U-box domain-containing protein
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT1G16760 AT1G16760 AT1G78940 AT1G78940 AT1G78940 AT3G20200 AT3G20200 AT3G20200 AT3G20200 |
| fragaria_vesca | FvH4_6g36560 |
| malus_domestica | MD09G1167400.v1.1 MD17G1161000.v1.1 |
| prunus_persica | Prupe.3G025400_v2.0.a1 Prupe.3G025400_v2.0.a1 |
| rosa_chinensis | RchiOBHm_Chr2g0149031 |
| rosa_laevigata | RLG00000020364 |
| rosa_multiflora | Rmu_sc0007360.1_g000003 |
| rosa_roxburghii | Rroxscaffold_2G00098520 |
| rosa_rugosa | Rorug02G0408600 Rorug02G0408700 |
| rosa_samantha | Rh2BG480900 Rh2CG454400 Rh2DG489700 |
| rosa_wichuraiana | Rw2G038130 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 1 cut(s) | 2075 |
| AccB1I | GGYRCC | 2 cut(s) | 490, 2168 |
| AccB7I | CCANNNNNTGG | 2 cut(s) | 1598, 2165 |
| AccI | GTMKAC | 2 cut(s) | 1959, 2028 |
| AccII | CGCG | 2 cut(s) | 319, 920 |
| AccIII | TCCGGA | 1 cut(s) | 1495 |
| AciI | CCGC | 1 cut(s) | 920 |
| AclWI | GGATC | 3 cut(s) | 294, 1907, 2297 |
| AcoI | YGGCCR | 3 cut(s) | 1623, 1833, 2087 |
| AcuI | CTGAAG | 2 cut(s) | 1064, 2232 |
| AfaI | GTAC | 6 cut(s) | 316, 348, 1064, 1069, 1572, 2178 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 1598, 2165 |
| AflII | CTTAAG | 1 cut(s) | 2104 |
| AflIII | ACRYGT | 3 cut(s) | 169, 317, 1059 |
| AgsI | TTSAA | 5 cut(s) | 192, 353, 454, 679, 2042 |
| AhlI | ACTAGT | 1 cut(s) | 580 |
| AjnI | CCWGG | 2 cut(s) | 143, 999 |
| Alw21I | GWGCWC | 2 cut(s) | 427, 1764 |
| Alw26I | GTCTC | 2 cut(s) | 1021, 1652 |
| Alw44I | GTGCAC | 1 cut(s) | 1760 |
| AlwI | GGATC | 3 cut(s) | 294, 1907, 2297 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 1000 |
| Aor13HI | TCCGGA | 1 cut(s) | 1495 |
| AoxI | GGCC | 9 cut(s) | 148, 1293, 1623, 1720, 1833, 2034, 2087, 2156, 2381 |
| ApaLI | GTGCAC | 1 cut(s) | 1760 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 872, 904 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 550 |
| AspS9I | GGNCC | 7 cut(s) | 148, 908, 922, 1294, 1439, 2068, 2381 |
| AsuC2I | CCSGG | 1 cut(s) | 1779 |
| AsuHPI | GGTGA | 2 cut(s) | 133, 2012 |
| AsuNHI | GCTAGC | 1 cut(s) | 2119 |
| AvaII | GGWCC | 4 cut(s) | 908, 922, 1439, 2068 |
| AxyI | CCTNAGG | 1 cut(s) | 1966 |
