Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0007360.1

Orthogroup ID

OG0007573

Physical Location & Seq

Genomic Coordinates Reverse (-)

15569 .. 17991

Gene Structure 2423 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0007360.1_g000003.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1377 bp

atgtggtataacaaaggaggtaatgcggtgaagacgaaagaaggaggtggaggaggaggaaatgggttggtagcggtcgccatagacaaggacaaagggagccaaaatgcattgaggtgggctgctgagtctattctctcccggggccaaactatacaatgccttgatgtcatacttgaagatacagatattggaaaagcattaacagagtatgtttcttatgctgcaattgagactctggttcttggagctccgtcaaagcatggttttataagattcaagtcatcaggtatgtcaagcagtgtcttaaaaggggcaccagatttctgcacggtatatgtcatctccaaagggaagccctcttcacagcgaaatgcttctcgtgctgccccatatagatctccactactttcccacattgagtccctaaataagcagaatgcttctaaagtatctgaaacacctaaacacaacatatacttgaaagcagccaagccatcgttcaagcctcgtaacttgccagatgacccattcagatcgccatttgctagaggaggaggaggttttactaaaggaaggatgagtggaggattctcagaatctgaaagtgacatatcatttataagctcagacagagcaagcacagaccgtgcttcatctgtaatgtatgagtatattgatcaaggccgaggagggcggttatctaccagctccgaccacagctttggttcaatccctatagctcctaagttcggggacctcaattctatgaatgatttttcgatggtgtctgacaccagcctaacatcatcttcatggtcatcacaaaacctggaggaagttgaagctgagatgaggaggctaaagctagagctgaagcaaacaatggacatgtacagcacagcatgtagagaagcacttacagctaaacagaaggaaatggagctgaacaatttgaaggctgaagaggaacaaaagctagaggaggcacgactggctcaagaagctgcaattgcagtcgctgagaaagaaaaagctaggtgcagggcagccatggaagcagctgatgctgctaagagaattgcagagttggaatcacaaaaacgagcacatacagaaatgaaagccctcagggaagcagaggaaatgagcaagatattgaataatctagccaactctgataccaaatacaggagatatagcattgatgagatagaagcagcaacagagcactttgctccaagccgaaaaattggggaaggaggttatggtcctgtctataagtgctatcttgatcacacaccagttgcagtcaaggtcttgcgtccagatgcagctcaaggaaggtcacagtttcagcaagaggtgagggtctga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase Pkinase_Tyr Usp

Protein Analysis

458

Amino Acids

50.12

Weight (kDa)

8.56

Isoelectric Point (pI)

52.2

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007573)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G16760 AT1G16760 AT1G78940 AT1G78940 AT1G78940 AT3G20200 AT3G20200 AT3G20200 AT3G20200
fragaria_vesca	FvH4_6g36560
malus_domestica	MD09G1167400.v1.1 MD17G1161000.v1.1
prunus_persica	Prupe.3G025400_v2.0.a1 Prupe.3G025400_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0149031
rosa_laevigata	RLG00000020364
rosa_multiflora	Rmu_sc0007360.1_g000003
rosa_roxburghii	Rroxscaffold_2G00098520
rosa_rugosa	Rorug02G0408600 Rorug02G0408700
rosa_samantha	Rh2BG480900 Rh2CG454400 Rh2DG489700
rosa_wichuraiana	Rw2G038130

