(s) | 1266, 1935, 2036, 2361 |
| Sau3AI | GATC | 9 cut(s) | 838, 904, 949, 1030, 1075, 1150, 1674, 1739, 2103 |
| Sau96I | GGNCC | 9 cut(s) | 38, 284, 345, 357, 1489, 1610, 1896, 1965, 2339 |
| ScaI | AGTACT | 1 cut(s) | 1576 |
| SchI | GAGTC | 4 cut(s) | 418, 570, 1422, 1657 |
| ScrFI | CCNGG | 6 cut(s) | 714, 1670, 1968, 2055, 2063, 2224 |
| SduI | GDGCHC | 3 cut(s) | 509, 1356, 1382 |
| SfaNI | GCATC | 9 cut(s) | 105, 301, 449, 779, 1681, 1763, 2033, 2039, 2355 |
| SfcI | CTRYAG | 4 cut(s) | 891, 1166, 1551, 2079 |
| SfoI | GGCGCC | 1 cut(s) | 2059 |
| SfuI | TTCGAA | 1 cut(s) | 106 |
| SinI | GGWCC | 5 cut(s) | 284, 345, 357, 1610, 2339 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 2162, 2363 |
| SmlI | CTYRAG | 1 cut(s) | 1923 |
| SmoI | CTYRAG | 1 cut(s) | 1923 |
| SsiI | CCGC | 2 cut(s) | 389, 465 |
| SspDI | GGCGCC | 1 cut(s) | 2057 |
| SspI | AATATT | 1 cut(s) | 1101 |
| SspMI | CTAG | 4 cut(s) | 258, 383, 567, 882 |
| SstI | GAGCTC | 1 cut(s) | 1382 |
| StyD4I | CCNGG | 6 cut(s) | 712, 1668, 1966, 2053, 2061, 2222 |
| StyI | CCWWGG | 2 cut(s) | 56, 881 |
| TaaI | ACNGT | 5 cut(s) | 478, 582, 1254, 2176, 2311 |
| TaiI | ACGT | 5 cut(s) | 180, 322, 558, 1018, 1123 |
| TaqI | TCGA | 4 cut(s) | 15, 106, 559, 1376 |
| TatI | WGTACW | 2 cut(s) | 1574, 2241 |
| TfiI | GAWTC | 5 cut(s) | 707, 762, 886, 1124, 1430 |
| Tru1I | TTAA | 4 cut(s) | 1266, 1935, 2036, 2361 |
| Tru9I | TTAA | 4 cut(s) | 1266, 1935, 2036, 2361 |
| TscAI | CASTG | 1 cut(s) | 900 |
| TseFI | GTSAC | 2 cut(s) | 2276, 2315 |
| Tsp45I | GTSAC | 2 cut(s) | 2276, 2315 |
| TspDTI | ATGAA | 4 cut(s) | 737, 1033, 1077, 2339 |
| TspGWI | ACGGA | 2 cut(s) | 119, 2000 |
| TspRI | CASTG | 1 cut(s) | 900 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 1532 |
| VpaK11BI | GGWCC | 5 cut(s) | 284, 345, 357, 1610, 2339 |
| XapI | RAATTY | 3 cut(s) | 108, 864, 1521 |
| XceI | RCATGY | 2 cut(s) | 76, 1366 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 367 |
| XmaJI | CCTAGG | 1 cut(s) | 881 |
| XmiI | GTMKAC | 1 cut(s) | 1220 |
| XmnI | GAANNNNTTC | 1 cut(s) | 1138 |
| XspI | CTAG | 4 cut(s) | 258, 383, 567, 882 |
| ZrmI | AGTACT | 1 cut(s) | 1576 |