Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0007573

Physical Location & Seq

Genomic Coordinates Forward (+)

52127698 .. 52128147

Gene Structure 450 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0408700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 450 bp

ATGATGGTGGTACTTAATTTTAACCTCCTCAGGTTCATGCGCTTCTTCTTATTGAGTTTGAAAGAGTCAATAGGTATGGCTTTTGTCCAATCTTCTTCAGCTTCAACTTATCCTATTTTTAACATCTTAATGCTTTCATCTTTGAGAGCAAGTGCTTCCTGTTTCATAAAAGTGACCTGGACACCTCCCCTTCCCCCTTGGGTGAAGATAAACACAGACGGTTCTTTCTGGGACGAGGACAATGCGAGCTATGGTGGTATAGCGCGCGATGCTAAGGGTGCTTTTGTTCATGCTTTCATTCCTACCGCCCTTGATGCTGAGGTTCATACTTTTCTAGAAGCATTACGGGTGGCCAGGTCACGTAATTGGCACCATTTGTGGATTGGACTCATCCGTAATGGTGAGATATTTCATGTCCCCGACTCTTGTCCCTTGGAAGCTGCGCATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase Pkinase_Tyr Usp

Protein Analysis

149

Amino Acids

16.78

Weight (kDa)

7.01

Isoelectric Point (pI)

38.91

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007573)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G16760 AT1G16760 AT1G78940 AT1G78940 AT1G78940 AT3G20200 AT3G20200 AT3G20200 AT3G20200
fragaria_vesca	FvH4_6g36560
malus_domestica	MD09G1167400.v1.1 MD17G1161000.v1.1
prunus_persica	Prupe.3G025400_v2.0.a1 Prupe.3G025400_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0149031
rosa_laevigata	RLG00000020364
rosa_multiflora	Rmu_sc0007360.1_g000003
rosa_roxburghii	Rroxscaffold_2G00098520
rosa_rugosa	Rorug02G0408600 Rorug02G0408700
rosa_samantha	Rh2BG480900 Rh2CG454400 Rh2DG489700
rosa_wichuraiana	Rw2G038130