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	272, 623
AccB1I	GGYRCC	1 cut(s)	316
AciI	CCGC	3 cut(s)	26, 74, 697
AcuI	CTGAAG	2 cut(s)	896, 984
AfaI	GTAC	1 cut(s)	896
AfiI	CCNNNNNNNGG	2 cut(s)	752, 1191
AflIII	ACRYGT	1 cut(s)	891
AgsI	TTSAA	8 cut(s)	179, 280, 484, 505, 732, 845, 958, 1162
AjnI	CCWGG	1 cut(s)	831
AjuI	GAANNNNNNNTTGG	2 cut(s)	485, 517
Alw21I	GWGCWC	3 cut(s)	253, 1111, 1233
Alw26I	GTCTC	1 cut(s)	227
AlwNI	CAGNNNCTG	2 cut(s)	602, 1022
Ama87I	CYCGRG	1 cut(s)	141
AoxI	GGCC	2 cut(s)	145, 685
ArsI	GACNNNNNNTTYG	2 cut(s)	707, 739
Asp700I	GAANNNNTTC	1 cut(s)	376
AspS9I	GGNCC	3 cut(s)	145, 757, 1271
AsuC2I	CCSGG	2 cut(s)	142, 143
AsuHPI	GGTGA	1 cut(s)	40
AvaI	CYCGRG	1 cut(s)	141
AvaII	GGWCC	2 cut(s)	757, 1271
AxyI	CCTNAGG	1 cut(s)	1130
BaeGI	GKGCMC	1 cut(s)	319
BanI	GGYRCC	1 cut(s)	316
BanII	GRGCYC	1 cut(s)	253
BauI	CACGAG	1 cut(s)	381
BbsI	GAAGAC	1 cut(s)	38
Bbv12I	GWGCWC	3 cut(s)	253, 1111, 1233
BccI	CCATC	2 cut(s)	505, 778
BciT130I	CCWGG	1 cut(s)	833
BclI	TGATCA	2 cut(s)	679, 1294
BcnI	CCSGG	2 cut(s)	142, 143
BcoDI	GTCTC	1 cut(s)	227
BfaI	CTAG	5 cut(s)	549, 869, 980, 1038, 1169
BfmI	CTRYAG	1 cut(s)	738
BglII	AGATCT	1 cut(s)	398
Bme1390I	CCNGG	3 cut(s)	142, 143, 833
Bme18I	GGWCC	2 cut(s)	757, 1271
BmeT110I	CYCGRG	1 cut(s)	141
BmgT120I	GGNCC	3 cut(s)	145, 757, 1271
BmiI	GGNNCC	4 cut(s)	101, 146, 318, 758
BmrFI	CCNGG	3 cut(s)	142, 143, 833
BmsI	GCATC	2 cut(s)	1057, 1321
BpiI	GAAGAC	1 cut(s)	38
BpmI	CTGGAG	1 cut(s)	854
BpuEI	CTTGAG	2 cut(s)	984, 1323
BpuMI	CCSGG	2 cut(s)	142, 143
BsaJI	CCNNGG	4 cut(s)	141, 142, 688, 1053
Bsc4I	CCNNNNNNNGG	2 cut(s)	752, 1191
Bse1I	ACTGG	2 cut(s)	999, 1304
Bse21I	CCTNAGG	1 cut(s)	1130
BseBI	CCWGG	1 cut(s)	833
BseDI	CCNNGG	4 cut(s)	141, 142, 688, 1053
BseGI	GGATG	1 cut(s)	585
BseLI	CCNNNNNNNGG	2 cut(s)	752, 1191
BseMII	CTCAG	6 cut(s)	117, 609, 642, 840, 1014, 1144
BseNI	ACTGG	2 cut(s)	999, 1304
BseRI	GAGGAG	8 cut(s)	66, 69, 567, 570, 573, 705, 871, 998
BseSI	GKGCMC	1 cut(s)	319
BsgI	GTGCAG	2 cut(s)	313, 1063
Bsh1285I	CGRYCG	1 cut(s)	78
BshFI	GGCC	2 cut(s)	147, 687
BshNI	GGYRCC	1 cut(s)	316
BsiEI	CGRYCG	1 cut(s)	78
BsiHKAI	GWGCWC	3 cut(s)	253, 1111, 1233
BsiHKCI	CYCGRG	1 cut(s)	141
BsiSI	CCGG	1 cut(s)	142
BslFI	GGGAC	2 cut(s)	409, 770