| BaeGI | GKGCMC | 2 cut(s) | 493, 1764 |
| BalI | TGGCCA | 3 cut(s) | 1625, 1835, 2089 |
| BanI | GGYRCC | 2 cut(s) | 490, 2168 |
| BanII | GRGCYC | 1 cut(s) | 427 |
| BauI | CACGAG | 1 cut(s) | 555 |
| BbsI | GAAGAC | 1 cut(s) | 360 |
| Bbv12I | GWGCWC | 2 cut(s) | 427, 1764 |
| BccI | CCATC | 5 cut(s) | 114, 250, 1417, 2002, 2191 |
| BceAI | ACGGC | 2 cut(s) | 2257, 2324 |
| BciT130I | CCWGG | 2 cut(s) | 145, 1001 |
| BciVI | GTATCC | 1 cut(s) | 841 |
| BclI | TGATCA | 2 cut(s) | 1462, 2281 |
| BcnI | CCSGG | 1 cut(s) | 1779 |
| BcoDI | GTCTC | 2 cut(s) | 1021, 1652 |
| BcuI | ACTAGT | 1 cut(s) | 580 |
| BfmI | CTRYAG | 2 cut(s) | 156, 1851 |
| BfrI | CTTAAG | 1 cut(s) | 2104 |
| BfuI | GTATCC | 1 cut(s) | 841 |
| BglII | AGATCT | 2 cut(s) | 531, 2161 |
| Bme1390I | CCNGG | 3 cut(s) | 145, 1001, 1779 |
| Bme18I | GGWCC | 4 cut(s) | 908, 922, 1439, 2068 |
| BmgT120I | GGNCC | 7 cut(s) | 148, 908, 922, 1294, 1439, 2068, 2381 |
| BmiI | GGNNCC | 8 cut(s) | 104, 149, 492, 1585, 1694, 2070, 2170, 2326 |
| BmrFI | CCNGG | 3 cut(s) | 145, 1001, 1779 |
| BmrI | ACTGGG | 1 cut(s) | 1172 |
| BmsI | GCATC | 4 cut(s) | 910, 1225, 1489, 2052 |
| BmtI | GCTAGC | 1 cut(s) | 2123 |
| BmuI | ACTGGG | 1 cut(s) | 1172 |
| BpiI | GAAGAC | 1 cut(s) | 360 |
| BpmI | CTGGAG | 1 cut(s) | 411 |
| BpuEI | CTTGAG | 3 cut(s) | 290, 1491, 1757 |
| BpuMI | CCSGG | 1 cut(s) | 1779 |
| BsaJI | CCNNGG | 7 cut(s) | 144, 282, 537, 856, 1221, 2172, 2306 |
| BsaWI | WCCGGW | 1 cut(s) | 1495 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 736, 766 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 1598, 2165 |
| Bse1I | ACTGG | 4 cut(s) | 1167, 1472, 2090, 2090 |
| Bse21I | CCTNAGG | 1 cut(s) | 1966 |
| Bse3DI | GCAATG | 1 cut(s) | 304 |
| BseAI | TCCGGA | 1 cut(s) | 1495 |
| BseBI | CCWGG | 2 cut(s) | 145, 1001 |
| BseDI | CCNNGG | 7 cut(s) | 144, 282, 537, 856, 1221, 2172, 2306 |
| BseGI | GGATG | 2 cut(s) | 1504, 1558 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 1598, 2165 |
| BseMI | GCAATG | 1 cut(s) | 304 |
| BseNI | ACTGG | 4 cut(s) | 1167, 1472, 2090, 2090 |
| BseSI | GKGCMC | 2 cut(s) | 493, 1764 |
| BseYI | CCCAGC | 2 cut(s) | 1846, 2071 |
| BsgI | GTGCAG | 5 cut(s) | 487, 579, 1100, 1231, 2154 |
| Bsh1236I | CGCG | 2 cut(s) | 319, 920 |