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	444
AccB1I	GGYRCC	1 cut(s)	369
AccII	CGCG	2 cut(s)	265, 267
AciI	CCGC	1 cut(s)	306
AcoI	YGGCCR	1 cut(s)	351
AcuI	CTGAAG	1 cut(s)	81
AfaI	GTAC	1 cut(s)	12
AgsI	TTSAA	2 cut(s)	61, 105
AjnI	CCWGG	2 cut(s)	176, 353
AluBI	AGCT	3 cut(s)	101, 249, 440
AluI	AGCT	3 cut(s)	101, 249, 440
AoxI	GGCC	1 cut(s)	351
ApeKI	GCWGC	1 cut(s)	440
AspLEI	GCGC	4 cut(s)	42, 265, 267, 445
AsuHPI	GGTGA	2 cut(s)	214, 413
AxyI	CCTNAGG	1 cut(s)	29
BalI	TGGCCA	1 cut(s)	353
BanI	GGYRCC	1 cut(s)	369
BbvCI	CCTCAGC	1 cut(s)	318
BbvI	GCAGC	1 cut(s)	427
BcgI	CGANNNNNNTGC	2 cut(s)	224, 258
BciT130I	CCWGG	2 cut(s)	178, 355
BfaI	CTAG	1 cut(s)	335
BisI	GCNGC	1 cut(s)	441
BlsI	GCNGC	1 cut(s)	442
Bme1390I	CCNGG	2 cut(s)	178, 355
BmiI	GGNNCC	1 cut(s)	371
BmrFI	CCNGG	2 cut(s)	178, 355
BmsI	GCATC	2 cut(s)	259, 304
BoxI	GACNNNNGTC	1 cut(s)	426
Bpu10I	CCTNAGC	2 cut(s)	273, 318
BsaAI	YACGTR	1 cut(s)	362
BsaJI	CCNNGG	2 cut(s)	197, 432
Bse21I	CCTNAGG	1 cut(s)	29
BseBI	CCWGG	2 cut(s)	178, 355
BseDI	CCNNGG	2 cut(s)	197, 432
BseGI	GGATG	1 cut(s)	390
BseMII	CTCAG	2 cut(s)	43, 309
BsePI	GCGCGC	1 cut(s)	263
BseRI	GAGGAG	1 cut(s)	17
BseXI	GCAGC	1 cut(s)	427
Bsh1236I	CGCG	2 cut(s)	265, 267
BshFI	GGCC	1 cut(s)	353
BshNI	GGYRCC	1 cut(s)	369
BslFI	GGGAC	3 cut(s)	245, 401, 414
BsmFI	GGGAC	3 cut(s)	245, 401, 414
BsnI	GGCC	1 cut(s)	353
BspACI	CCGC	1 cut(s)	306
BspANI	GGCC	1 cut(s)	353
BspCNI	CTCAG	2 cut(s)	42, 310
BspFNI	CGCG	2 cut(s)	265, 267
BspLI	GGNNCC	1 cut(s)	371
BspT107I	GGYRCC	1 cut(s)	369
BssECI	CCNNGG	2 cut(s)	197, 432
BssHII	GCGCGC	1 cut(s)	263
BssT1I	CCWWGG	2 cut(s)	197, 432
Bst2UI	CCWGG	2 cut(s)	178, 355
Bst4CI	ACNGT	1 cut(s)	221
BstBAI	YACGTR	1 cut(s)	362
BstC8I	GCNNGC	2 cut(s)	247, 265
BstDEI	CTNAG	3 cut(s)	29, 273, 318
BstF5I	GGATG	1 cut(s)	390
BstFNI	CGCG	2 cut(s)	265, 267
BstHHI	GCGC	4 cut(s)	42, 265, 267, 445
BstMWI	GCNNNNNNNGC	3 cut(s)	269, 278, 314
BstNI	CCWGG	2 cut(s)	178, 355
BstPAI	GACNNNNGTC	1 cut(s)	426
BstSCI	CCNGG	2 cut(s)	176, 353
BstUI	CGCG	2 cut(s)	265, 267
BstV1I	GCAGC	1 cut(s)	427
Bsu36I	CCTNAGG	1 cut(s)	29
BsuRI	GGCC	1 cut(s)	353
BtgZI	GCGATG	1 cut(s)	282
BtsCI	GGATG	1 cut(s)	390
Cac8I	GCNNGC	2 cut(s)	247, 265
CfoI	GCGC	4 cut(s)	42, 265, 267, 445
Csp6I	GTAC	1 cut(s)	11
CviAII	CATG	3 cut(s)	37, 290, 413
CviJI	RGCY	5 cut(s)	80, 101, 249, 353, 440
CviKI_1	RGCY	5 cut(s)	80, 101, 249, 353, 440
CviQI	GTAC	1 cut(s)	11
DdeI	CTNAG	3 cut(s)	29, 273, 318
EaeI	YGGCCR	1 cut(s)	351
Eco130I	CCWWGG	2 cut(s)	197, 432
Eco57I	CTGAAG	1 cut(s)	81
Eco81I	CCTNAGG	1 cut(s)	29
EcoRII	CCWGG	2 cut(s)	176, 353
EcoT14I	CCWWGG	2 cut(s)	197, 432
ErhI	CCWWGG	2 cut(s)	197, 432
FaeI	CATG	3 cut(s)	40, 293, 416
FaiI	YATR	8 cut(s)	38, 77, 167, 252, 260, 291, 327, 414