BslI	CCNNNNNNNGG	2 cut(s)	752, 1191
BsmAI	GTCTC	1 cut(s)	227
BsmFI	GGGAC	2 cut(s)	409, 770
BsmI	GAATGC	1 cut(s)	445
BsnI	GGCC	2 cut(s)	147, 687
BsoBI	CYCGRG	1 cut(s)	141
Bsp1286I	GDGCHC	4 cut(s)	253, 319, 1111, 1233
Bsp1407I	TGTACA	1 cut(s)	894
Bsp143I	GATC	4 cut(s)	398, 536, 679, 1294
Bsp19I	CCATGG	1 cut(s)	1053
BspACI	CCGC	3 cut(s)	26, 74, 697
BspANI	GGCC	2 cut(s)	147, 687
BspCNI	CTCAG	6 cut(s)	118, 608, 641, 841, 1015, 1143
BspLI	GGNNCC	4 cut(s)	101, 146, 318, 758
BspT107I	GGYRCC	1 cut(s)	316
BsrGI	TGTACA	1 cut(s)	894
BsrI	ACTGG	2 cut(s)	999, 1304
BssECI	CCNNGG	4 cut(s)	141, 142, 688, 1053
BssMI	GATC	4 cut(s)	398, 536, 679, 1294
BssSI	CACGAG	1 cut(s)	381
BssT1I	CCWWGG	1 cut(s)	1053
Bst2BI	CACGAG	1 cut(s)	381
Bst2UI	CCWGG	1 cut(s)	833
Bst4CI	ACNGT	3 cut(s)	334, 650, 1353
Bst6I	CTCTTC	2 cut(s)	367, 960
BstAPI	GCANNNNNTGC	1 cut(s)	1067
BstAUI	TGTACA	1 cut(s)	894
BstC8I	GCNNGC	1 cut(s)	640
BstDEI	CTNAG	8 cut(s)	126, 595, 628, 747, 849, 1023, 1074, 1130
BstDSI	CCRYGG	1 cut(s)	1053
BstF5I	GGATG	1 cut(s)	585
BstKTI	GATC	4 cut(s)	401, 539, 682, 1297
BstMAI	GTCTC	1 cut(s)	227
BstMBI	GATC	4 cut(s)	398, 536, 679, 1294
BstMCI	CGRYCG	1 cut(s)	78
BstMWI	GCNNNNNNNGC	8 cut(s)	383, 923, 995, 1004, 1013, 1058, 1067, 1070
BstNI	CCWGG	1 cut(s)	833
BstNSI	RCATGY	2 cut(s)	895, 909
BstSCI	CCNGG	3 cut(s)	140, 141, 831
BstSFI	CTRYAG	1 cut(s)	738
BstSLI	GKGCMC	1 cut(s)	319
BstV2I	GAAGAC	1 cut(s)	38
BstX2I	RGATCY	1 cut(s)	398
BstXI	CCANNNNNNTGG	1 cut(s)	725
BstYI	RGATCY	1 cut(s)	398
Bsu36I	CCTNAGG	1 cut(s)	1130
BsuRI	GGCC	2 cut(s)	147, 687
BtgI	CCRYGG	1 cut(s)	1053
BtsCI	GGATG	1 cut(s)	585
BtsI	GCAGTG	1 cut(s)	307
BtsIMutI	CAGTG	1 cut(s)	307
Cac8I	GCNNGC	1 cut(s)	640
CaiI	CAGNNNCTG	2 cut(s)	602, 1022
Cfr13I	GGNCC	3 cut(s)	145, 757, 1271
Cfr9I	CCCGGG	1 cut(s)	141
CseI	GACGC	1 cut(s)	1313
Csp6I	GTAC	1 cut(s)	895
CviAII	CATG	5 cut(s)	263, 816, 892, 906, 1054
CviQI	GTAC	1 cut(s)	895
DdeI	CTNAG	8 cut(s)	126, 595, 628, 747, 849, 1023, 1074, 1130
DpnI	GATC	4 cut(s)	400, 538, 681, 1296
DpnII	GATC	4 cut(s)	398, 536, 679, 1294
Eam1104I	CTCTTC	2 cut(s)	367, 960
EarI	CTCTTC	2 cut(s)	367, 960
Ecl136II	GAGCTC	1 cut(s)	251
Eco130I	CCWWGG	1 cut(s)	1053
Eco24I	GRGCYC	1 cut(s)	253
Eco47I	GGWCC	2 cut(s)	757, 1271
Eco53kI	GAGCTC	1 cut(s)	251