| BshFI | GGCC | 9 cut(s) | 150, 1295, 1625, 1722, 1835, 2036, 2089, 2158, 2383 |
| BshNI | GGYRCC | 2 cut(s) | 490, 2168 |
| BsiHKAI | GWGCWC | 2 cut(s) | 427, 1764 |
| BsiSI | CCGG | 2 cut(s) | 1496, 1779 |
| BslFI | GGGAC | 3 cut(s) | 40, 1829, 2063 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 1598, 2165 |
| BsmAI | GTCTC | 2 cut(s) | 1021, 1652 |
| BsmFI | GGGAC | 3 cut(s) | 40, 1829, 2063 |
| BsmI | GAATGC | 2 cut(s) | 1551, 1941 |
| BsnI | GGCC | 9 cut(s) | 150, 1295, 1625, 1722, 1835, 2036, 2089, 2158, 2383 |
| Bsp1286I | GDGCHC | 3 cut(s) | 427, 493, 1764 |
| Bsp13I | TCCGGA | 1 cut(s) | 1495 |
| Bsp1407I | TGTACA | 1 cut(s) | 1062 |
| Bsp143I | GATC | 9 cut(s) | 286, 531, 1462, 1795, 1912, 2000, 2161, 2281, 2302 |
| Bsp19I | CCATGG | 1 cut(s) | 1221 |
| BspACI | CCGC | 1 cut(s) | 920 |
| BspANI | GGCC | 9 cut(s) | 150, 1295, 1625, 1722, 1835, 2036, 2089, 2158, 2383 |
| BspEI | TCCGGA | 1 cut(s) | 1495 |
| BspFNI | CGCG | 2 cut(s) | 319, 920 |
| BspHI | TCATGA | 1 cut(s) | 1878 |
| BspLI | GGNNCC | 8 cut(s) | 104, 149, 492, 1585, 1694, 2070, 2170, 2326 |
| BspOI | GCTAGC | 1 cut(s) | 2123 |
| BspPI | GGATC | 3 cut(s) | 294, 1907, 2297 |
| BspT107I | GGYRCC | 2 cut(s) | 490, 2168 |
| BspTI | CTTAAG | 1 cut(s) | 2104 |
| BsrDI | GCAATG | 1 cut(s) | 304 |
| BsrGI | TGTACA | 1 cut(s) | 1062 |
| BsrI | ACTGG | 4 cut(s) | 1167, 1472, 2090, 2090 |
| BssECI | CCNNGG | 7 cut(s) | 144, 282, 537, 856, 1221, 2172, 2306 |
| BssMI | GATC | 9 cut(s) | 286, 531, 1462, 1795, 1912, 2000, 2161, 2281, 2302 |
| BssSI | CACGAG | 1 cut(s) | 555 |
| BssT1I | CCWWGG | 2 cut(s) | 282, 1221 |
| Bst2BI | CACGAG | 1 cut(s) | 555 |
| Bst2UI | CCWGG | 2 cut(s) | 145, 1001 |
| BstAFI | CTTAAG | 1 cut(s) | 2104 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 1235 |
| BstAUI | TGTACA | 1 cut(s) | 1062 |
| BstC8I | GCNNGC | 5 cut(s) | 9, 808, 1389, 1588, 2121 |
| BstDSI | CCRYGG | 3 cut(s) | 1221, 2172, 2306 |
| BstF5I | GGATG | 2 cut(s) | 1504, 1558 |
| BstFNI | CGCG | 2 cut(s) | 319, 920 |
| BstKTI | GATC | 9 cut(s) | 289, 534, 1465, 1798, 1915, 2003, 2164, 2284, 2305 |
| BstMAI | GTCTC | 2 cut(s) | 1021, 1652 |
| BstMBI | GATC | 9 cut(s) | 286, 531, 1462, 1795, 1912, 2000, 2161, 2281, 2302 |