FaqI	GGGAC	3 cut(s)	245, 401, 414
FatI	CATG	3 cut(s)	36, 289, 412
Fnu4HI	GCNGC	1 cut(s)	441
FokI	GGATG	1 cut(s)	377
Fsp4HI	GCNGC	1 cut(s)	441
FspBI	CTAG	1 cut(s)	335
FspI	TGCGCA	1 cut(s)	444
GlaI	GCGC	4 cut(s)	41, 264, 266, 444
GluI	GCNGC	1 cut(s)	441
HaeIII	GGCC	1 cut(s)	353
HhaI	GCGC	4 cut(s)	42, 265, 267, 445
Hin1II	CATG	3 cut(s)	40, 293, 416
Hin6I	GCGC	4 cut(s)	40, 263, 265, 443
HinP1I	GCGC	4 cut(s)	40, 263, 265, 443
HinfI	GANTC	3 cut(s)	65, 387, 422
HphI	GGTGA	2 cut(s)	214, 413
Hpy188III	TCNNGA	1 cut(s)	335
HpyAV	CCTTC	1 cut(s)	200
HpyCH4III	ACNGT	1 cut(s)	221
HpyCH4IV	ACGT	1 cut(s)	361
HpyF10VI	GCNNNNNNNGC	3 cut(s)	269, 278, 314
HpyF3I	CTNAG	3 cut(s)	29, 273, 318
HpySE526I	ACGT	1 cut(s)	361
Hsp92II	CATG	3 cut(s)	40, 293, 416
HspAI	GCGC	4 cut(s)	40, 263, 265, 443
LpnPI	CCDG	7 cut(s)	16, 163, 172, 190, 214, 340, 367
Lsp1109I	GCAGC	1 cut(s)	427
LweI	GCATC	2 cut(s)	259, 304
MaeI	CTAG	1 cut(s)	335
MaeII	ACGT	1 cut(s)	361
MaeIII	GTNAC	2 cut(s)	172, 357
MboII	GAAGA	4 cut(s)	37, 84, 87, 217
MlsI	TGGCCA	1 cut(s)	353
MluCI	AATT	2 cut(s)	16, 364
MluNI	TGGCCA	1 cut(s)	353
MlyI	GAGTC	3 cut(s)	74, 381, 416
MnlI	CCTC	5 cut(s)	35, 38, 195, 229, 313
Mox20I	TGGCCA	1 cut(s)	353
MscI	TGGCCA	1 cut(s)	353
MseI	TTAA	4 cut(s)	15, 21, 120, 128
MslI	CAYNNNNRTG	2 cut(s)	128, 170
Msp20I	TGGCCA	1 cut(s)	353
MspR9I	CCNGG	2 cut(s)	178, 355
MvaI	CCWGG	2 cut(s)	178, 355
MvnI	CGCG	2 cut(s)	265, 267
MwoI	GCNNNNNNNGC	3 cut(s)	269, 278, 314
NlaIII	CATG	3 cut(s)	40, 293, 416
NlaIV	GGNNCC	1 cut(s)	371
NmuCI	GTSAC	2 cut(s)	172, 357
NsbI	TGCGCA	1 cut(s)	444
PauI	GCGCGC	1 cut(s)	263
PkrI	GCNGC	1 cut(s)	442
PleI	GAGTC	3 cut(s)	73, 381, 416
PpsI	GAGTC	3 cut(s)	73, 381, 416
Ppu21I	YACGTR	1 cut(s)	362
PshAI	GACNNNNGTC	1 cut(s)	426
Psp6I	CCWGG	2 cut(s)	176, 353
PspGI	CCWGG	2 cut(s)	176, 353
PspN4I	GGNNCC	1 cut(s)	371
PteI	GCGCGC	1 cut(s)	263
RsaI	GTAC	1 cut(s)	12
RsaNI	GTAC	1 cut(s)	11
RseI	CAYNNNNRTG	2 cut(s)	128, 170
SaqAI	TTAA	4 cut(s)	15, 21, 120, 128
SatI	GCNGC	1 cut(s)	441
SchI	GAGTC	3 cut(s)	74, 381, 416
ScrFI	CCNGG	2 cut(s)	178, 355
SfaNI	GCATC	2 cut(s)	259, 304
SmiMI	CAYNNNNRTG	2 cut(s)	128, 170
Sse9I	AATT	2 cut(s)	16, 364
SsiI	CCGC	1 cut(s)	306
SspMI	CTAG	1 cut(s)	335
StyD4I	CCNGG	2 cut(s)	176, 353
StyI	CCWWGG	2 cut(s)	197, 432
TaaI	ACNGT	1 cut(s)	221
TaiI	ACGT	1 cut(s)	364
TasI	AATT	2 cut(s)	16, 364
Tru1I	TTAA	4 cut(s)	15, 21, 120, 128
Tru9I	TTAA	4 cut(s)	15, 21, 120, 128
TseFI	GTSAC	2 cut(s)	172, 357
TseI	GCWGC	1 cut(s)	440
Tsp45I	GTSAC	2 cut(s)	172, 357
TspDTI	ATGAA	7 cut(s)	25, 126, 154, 278, 286, 314, 401
TspGWI	ACGGA	1 cut(s)	383
XbaI	TCTAGA	1 cut(s)	334
XcmI	CCANNNNNNNNNTGG	1 cut(s)	380
XspI	CTAG	1 cut(s)	335

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.