Eco57I	CTGAAG	2 cut(s)	896, 984
Eco81I	CCTNAGG	1 cut(s)	1130
Eco88I	CYCGRG	1 cut(s)	141
EcoICRI	GAGCTC	1 cut(s)	251
EcoO109I	RGGNCCY	1 cut(s)	757
EcoRII	CCWGG	1 cut(s)	831
EcoT14I	CCWWGG	1 cut(s)	1053
EcoT22I	ATGCAT	1 cut(s)	112
EcoT38I	GRGCYC	1 cut(s)	253
ErhI	CCWWGG	1 cut(s)	1053
FaeI	CATG	5 cut(s)	266, 819, 895, 909, 1057
FaqI	GGGAC	2 cut(s)	409, 770
FatI	CATG	5 cut(s)	262, 815, 891, 905, 1053
FbaI	TGATCA	2 cut(s)	679, 1294
FokI	GGATG	1 cut(s)	592
FriOI	GRGCYC	1 cut(s)	253
FspBI	CTAG	5 cut(s)	549, 869, 980, 1038, 1169
GsuI	CTGGAG	1 cut(s)	854
HaeIII	GGCC	2 cut(s)	147, 687
HapII	CCGG	1 cut(s)	142
HgaI	GACGC	1 cut(s)	1313
Hin1II	CATG	5 cut(s)	266, 819, 895, 909, 1057
HinfI	GANTC	7 cut(s)	128, 235, 276, 422, 591, 599, 1094
HpaII	CCGG	1 cut(s)	142
HphI	GGTGA	1 cut(s)	40
Hpy188I	TCNGA	9 cut(s)	457, 536, 598, 604, 631, 715, 793, 1180, 1376
Hpy188III	TCNNGA	3 cut(s)	1001, 1292, 1328
HpyAV	CCTTC	6 cut(s)	35, 570, 928, 952, 1253, 1338
HpyCH4III	ACNGT	3 cut(s)	334, 650, 1353
HpyCH4V	TGCA	9 cut(s)	110, 227, 330, 1010, 1016, 1044, 1085, 1310, 1334
HpyF10VI	GCNNNNNNNGC	8 cut(s)	383, 923, 995, 1004, 1013, 1058, 1067, 1070
HpyF3I	CTNAG	8 cut(s)	126, 595, 628, 747, 849, 1023, 1074, 1130
Hsp92II	CATG	5 cut(s)	266, 819, 895, 909, 1057
Ksp22I	TGATCA	2 cut(s)	679, 1294
Kzo9I	GATC	4 cut(s)	398, 536, 679, 1294
LmnI	GCTCC	7 cut(s)	99, 248, 256, 716, 748, 943, 1243
LweI	GCATC	2 cut(s)	1057, 1321
MaeI	CTAG	5 cut(s)	549, 869, 980, 1038, 1169
MaeIII	GTNAC	3 cut(s)	512, 608, 1347
MalI	GATC	4 cut(s)	400, 538, 681, 1296
MboI	GATC	4 cut(s)	398, 536, 679, 1294
MboII	GAAGA	5 cut(s)	43, 191, 354, 804, 977
MfeI	CAATTG	2 cut(s)	228, 1011
MflI	RGATCY	1 cut(s)	398
MhlI	GDGCHC	4 cut(s)	253, 319, 1111, 1233
MluCI	AATT	6 cut(s)	228, 763, 952, 1011, 1080, 1251
MlyI	GAGTC	3 cut(s)	137, 229, 431
MmeI	TCCRAC	2 cut(s)	738, 1071
Mph1103I	ATGCAT	1 cut(s)	112
MroXI	GAANNNNTTC	1 cut(s)	376
MseI	TTAA	2 cut(s)	203, 308
MslI	CAYNNNNRTG	2 cut(s)	115, 814
MspA1I	CMGCKG	1 cut(s)	1064
MspI	CCGG	1 cut(s)	142
MspR9I	CCNGG	3 cut(s)	142, 143, 833
MunI	CAATTG	2 cut(s)	228, 1011
Mva1269I	GAATGC	1 cut(s)	445
MvaI	CCWGG	1 cut(s)	833
MwoI	GCNNNNNNNGC	8 cut(s)	383, 923, 995, 1004, 1013, 1058, 1067, 1070
NciI	CCSGG	2 cut(s)	142, 143
NcoI	CCATGG	1 cut(s)	1053