| BstMWI | GCNNNNNNNGC | 8 cut(s) | 557, 1091, 1181, 1226, 1235, 1238, 2120, 2343 |
| BstNI | CCWGG | 2 cut(s) | 145, 1001 |
| BstNSI | RCATGY | 3 cut(s) | 173, 1063, 1077 |
| BstSCI | CCNGG | 3 cut(s) | 143, 999, 1777 |
| BstSFI | CTRYAG | 2 cut(s) | 156, 1851 |
| BstSLI | GKGCMC | 2 cut(s) | 493, 1764 |
| BstUI | CGCG | 2 cut(s) | 319, 920 |
| BstV2I | GAAGAC | 1 cut(s) | 360 |
| BstX2I | RGATCY | 3 cut(s) | 286, 531, 2161 |
| BstYI | RGATCY | 3 cut(s) | 286, 531, 2161 |
| Bsu36I | CCTNAGG | 1 cut(s) | 1966 |
| BsuI | GTATCC | 1 cut(s) | 841 |
| BsuRI | GGCC | 9 cut(s) | 150, 1295, 1625, 1722, 1835, 2036, 2089, 2158, 2383 |
| BtgI | CCRYGG | 3 cut(s) | 1221, 2172, 2306 |
| BtsCI | GGATG | 2 cut(s) | 1504, 1558 |
| BtsIMutI | CAGTG | 5 cut(s) | 113, 504, 810, 1877, 2097 |
| Cac8I | GCNNGC | 5 cut(s) | 9, 808, 1389, 1588, 2121 |
| CaiI | CAGNNNCTG | 1 cut(s) | 1000 |
| CciI | TCATGA | 1 cut(s) | 1878 |
| Cfr13I | GGNCC | 7 cut(s) | 148, 908, 922, 1294, 1439, 2068, 2381 |
| CseI | GACGC | 1 cut(s) | 1481 |
| Csp6I | GTAC | 6 cut(s) | 315, 347, 1063, 1068, 1571, 2177 |
| CviQI | GTAC | 6 cut(s) | 315, 347, 1063, 1068, 1571, 2177 |
| DpnI | GATC | 9 cut(s) | 288, 533, 1464, 1797, 1914, 2002, 2163, 2283, 2304 |
| DpnII | GATC | 9 cut(s) | 286, 531, 1462, 1795, 1912, 2000, 2161, 2281, 2302 |
| DraI | TTTAAA | 2 cut(s) | 619, 657 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 2075 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 2075 |
| EaeI | YGGCCR | 3 cut(s) | 1623, 1833, 2087 |
| Ecl136II | GAGCTC | 1 cut(s) | 425 |
| Eco130I | CCWWGG | 2 cut(s) | 282, 1221 |
| Eco147I | AGGCCT | 1 cut(s) | 1722 |
| Eco24I | GRGCYC | 1 cut(s) | 427 |
| Eco32I | GATATC | 1 cut(s) | 343 |
| Eco47I | GGWCC | 4 cut(s) | 908, 922, 1439, 2068 |
| Eco53kI | GAGCTC | 1 cut(s) | 425 |
| Eco57I | CTGAAG | 2 cut(s) | 1064, 2232 |
| Eco81I | CCTNAGG | 1 cut(s) | 1966 |
| EcoICRI | GAGCTC | 1 cut(s) | 425 |
| EcoO109I | RGGNCCY | 2 cut(s) | 908, 1294 |
| EcoRII | CCWGG | 2 cut(s) | 143, 999 |
| EcoRV | GATATC | 1 cut(s) | 343 |
| EcoT14I | CCWWGG | 2 cut(s) | 282, 1221 |
| EcoT22I | ATGCAT | 1 cut(s) | 903 |
| EcoT38I | GRGCYC | 1 cut(s) | 427 |
| ErhI | CCWWGG | 2 cut(s) | 282, 1221 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 2335, 2367 |
| FaqI | GGGAC | 3 cut(s) | 40, 1829, 2063 |
| FbaI | TGATCA | 2 cut(s) | 1462, 2281 |
| FblI | GTMKAC | 2 cut(s) | 1959, 2028 |
| FokI | GGATG | 2 cut(s) | 1511, 1545 |
| FriOI | GRGCYC | 1 cut(s) | 427 |
| GsaI | CCCAGC | 2 cut(s) | 1850, 2075 |
| GsuI | CTGGAG | 1 cut(s) | 411 |
| HaeIII | GGCC | 9 cut(s) | 150, 1295, 1625, 1722, 1835, 2036, 2089, 2158, 2383 |
| HapII | CCGG | 2 cut(s) | 1496, 1779 |
| HgaI | GACGC | 1 cut(s) | 1481 |
| HincII | GTYRAC | 2 cut(s) | 586, 2029 |
| HindII | GTYRAC | 2 cut(s) | 586, 2029 |
| HindIII | AAGCTT | 1 cut(s) | 1633 |
| HinfI | GANTC | 7 cut(s) | 409, 450, 596, 759, 767, 1013, 1262 |
| HpaI | GTTAAC | 1 cut(s) | 586 |
| HpaII | CCGG | 2 cut(s) | 1496, 1779 |
| HphI | GGTGA | 2 cut(s) | 133, 2012 |
| Hpy166II | GTNNAC | 4 cut(s) | 586, 1762, 1960, 2029 |
| Hpy188III | TCNNGA | 9 cut(s) | 454, 1169, 1413, 1460, 1496, 1879, 1916, 2279, 2322 |
| Hpy8I | GTNNAC | 4 cut(s) | 586, 1762, 1960, 2029 |
| Hpy99I | CGWCG | 1 cut(s) | 676 |
| HpyAV | CCTTC | 4 cut(s) | 310, 1096, 1421, 1506 |
| HpyCH4IV | ACGT | 1 cut(s) | 833 |
| HpyF10VI | GCNNNNNNNGC | 8 cut(s) | 557, 1091, 1181, 1226, 1235, 1238, 2120, 2343 |
| HpySE526I | ACGT | 1 cut(s) | 833 |
| Kpn2I | TCCGGA | 1 cut(s) | 1495 |
| Ksp22I | TGATCA | 2 cut(s) | 1462, 2281 |
| KspAI | GTTAAC | 1 cut(s) | 586 |
| Kzo9I | GATC | 9 cut(s) | 286, 531, 1462, 1795, 1912, 2000, 2161, 2281, 2302 |
| LmnI | GCTCC | 8 cut(s) | 38, 53, 102, 422, 430, 1111, 1138, 1583 |
| LweI | GCATC | 4 cut(s) | 910, 1225, 1489, 2052 |
| MaeII | ACGT | 1 cut(s) | 833 |
| MaeIII | GTNAC | 4 cut(s) | 376, 686, 829, 1766 |
| MalI | GATC | 9 cut(s) | 288, 533, 1464, 1797, 1914, 2002, 2163, 2283, 2304 |
| MboI | GATC | 9 cut(s) | 286, 531, 1462, 1795, 1912, 2000, 2161, 2281, 2302 |
| MfeI | CAATTG | 3 cut(s) | 402, 1120, 1985 |
| MflI | RGATCY | 3 cut(s) | 286, 531, 2161 |
| MhlI | GDGCHC | 3 cut(s) | 427, 493, 1764 |
| MlsI | TGGCCA | 3 cut(s) | 1625, 1835, 2089 |
| MluCI | AATT | 9 cut(s) | 331, 402, 1120, 1248, 1419, 1520, 1698, 1985, 2317 |
| MluI | ACGCGT | 1 cut(s) | 317 |
| MluNI | TGGCCA | 3 cut(s) | 1625, 1835, 2089 |
| MmeI | TCCRAC | 2 cut(s) | 1239, 1807 |
| Mox20I | TGGCCA | 3 cut(s) | 1625, 1835, 2089 |