NdeII	GATC	4 cut(s)	398, 536, 679, 1294
NlaIII	CATG	5 cut(s)	266, 819, 895, 909, 1057
NlaIV	GGNNCC	4 cut(s)	101, 146, 318, 758
NmeAIII	GCCGAG	1 cut(s)	713
NmuCI	GTSAC	2 cut(s)	608, 1347
NsiI	ATGCAT	1 cut(s)	112
NspI	RCATGY	2 cut(s)	895, 909
PciI	ACATGT	1 cut(s)	891
PctI	GAATGC	1 cut(s)	445
PdmI	GAANNNNTTC	1 cut(s)	376
PfeI	GAWTC	4 cut(s)	276, 591, 599, 1094
PleI	GAGTC	3 cut(s)	136, 229, 430
PpsI	GAGTC	3 cut(s)	136, 229, 430
PpuMI	RGGWCCY	1 cut(s)	757
PscI	ACATGT	1 cut(s)	891
PsiI	TTATAA	2 cut(s)	272, 623
Psp124BI	GAGCTC	1 cut(s)	253
Psp5II	RGGWCCY	1 cut(s)	757
Psp6I	CCWGG	1 cut(s)	831
PspGI	CCWGG	1 cut(s)	831
PspN4I	GGNNCC	4 cut(s)	101, 146, 318, 758
PspPI	GGNCC	3 cut(s)	145, 757, 1271
PspPPI	RGGWCCY	1 cut(s)	757
PstNI	CAGNNNCTG	2 cut(s)	602, 1022
PsuI	RGATCY	1 cut(s)	398
PvuII	CAGCTG	1 cut(s)	1064
RsaI	GTAC	1 cut(s)	896
RsaNI	GTAC	1 cut(s)	895
RseI	CAYNNNNRTG	2 cut(s)	115, 814
SacI	GAGCTC	1 cut(s)	253
SaqAI	TTAA	2 cut(s)	203, 308
Sau3AI	GATC	4 cut(s)	398, 536, 679, 1294
Sau96I	GGNCC	3 cut(s)	145, 757, 1271
SchI	GAGTC	3 cut(s)	137, 229, 431
ScrFI	CCNGG	3 cut(s)	142, 143, 833
SduI	GDGCHC	4 cut(s)	253, 319, 1111, 1233
SfaNI	GCATC	2 cut(s)	1057, 1321
SfcI	CTRYAG	1 cut(s)	738
SinI	GGWCC	2 cut(s)	757, 1271
SmaI	CCCGGG	1 cut(s)	143
SmiMI	CAYNNNNRTG	2 cut(s)	115, 814
SmlI	CTYRAG	2 cut(s)	999, 1338
SmoI	CTYRAG	2 cut(s)	999, 1338
Sse9I	AATT	6 cut(s)	228, 763, 952, 1011, 1080, 1251
SsiI	CCGC	3 cut(s)	26, 74, 697
SspMI	CTAG	5 cut(s)	549, 869, 980, 1038, 1169
SstI	GAGCTC	1 cut(s)	253
StyD4I	CCNGG	3 cut(s)	140, 141, 831
StyI	CCWWGG	1 cut(s)	1053
TaaI	ACNGT	3 cut(s)	334, 650, 1353
TaqI	TCGA	1 cut(s)	782
TasI	AATT	6 cut(s)	228, 763, 952, 1011, 1080, 1251
TatI	WGTACW	1 cut(s)	894
TfiI	GAWTC	4 cut(s)	276, 591, 599, 1094
Tru1I	TTAA	2 cut(s)	203, 308
Tru9I	TTAA	2 cut(s)	203, 308
TscAI	CASTG	1 cut(s)	307
TseFI	GTSAC	2 cut(s)	608, 1347
Tsp45I	GTSAC	2 cut(s)	608, 1347
TspDTI	ATGAA	4 cut(s)	645, 785, 804, 1136
TspGWI	ACGGA	1 cut(s)	243
TspMI	CCCGGG	1 cut(s)	141
TspRI	CASTG	1 cut(s)	307
VpaK11BI	GGWCC	2 cut(s)	757, 1271
XceI	RCATGY	2 cut(s)	895, 909
XmaI	CCCGGG	1 cut(s)	141
XmnI	GAANNNNTTC	1 cut(s)	376
XspI	CTAG	5 cut(s)	549, 869, 980, 1038, 1169
Zsp2I	ATGCAT	1 cut(s)	112

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.