| Mph1103I | ATGCAT | 1 cut(s) | 903 |
| MroI | TCCGGA | 1 cut(s) | 1495 |
| MroXI | GAANNNNTTC | 1 cut(s) | 550 |
| MscI | TGGCCA | 3 cut(s) | 1625, 1835, 2089 |
| MseI | TTAA | 8 cut(s) | 585, 602, 618, 656, 719, 1449, 2105, 2234 |
| MslI | CAYNNNNRTG | 4 cut(s) | 118, 982, 1803, 2271 |
| Msp20I | TGGCCA | 3 cut(s) | 1625, 1835, 2089 |
| MspA1I | CMGCKG | 4 cut(s) | 1232, 1850, 1892, 2075 |
| MspCI | CTTAAG | 1 cut(s) | 2104 |
| MspI | CCGG | 2 cut(s) | 1496, 1779 |
| MspR9I | CCNGG | 3 cut(s) | 145, 1001, 1779 |
| MunI | CAATTG | 3 cut(s) | 402, 1120, 1985 |
| Mva1269I | GAATGC | 2 cut(s) | 1551, 1941 |
| MvaI | CCWGG | 2 cut(s) | 145, 1001 |
| MvnI | CGCG | 2 cut(s) | 319, 920 |
| MwoI | GCNNNNNNNGC | 8 cut(s) | 557, 1091, 1181, 1226, 1235, 1238, 2120, 2343 |
| NciI | CCSGG | 1 cut(s) | 1779 |
| NcoI | CCATGG | 1 cut(s) | 1221 |
| NdeII | GATC | 9 cut(s) | 286, 531, 1462, 1795, 1912, 2000, 2161, 2281, 2302 |
| NheI | GCTAGC | 1 cut(s) | 2119 |
| NlaIV | GGNNCC | 8 cut(s) | 104, 149, 492, 1585, 1694, 2070, 2170, 2326 |
| NmuCI | GTSAC | 2 cut(s) | 829, 1766 |
| NsiI | ATGCAT | 1 cut(s) | 903 |
| NspI | RCATGY | 3 cut(s) | 173, 1063, 1077 |
| PagI | TCATGA | 1 cut(s) | 1878 |
| PceI | AGGCCT | 1 cut(s) | 1722 |
| PciI | ACATGT | 2 cut(s) | 169, 1059 |
| PctI | GAATGC | 2 cut(s) | 1551, 1941 |
| PdmI | GAANNNNTTC | 1 cut(s) | 550 |
| PfeI | GAWTC | 7 cut(s) | 409, 450, 596, 759, 767, 1013, 1262 |
| PflFI | GACNNNGTC | 1 cut(s) | 1164 |
| PflMI | CCANNNNNTGG | 2 cut(s) | 1598, 2165 |
| PpuMI | RGGWCCY | 1 cut(s) | 908 |
| PscI | ACATGT | 2 cut(s) | 169, 1059 |
| Psp124BI | GAGCTC | 1 cut(s) | 427 |
| Psp5II | RGGWCCY | 1 cut(s) | 908 |
| Psp6I | CCWGG | 2 cut(s) | 143, 999 |
| PspFI | CCCAGC | 2 cut(s) | 1846, 2071 |
| PspGI | CCWGG | 2 cut(s) | 143, 999 |
| PspN4I | GGNNCC | 8 cut(s) | 104, 149, 492, 1585, 1694, 2070, 2170, 2326 |
| PspPI | GGNCC | 7 cut(s) | 148, 908, 922, 1294, 1439, 2068, 2381 |
| PspPPI | RGGWCCY | 1 cut(s) | 908 |
| PstNI | CAGNNNCTG | 1 cut(s) | 1000 |
| PsuI | RGATCY | 3 cut(s) | 286, 531, 2161 |
| PsyI | GACNNNGTC | 1 cut(s) | 1164 |
| PvuII | CAGCTG | 4 cut(s) | 1232, 1850, 1892, 2075 |
| RsaI | GTAC | 6 cut(s) | 316, 348, 1064, 1069, 1572, 2178 |
| RsaNI | GTAC | 6 cut(s) | 315, 347, 1063, 1068, 1571, 2177 |
| RseI | CAYNNNNRTG | 4 cut(s) | 118, 982, 1803, 2271 |
| SacI | GAGCTC | 1 cut(s) | 427 |
| SalI | GTCGAC | 1 cut(s) | 2027 |
| SaqAI | TTAA | 8 cut(s) | 585, 602, 618, 656, 719, 1449, 2105, 2234 |
| Sau3AI | GATC | 9 cut(s) | 286, 531, 1462, 1795, 1912, 2000, 2161, 2281, 2302 |
| Sau96I | GGNCC | 7 cut(s) | 148, 908, 922, 1294, 1439, 2068, 2381 |
| ScrFI | CCNGG | 3 cut(s) | 145, 1001, 1779 |
| SduI | GDGCHC | 3 cut(s) | 427, 493, 1764 |
| SfaNI | GCATC | 4 cut(s) | 910, 1225, 1489, 2052 |
| SfcI | CTRYAG | 2 cut(s) | 156, 1851 |
| SinI | GGWCC | 4 cut(s) | 908, 922, 1439, 2068 |
| SmiMI | CAYNNNNRTG | 4 cut(s) | 118, 982, 1803, 2271 |
| SmlI | CTYRAG | 4 cut(s) | 269, 1506, 1772, 2104 |
| SmoI | CTYRAG | 4 cut(s) | 269, 1506, 1772, 2104 |
| SpeI | ACTAGT | 1 cut(s) | 580 |
| Sse9I | AATT | 9 cut(s) | 331, 402, 1120, 1248, 1419, 1520, 1698, 1985, 2317 |
| SseBI | AGGCCT | 1 cut(s) | 1722 |
| SsiI | CCGC | 1 cut(s) | 920 |
| SstI | GAGCTC | 1 cut(s) | 427 |
| StuI | AGGCCT | 1 cut(s) | 1722 |
| StyD4I | CCNGG | 3 cut(s) | 143, 999, 1777 |
| StyI | CCWWGG | 2 cut(s) | 282, 1221 |
| TaiI | ACGT | 1 cut(s) | 836 |
| TaqI | TCGA | 4 cut(s) | 1011, 1414, 1555, 2028 |
| TasI | AATT | 9 cut(s) | 331, 402, 1120, 1248, 1419, 1520, 1698, 1985, 2317 |
| TatI | WGTACW | 2 cut(s) | 1062, 1067 |
| TfiI | GAWTC | 7 cut(s) | 409, 450, 596, 759, 767, 1013, 1262 |
| Tru1I | TTAA | 8 cut(s) | 585, 602, 618, 656, 719, 1449, 2105, 2234 |
| Tru9I | TTAA | 8 cut(s) | 585, 602, 618, 656, 719, 1449, 2105, 2234 |
| TscAI | CASTG | 5 cut(s) | 120, 511, 817, 1877, 2097 |
| TseFI | GTSAC | 2 cut(s) | 829, 1766 |
| Tsp45I | GTSAC | 2 cut(s) | 829, 1766 |
| TspGWI | ACGGA | 2 cut(s) | 374, 1409 |
| TspRI | CASTG | 5 cut(s) | 120, 511, 817, 1877, 2097 |
| Tth111I | GACNNNGTC | 1 cut(s) | 1164 |
| Van91I | CCANNNNNTGG | 2 cut(s) | 1598, 2165 |
| Vha464I | CTTAAG | 1 cut(s) | 2104 |
| VneI | GTGCAC | 1 cut(s) | 1760 |
| VpaK11BI | GGWCC | 4 cut(s) | 908, 922, 1439, 2068 |
| XceI | RCATGY | 3 cut(s) | 173, 1063, 1077 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 1677 |
| XmiI | GTMKAC | 2 cut(s) | 1959, 2028 |
| XmnI | GAANNNNTTC | 1 cut(s) | 550 |
| Zsp2I | ATGCAT | 1 cut(s) | 903 |